Wall clock time and date at job start Tue Mar 31 2020 12:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47150 * 2 1 4 4 C 1.50699 * 109.47217 * 239.99724 * 2 1 3 5 5 H 1.08004 * 120.00095 * 239.99947 * 4 2 1 6 6 C 1.37875 * 119.99834 * 60.00298 * 4 2 1 7 7 N 1.31511 * 119.99940 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99988 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47033 * 89.99601 * 8 6 4 10 10 H 1.48501 * 109.47038 * 210.00029 * 8 6 4 11 11 H 1.48503 * 109.46962 * 329.99916 * 8 6 4 12 12 N 1.46502 * 109.47282 * 119.99602 * 2 1 3 13 13 C 1.46505 * 119.99609 * 59.99708 * 12 2 1 14 14 C 1.34773 * 120.00376 * 240.00589 * 12 2 1 15 15 O 1.21285 * 119.99752 * 359.97438 * 14 12 2 16 16 C 1.50703 * 120.00225 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.47120 * 179.97438 * 16 14 12 18 18 H 1.09003 * 109.43778 * 304.91921 * 17 16 14 19 19 O 1.42938 * 109.40230 * 64.81390 * 17 16 14 20 20 C 1.36013 * 116.95997 * 74.59249 * 19 17 16 21 21 C 1.38439 * 120.44977 * 211.73263 * 20 19 17 22 22 C 1.38304 * 119.89095 * 181.47037 * 21 20 19 23 23 C 1.38280 * 120.23835 * 0.04109 * 22 21 20 24 24 C 1.38268 * 120.19180 * 359.95449 * 23 22 21 25 25 C 1.38567 * 119.84035 * 359.44697 * 24 23 22 26 26 N 1.40160 * 120.56073 * 181.75429 * 25 24 23 27 27 C 1.34945 * 119.23723 * 168.95316 * 26 25 24 28 28 O 1.21289 * 120.11221 * 174.06693 * 27 26 25 29 29 H 1.08999 * 109.47060 * 59.99860 * 1 2 3 30 30 H 1.08997 * 109.47064 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47245 * 300.00537 * 1 2 3 32 32 H 0.97002 * 119.99996 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47124 * 270.00189 * 13 12 2 34 34 H 1.08995 * 109.47199 * 30.00581 * 13 12 2 35 35 H 1.09005 * 109.46563 * 150.00367 * 13 12 2 36 36 H 1.09000 * 109.47237 * 59.99639 * 16 14 12 37 37 H 1.08992 * 109.47087 * 299.99588 * 16 14 12 38 38 H 1.08003 * 120.05608 * 1.49611 * 21 20 19 39 39 H 1.08006 * 119.87976 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.89945 * 179.67366 * 23 22 21 41 41 H 1.08002 * 120.07346 * 179.69191 * 24 23 22 42 42 H 0.96998 * 120.37935 * 348.97661 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6033 8 14 2.3214 -1.1205 -4.0079 9 1 1.3428 -2.1618 -4.4117 10 1 2.4867 -0.1415 -5.1122 11 1 3.6293 -1.7585 -3.7121 12 7 2.0184 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.0864 1.1255 1.8912 16 6 3.2950 -0.7457 3.3142 17 6 4.1455 0.2158 4.1466 18 1 4.9430 0.6247 3.5262 19 8 3.3236 1.2815 4.6282 20 6 2.4737 0.9915 5.6497 21 6 1.2581 1.6451 5.7581 22 6 0.4160 1.3632 6.8183 23 6 0.7842 0.4312 7.7712 24 6 1.9966 -0.2257 7.6694 25 6 2.8391 0.0434 6.6028 26 7 4.0550 -0.6401 6.4650 27 6 4.7475 -0.5274 5.3122 28 8 5.8502 -1.0227 5.2139 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.7082 1.1608 -3.4844 33 1 0.7375 -2.1442 1.9994 34 1 1.5295 -2.5968 0.4710 35 1 2.4629 -2.5818 1.9865 36 1 3.9004 -1.6024 3.0180 37 1 2.4471 -1.0878 3.9074 38 1 0.9677 2.3738 5.0156 39 1 -0.5324 1.8729 6.9025 40 1 0.1247 0.2191 8.5998 41 1 2.2844 -0.9496 8.4175 42 1 4.3946 -1.1881 7.1897 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264023159.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:16 Heat of formation + Delta-G solvation = -92.485388 kcal Electronic energy + Delta-G solvation = -27158.861160 eV Core-core repulsion = 23296.671967 eV Total energy + Delta-G solvation = -3862.189193 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.76868 -40.68184 -39.99010 -38.55608 -37.11055 -36.23133 -34.86677 -33.35806 -31.49098 -31.13875 -29.99403 -27.63179 -27.31689 -26.76920 -24.63710 -23.80759 -22.97553 -20.58033 -20.32542 -19.72973 -19.02572 -18.54093 -17.92917 -17.69204 -17.07946 -16.96314 -16.78535 -16.25048 -16.01862 -15.84213 -15.57378 -15.22449 -14.85912 -14.64310 -14.31476 -14.20293 -13.98904 -13.69009 -13.53618 -13.16901 -13.12700 -12.97614 -12.82881 -12.69018 -12.62841 -12.26568 -12.20455 -12.17235 -12.12704 -11.89799 -11.28871 -11.17182 -10.69363 -10.48117 -9.66229 -9.33893 -8.97837 -8.14362 -6.30812 0.02280 0.29957 1.08712 1.41189 1.43293 1.52752 1.58830 1.75102 2.21337 2.27824 2.45969 2.76071 2.85311 3.13770 3.32609 3.58156 3.69261 3.87396 4.10049 4.15213 4.32449 4.37499 4.38817 4.48145 4.57751 4.72088 4.77139 4.82542 4.90607 5.01515 5.05499 5.07510 5.23477 5.47135 5.48299 5.54521 5.58674 5.67269 5.69241 5.75331 6.03833 6.16822 6.30048 6.62689 6.76989 6.79086 7.30420 7.46345 8.90027 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.003569 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.235356 B = 7844.364055 C = 8595.839211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.262 3.738 3 H 0.009 0.991 4 C -0.539 4.539 5 H 0.061 0.939 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.267 1.267 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.599 5.599 13 C 0.077 3.923 14 C 0.502 3.498 15 O -0.585 6.585 16 C -0.147 4.147 17 C 0.098 3.902 18 H 0.137 0.863 19 O -0.306 6.306 20 C 0.048 3.952 21 C -0.127 4.127 22 C -0.104 4.104 23 C -0.105 4.105 24 C -0.112 4.112 25 C 0.076 3.924 26 N -0.641 5.641 27 C 0.508 3.492 28 O -0.535 6.535 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.019 0.981 32 H 0.264 0.736 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.132 0.868 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.156 0.844 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.376 -6.724 23.451 24.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.160 3.840 3 H 0.027 0.973 4 C -0.578 4.578 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.192 1.192 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.330 5.330 13 C -0.065 4.065 14 C 0.290 3.710 15 O -0.466 6.466 16 C -0.187 4.187 17 C 0.038 3.962 18 H 0.155 0.845 19 O -0.220 6.220 20 C 0.002 3.998 21 C -0.146 4.146 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.132 4.132 25 C -0.019 4.019 26 N -0.288 5.288 27 C 0.294 3.706 28 O -0.412 6.412 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.150 0.850 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.174 0.826 40 H 0.186 0.814 41 H 0.184 0.816 42 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -1.698 -6.042 22.888 23.733 hybrid contribution 0.604 -0.238 -1.120 1.294 sum -1.095 -6.281 21.769 22.683 Atomic orbital electron populations 1.21848 0.97063 1.00052 0.99882 1.18536 0.91657 0.92234 0.81524 0.97260 1.21585 1.31943 1.13107 0.91153 0.92038 1.25720 0.95079 0.95608 1.01980 1.70022 1.37284 1.23845 1.24408 0.85467 0.78842 0.78265 0.78505 1.19194 1.21230 1.19618 1.48199 1.49080 1.13363 1.22375 1.21877 1.01183 0.80584 1.02845 1.20656 0.78870 0.86750 0.84718 1.90673 1.59500 1.18915 1.77537 1.22150 1.02181 0.99554 0.94846 1.22506 0.93722 0.87681 0.92308 0.84528 1.86460 1.50995 1.35012 1.49581 1.19069 0.92499 0.99220 0.89033 1.20790 0.90858 1.02018 1.00981 1.21367 0.99867 0.98193 0.92827 1.21416 0.95959 0.95224 0.99717 1.21040 0.93636 1.01868 0.96696 1.18185 0.88351 0.97194 0.98187 1.43453 1.20483 1.47987 1.16904 1.21067 0.85044 0.79566 0.84923 1.90791 1.19404 1.48303 1.82671 0.91449 0.93487 0.96178 0.92650 0.91542 0.90986 0.89455 0.84969 0.86393 0.85918 0.82605 0.81425 0.81618 0.72930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 8.97 71.98 0.65 -5.62 16 2 C 0.26 13.72 2.64 44.24 0.12 13.84 16 3 H 0.01 0.59 6.90 -2.38 -0.02 0.57 16 4 C -0.54 -29.37 7.99 25.60 0.20 -29.17 16 5 H 0.06 3.24 7.33 -2.91 -0.02 3.22 16 6 C 0.02 0.87 5.30 84.65 0.45 1.32 16 7 N -0.92 -53.04 11.32 21.45 0.24 -52.80 16 8 Si 0.96 43.19 29.54 68.60 2.03 45.21 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 10 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 N -0.60 -25.26 2.75 -826.77 -2.28 -27.53 16 13 C 0.08 2.38 9.24 127.77 1.18 3.56 16 14 C 0.50 20.77 7.55 87.66 0.66 21.43 16 15 O -0.59 -29.88 14.74 10.97 0.16 -29.72 16 16 C -0.15 -4.29 3.77 29.85 0.11 -4.18 16 17 C 0.10 3.01 2.75 29.87 0.08 3.09 16 18 H 0.14 4.61 7.96 -2.39 -0.02 4.59 16 19 O -0.31 -10.20 9.37 -79.68 -0.75 -10.94 16 20 C 0.05 1.26 5.83 22.58 0.13 1.39 16 21 C -0.13 -2.98 10.00 22.33 0.22 -2.76 16 22 C -0.10 -1.57 10.04 22.30 0.22 -1.35 16 23 C -0.10 -1.13 10.04 22.29 0.22 -0.91 16 24 C -0.11 -1.36 9.94 22.36 0.22 -1.14 16 25 C 0.08 1.48 6.58 38.15 0.25 1.73 16 26 N -0.64 -12.39 5.46 -302.93 -1.65 -14.05 16 27 C 0.51 13.48 7.19 87.65 0.63 14.11 16 28 O -0.54 -16.87 17.95 -3.06 -0.05 -16.93 16 29 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 30 H 0.05 2.04 7.67 -2.39 -0.02 2.03 16 31 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 2.40 7.02 -2.39 -0.02 2.38 16 35 H 0.09 2.05 6.44 -2.38 -0.02 2.03 16 36 H 0.13 3.25 7.40 -2.39 -0.02 3.23 16 37 H 0.12 2.90 7.69 -2.39 -0.02 2.88 16 38 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 41 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 42 H 0.43 5.68 8.86 -92.71 -0.82 4.86 16 Total: -1.00 -76.81 350.42 3.29 -73.51 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.24 Total: 17.90 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 5.36 Total: 15.35 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -3.69 Total: -94.38 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -0.64 Total: -57.59 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -76.81 3.29 -73.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264023159.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.974 kcal (2) G-P(sol) polarization free energy of solvation -76.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds