Wall clock time and date at job start Tue Mar 31 2020 12:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47034 * 2 1 4 4 C 1.50701 * 109.47438 * 240.00260 * 2 1 3 5 5 H 1.07994 * 119.99964 * 240.00059 * 4 2 1 6 6 C 1.37883 * 120.00057 * 59.99833 * 4 2 1 7 7 N 1.31519 * 119.99788 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00122 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47558 * 89.99867 * 8 6 4 10 10 H 1.48502 * 109.47067 * 210.00278 * 8 6 4 11 11 H 1.48503 * 109.47068 * 329.99523 * 8 6 4 12 12 N 1.46496 * 109.47337 * 120.00157 * 2 1 3 13 13 C 1.46498 * 119.99922 * 59.99659 * 12 2 1 14 14 C 1.34780 * 120.00012 * 240.00181 * 12 2 1 15 15 O 1.21282 * 119.99810 * 359.97438 * 14 12 2 16 16 C 1.50701 * 119.99775 * 179.97438 * 14 12 2 17 17 N 1.46502 * 109.46838 * 179.97438 * 16 14 12 18 18 C 1.40216 * 120.50436 * 90.00446 * 17 16 14 19 19 C 1.38498 * 120.73561 * 15.46093 * 18 17 16 20 20 C 1.38294 * 119.81153 * 180.02562 * 19 18 17 21 21 C 1.38276 * 120.19711 * 359.72352 * 20 19 18 22 22 C 1.38312 * 120.26338 * 0.53657 * 21 20 19 23 23 C 1.38393 * 119.87128 * 359.44994 * 22 21 20 24 24 O 1.35990 * 120.67538 * 180.37770 * 23 22 21 25 25 C 1.42997 * 116.71285 * 147.15330 * 24 23 22 26 26 C 1.35085 * 120.51141 * 269.98142 * 17 16 14 27 27 O 1.21294 * 120.13524 * 1.67228 * 26 17 16 28 28 H 1.09001 * 109.47124 * 59.99852 * 1 2 3 29 29 H 1.08997 * 109.47335 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47311 * 299.99828 * 1 2 3 31 31 H 0.96998 * 119.99801 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47332 * 270.00390 * 13 12 2 33 33 H 1.08997 * 109.47010 * 30.00884 * 13 12 2 34 34 H 1.09005 * 109.47134 * 150.00076 * 13 12 2 35 35 H 1.09001 * 109.46898 * 60.00670 * 16 14 12 36 36 H 1.08994 * 109.47387 * 300.00018 * 16 14 12 37 37 H 1.07991 * 120.09727 * 0.07867 * 19 18 17 38 38 H 1.07997 * 119.90092 * 180.02562 * 20 19 18 39 39 H 1.08008 * 119.87003 * 180.24533 * 21 20 19 40 40 H 1.08002 * 120.06867 * 179.73629 * 22 21 20 41 41 H 1.08997 * 109.44602 * 286.34440 * 25 24 23 42 42 H 1.09002 * 109.41307 * 166.43436 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3215 -1.1201 -4.0080 9 1 1.3430 -2.1615 -4.4120 10 1 2.4867 -0.1411 -5.1123 11 1 3.6295 -1.7580 -3.7123 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0356 2.0833 15 8 3.0865 1.1254 1.8911 16 6 3.2951 -0.7459 3.3140 17 7 4.1095 0.1747 4.1111 18 6 3.5191 0.9715 5.1023 19 6 2.2457 0.6918 5.5699 20 6 1.6815 1.4907 6.5476 21 6 2.3870 2.5627 7.0626 22 6 3.6568 2.8503 6.5960 23 6 4.2283 2.0552 5.6179 24 8 5.4787 2.3185 5.1528 25 6 6.2682 1.1932 4.7588 26 6 5.4409 0.2687 3.9027 27 8 5.9687 -0.3887 3.0306 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.7087 1.1614 -3.4844 32 1 0.7376 -2.1444 1.9992 33 1 1.5296 -2.5968 0.4707 34 1 2.4629 -2.5819 1.9863 35 1 3.9006 -1.6025 3.0176 36 1 2.4472 -1.0881 3.9072 37 1 1.6954 -0.1481 5.1727 38 1 0.6889 1.2737 6.9136 39 1 1.9427 3.1807 7.8289 40 1 4.2033 3.6909 6.9974 41 1 6.6072 0.6591 5.6464 42 1 7.1322 1.5379 4.1907 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264078355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:52 Heat of formation + Delta-G solvation = -54.325012 kcal Electronic energy + Delta-G solvation = -27324.738091 eV Core-core repulsion = 23464.203656 eV Total energy + Delta-G solvation = -3860.534435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.63981 -39.27881 -38.69568 -37.58070 -35.78635 -35.10588 -32.91157 -30.84332 -30.35656 -29.86352 -28.85672 -26.57527 -26.04944 -25.21593 -23.62164 -22.73945 -21.16726 -19.64494 -19.21333 -18.50397 -17.41241 -17.08908 -16.67844 -16.35127 -15.58690 -15.43997 -15.37850 -15.03083 -14.88406 -14.45304 -14.39820 -14.06939 -13.81045 -13.30240 -13.03989 -12.75001 -12.60814 -12.48984 -12.19814 -11.87079 -11.63095 -11.54257 -11.38302 -11.32647 -11.06918 -10.82030 -10.78116 -10.67335 -10.27385 -10.17609 -10.00812 -9.22405 -9.07133 -8.77546 -8.43464 -7.87618 -7.64446 -6.07501 -4.15493 0.98769 1.13828 2.23977 2.39672 3.19754 3.24122 3.27136 3.34236 3.38359 3.55376 3.91599 3.93508 4.40068 4.49732 4.74456 4.78361 4.89779 4.97229 5.04541 5.10672 5.17365 5.24097 5.29464 5.36136 5.49782 5.67315 5.83537 5.94043 6.01490 6.22182 6.31116 6.32192 6.49438 6.72635 6.79408 6.80663 7.03511 7.23552 7.36841 7.50211 7.69673 7.70432 8.00267 8.18187 8.46437 8.80862 8.98431 9.50779 10.97891 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.003762 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.053783 B = 7441.837753 C = 8047.025072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.259 3.741 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.590 5.590 13 C 0.080 3.920 14 C 0.489 3.511 15 O -0.537 6.537 16 C 0.088 3.912 17 N -0.532 5.532 18 C 0.114 3.886 19 C -0.127 4.127 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.109 4.109 23 C 0.079 3.921 24 O -0.301 6.301 25 C 0.057 3.943 26 C 0.491 3.509 27 O -0.502 6.502 28 H 0.094 0.906 29 H 0.030 0.970 30 H 0.010 0.990 31 H 0.263 0.737 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.097 0.903 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.757 -2.012 21.484 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.159 3.841 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.322 5.322 13 C -0.064 4.064 14 C 0.274 3.726 15 O -0.415 6.415 16 C -0.037 4.037 17 N -0.256 5.256 18 C 0.019 3.981 19 C -0.147 4.147 20 C -0.127 4.127 21 C -0.136 4.136 22 C -0.128 4.128 23 C 0.033 3.967 24 O -0.216 6.216 25 C -0.021 4.021 26 C 0.279 3.721 27 O -0.375 6.375 28 H 0.112 0.888 29 H 0.049 0.951 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.115 0.885 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.263 -1.516 20.629 20.940 hybrid contribution 0.120 -0.830 -1.129 1.407 sum 3.383 -2.346 19.499 19.929 Atomic orbital electron populations 1.22071 0.98040 0.99392 1.00805 1.18953 0.90884 0.94511 0.79780 0.92012 1.21312 1.31845 1.13074 0.90276 0.92216 1.24894 0.94916 0.94963 0.98983 1.69881 1.36345 1.22560 1.23782 0.86481 0.79231 0.79296 0.82338 1.20578 1.21065 1.19884 1.48229 1.48879 1.11599 1.23463 1.21657 0.98679 0.83269 1.02816 1.20524 0.79868 0.87604 0.84616 1.90687 1.57631 1.16871 1.76297 1.21669 0.96708 0.92898 0.92455 1.45206 1.07315 1.39545 1.33532 1.18089 0.94849 0.93219 0.91949 1.20688 0.93534 1.01594 0.98897 1.20956 1.00011 0.95170 0.96588 1.20945 0.93866 0.98047 1.00743 1.20491 0.96572 1.00658 0.95054 1.18609 0.85784 0.95406 0.96913 1.86217 1.23850 1.31741 1.79745 1.23158 0.93652 0.86374 0.98916 1.21481 0.82244 0.83382 0.85019 1.90794 1.70931 1.44491 1.31296 0.88797 0.95115 0.97070 0.92671 0.93617 0.89690 0.92949 0.86500 0.87253 0.85081 0.85142 0.85033 0.84490 0.88504 0.83782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.97 37.16 0.33 -3.14 16 2 C 0.26 6.75 2.64 -69.09 -0.18 6.57 16 3 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.53 -14.53 7.99 -34.44 -0.28 -14.81 16 5 H 0.06 1.63 7.33 -52.49 -0.38 1.24 16 6 C 0.06 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -25.52 11.32 55.43 0.63 -24.90 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.59 -12.75 2.75 -175.27 -0.48 -13.23 16 13 C 0.08 1.30 9.24 59.85 0.55 1.85 16 14 C 0.49 10.52 7.74 -10.98 -0.09 10.44 16 15 O -0.54 -14.08 15.76 5.56 0.09 -13.99 16 16 C 0.09 1.39 4.23 -5.19 -0.02 1.36 16 17 N -0.53 -8.50 2.21 -114.50 -0.25 -8.75 16 18 C 0.11 1.62 6.39 -83.49 -0.53 1.09 16 19 C -0.13 -1.51 9.36 -39.46 -0.37 -1.88 16 20 C -0.11 -1.05 10.04 -39.55 -0.40 -1.45 16 21 C -0.12 -1.07 10.04 -39.54 -0.40 -1.47 16 22 C -0.11 -1.16 10.00 -39.50 -0.39 -1.56 16 23 C 0.08 1.07 6.44 -39.09 -0.25 0.82 16 24 O -0.30 -4.12 10.45 -19.71 -0.21 -4.32 16 25 C 0.06 0.68 7.17 36.02 0.26 0.93 16 26 C 0.49 7.99 7.67 -10.83 -0.08 7.90 16 27 O -0.50 -9.73 16.77 5.55 0.09 -9.64 16 28 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 29 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.49 7.02 -51.93 -0.36 1.13 16 34 H 0.05 0.69 6.44 -51.93 -0.33 0.35 16 35 H 0.12 1.75 6.75 -51.93 -0.35 1.40 16 36 H 0.11 1.30 5.93 -51.93 -0.31 0.99 16 37 H 0.13 1.37 6.12 -52.49 -0.32 1.05 16 38 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.14 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -36.27 348.60 -7.07 -43.34 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.23 Total: 1.43 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -1.94 Total: 8.37 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.11 Total: -46.88 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.03 Total: -27.96 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.27 -7.07 -43.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264078355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.989 kcal (2) G-P(sol) polarization free energy of solvation -36.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds