Wall clock time and date at job start Tue Mar 31 2020 12:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47034 * 2 1 4 4 C 1.50701 * 109.47438 * 240.00260 * 2 1 3 5 5 H 1.07994 * 119.99964 * 240.00059 * 4 2 1 6 6 C 1.37883 * 120.00057 * 59.99833 * 4 2 1 7 7 N 1.31519 * 119.99788 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00122 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47558 * 89.99867 * 8 6 4 10 10 H 1.48502 * 109.47067 * 210.00278 * 8 6 4 11 11 H 1.48503 * 109.47068 * 329.99523 * 8 6 4 12 12 N 1.46496 * 109.47337 * 120.00157 * 2 1 3 13 13 C 1.46498 * 119.99922 * 59.99659 * 12 2 1 14 14 C 1.34780 * 120.00012 * 240.00181 * 12 2 1 15 15 O 1.21282 * 119.99810 * 359.97438 * 14 12 2 16 16 C 1.50701 * 119.99775 * 179.97438 * 14 12 2 17 17 N 1.46502 * 109.46838 * 179.97438 * 16 14 12 18 18 C 1.40216 * 120.50436 * 90.00446 * 17 16 14 19 19 C 1.38498 * 120.73561 * 15.46093 * 18 17 16 20 20 C 1.38294 * 119.81153 * 180.02562 * 19 18 17 21 21 C 1.38276 * 120.19711 * 359.72352 * 20 19 18 22 22 C 1.38312 * 120.26338 * 0.53657 * 21 20 19 23 23 C 1.38393 * 119.87128 * 359.44994 * 22 21 20 24 24 O 1.35990 * 120.67538 * 180.37770 * 23 22 21 25 25 C 1.42997 * 116.71285 * 147.15330 * 24 23 22 26 26 C 1.35085 * 120.51141 * 269.98142 * 17 16 14 27 27 O 1.21294 * 120.13524 * 1.67228 * 26 17 16 28 28 H 1.09001 * 109.47124 * 59.99852 * 1 2 3 29 29 H 1.08997 * 109.47335 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47311 * 299.99828 * 1 2 3 31 31 H 0.96998 * 119.99801 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47332 * 270.00390 * 13 12 2 33 33 H 1.08997 * 109.47010 * 30.00884 * 13 12 2 34 34 H 1.09005 * 109.47134 * 150.00076 * 13 12 2 35 35 H 1.09001 * 109.46898 * 60.00670 * 16 14 12 36 36 H 1.08994 * 109.47387 * 300.00018 * 16 14 12 37 37 H 1.07991 * 120.09727 * 0.07867 * 19 18 17 38 38 H 1.07997 * 119.90092 * 180.02562 * 20 19 18 39 39 H 1.08008 * 119.87003 * 180.24533 * 21 20 19 40 40 H 1.08002 * 120.06867 * 179.73629 * 22 21 20 41 41 H 1.08997 * 109.44602 * 286.34440 * 25 24 23 42 42 H 1.09002 * 109.41307 * 166.43436 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3215 -1.1201 -4.0080 9 1 1.3430 -2.1615 -4.4120 10 1 2.4867 -0.1411 -5.1123 11 1 3.6295 -1.7580 -3.7123 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0356 2.0833 15 8 3.0865 1.1254 1.8911 16 6 3.2951 -0.7459 3.3140 17 7 4.1095 0.1747 4.1111 18 6 3.5191 0.9715 5.1023 19 6 2.2457 0.6918 5.5699 20 6 1.6815 1.4907 6.5476 21 6 2.3870 2.5627 7.0626 22 6 3.6568 2.8503 6.5960 23 6 4.2283 2.0552 5.6179 24 8 5.4787 2.3185 5.1528 25 6 6.2682 1.1932 4.7588 26 6 5.4409 0.2687 3.9027 27 8 5.9687 -0.3887 3.0306 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.7087 1.1614 -3.4844 32 1 0.7376 -2.1444 1.9992 33 1 1.5296 -2.5968 0.4707 34 1 2.4629 -2.5819 1.9863 35 1 3.9006 -1.6025 3.0176 36 1 2.4472 -1.0881 3.9072 37 1 1.6954 -0.1481 5.1727 38 1 0.6889 1.2737 6.9136 39 1 1.9427 3.1807 7.8289 40 1 4.2033 3.6909 6.9974 41 1 6.6072 0.6591 5.6464 42 1 7.1322 1.5379 4.1907 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264078355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:51 Heat of formation + Delta-G solvation = -79.252765 kcal Electronic energy + Delta-G solvation = -27325.819039 eV Core-core repulsion = 23464.203656 eV Total energy + Delta-G solvation = -3861.615383 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.69730 -40.76694 -39.91897 -38.55488 -37.32294 -36.56057 -34.88682 -32.06567 -31.63488 -30.83862 -30.26883 -27.77791 -27.47119 -27.30202 -24.63694 -23.83288 -22.76406 -20.77089 -20.23493 -20.04586 -18.70317 -18.53911 -18.13409 -17.81555 -17.12931 -16.75095 -16.45867 -16.35898 -16.25956 -15.88853 -15.47865 -15.17382 -15.07439 -14.65784 -14.41940 -14.15511 -13.99701 -13.78526 -13.57661 -13.19336 -13.12099 -12.98699 -12.87607 -12.73379 -12.69195 -12.26974 -12.24184 -12.19717 -12.17603 -11.86730 -11.24147 -11.16028 -10.73905 -10.53842 -9.65713 -9.41394 -8.89092 -8.19400 -6.36223 0.07118 0.31030 1.07131 1.36456 1.36810 1.39286 1.48807 1.63423 2.27457 2.28563 2.44028 2.73550 2.92475 3.08396 3.53140 3.64251 3.80973 3.94225 3.98804 4.05585 4.15514 4.32172 4.39542 4.40244 4.54951 4.67714 4.70961 4.72592 4.86365 4.95407 4.99607 5.02832 5.24551 5.29205 5.42776 5.53151 5.53714 5.61315 5.70468 5.80631 5.99289 6.11649 6.26779 6.51847 6.71183 6.72231 7.22774 7.39032 8.84966 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.003762 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.053783 B = 7441.837753 C = 8047.025072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.263 3.737 3 H 0.001 0.999 4 C -0.542 4.542 5 H 0.058 0.942 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.965 3.035 9 H -0.262 1.262 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.596 5.596 13 C 0.073 3.927 14 C 0.479 3.521 15 O -0.598 6.598 16 C 0.099 3.901 17 N -0.537 5.537 18 C 0.077 3.923 19 C -0.135 4.135 20 C -0.107 4.107 21 C -0.106 4.106 22 C -0.113 4.113 23 C 0.054 3.946 24 O -0.316 6.316 25 C 0.061 3.939 26 C 0.477 3.523 27 O -0.549 6.549 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.021 0.979 31 H 0.265 0.735 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.126 0.874 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.163 0.837 39 H 0.168 0.832 40 H 0.157 0.843 41 H 0.135 0.865 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 -3.312 23.853 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.160 3.840 3 H 0.019 0.981 4 C -0.580 4.580 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.790 3.210 9 H -0.187 1.187 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.327 5.327 13 C -0.069 4.069 14 C 0.266 3.734 15 O -0.479 6.479 16 C -0.026 4.026 17 N -0.261 5.261 18 C -0.017 4.017 19 C -0.155 4.155 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.132 4.132 23 C 0.008 3.992 24 O -0.231 6.231 25 C -0.017 4.017 26 C 0.267 3.733 27 O -0.426 6.426 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.144 0.856 36 H 0.171 0.829 37 H 0.161 0.839 38 H 0.180 0.820 39 H 0.186 0.814 40 H 0.174 0.826 41 H 0.153 0.847 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.272 -2.845 23.054 23.340 hybrid contribution 0.350 -0.337 -1.767 1.832 sum 2.622 -3.181 21.287 21.683 Atomic orbital electron populations 1.21823 0.96483 1.00346 0.99967 1.18528 0.91982 0.91857 0.81585 0.98092 1.21572 1.32008 1.13136 0.91296 0.92347 1.25740 0.95024 0.95629 1.02025 1.70024 1.37225 1.23775 1.24481 0.85455 0.78789 0.78381 0.78397 1.18691 1.21048 1.19995 1.48238 1.48723 1.13578 1.22138 1.21974 1.01655 0.80054 1.03201 1.21562 0.78797 0.87159 0.85897 1.90648 1.59643 1.19753 1.77903 1.21663 0.98255 0.92204 0.90454 1.45311 1.07332 1.39738 1.33682 1.18443 0.96270 0.94197 0.92744 1.21000 0.92709 1.02442 0.99364 1.21400 1.01206 0.94499 0.95449 1.21437 0.92887 0.97665 1.00424 1.20881 0.97370 1.00613 0.94337 1.19038 0.85889 0.96157 0.98112 1.86176 1.24364 1.32539 1.80020 1.23344 0.92795 0.85697 0.99834 1.22344 0.82796 0.83276 0.84882 1.90751 1.71851 1.46628 1.33393 0.91529 0.93032 0.95949 0.92573 0.90223 0.91030 0.89438 0.85647 0.82889 0.83915 0.81986 0.81430 0.82582 0.84722 0.82566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.21 8.97 71.98 0.65 -5.56 16 2 C 0.26 14.16 2.64 44.25 0.12 14.28 16 3 H 0.00 0.07 6.90 -2.39 -0.02 0.06 16 4 C -0.54 -30.59 7.99 25.60 0.20 -30.39 16 5 H 0.06 3.23 7.33 -2.91 -0.02 3.21 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -54.20 11.32 21.45 0.24 -53.95 16 8 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 9 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 N -0.60 -25.90 2.75 -826.81 -2.28 -28.17 16 13 C 0.07 2.23 9.24 127.77 1.18 3.41 16 14 C 0.48 20.99 7.74 87.66 0.68 21.67 16 15 O -0.60 -33.05 15.76 -3.04 -0.05 -33.10 16 16 C 0.10 3.05 4.23 85.63 0.36 3.41 16 17 N -0.54 -17.14 2.21 -634.39 -1.40 -18.54 16 18 C 0.08 2.14 6.39 38.14 0.24 2.38 16 19 C -0.14 -2.93 9.36 22.35 0.21 -2.72 16 20 C -0.11 -1.71 10.04 22.29 0.22 -1.49 16 21 C -0.11 -1.56 10.04 22.30 0.22 -1.34 16 22 C -0.11 -2.18 10.00 22.32 0.22 -1.96 16 23 C 0.05 1.42 6.44 22.59 0.15 1.56 16 24 O -0.32 -8.62 10.45 -93.44 -0.98 -9.60 16 25 C 0.06 1.43 7.17 71.24 0.51 1.94 16 26 C 0.48 15.88 7.67 87.62 0.67 16.55 16 27 O -0.55 -22.11 16.77 -3.07 -0.05 -22.17 16 28 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16 29 H 0.05 2.23 7.67 -2.39 -0.02 2.21 16 30 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 2.40 7.02 -2.39 -0.02 2.39 16 34 H 0.09 2.05 6.44 -2.38 -0.02 2.03 16 35 H 0.13 3.64 6.75 -2.39 -0.02 3.62 16 36 H 0.15 3.22 5.93 -2.39 -0.01 3.21 16 37 H 0.14 2.58 6.12 -2.92 -0.02 2.56 16 38 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 41 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.16 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -85.43 348.60 4.66 -80.77 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 1.05 Total: 15.18 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 6.09 Total: 23.08 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -3.43 Total: -100.67 kcal Atomic # 8 Polarization: -63.78 SS G_CDS: -1.08 Total: -64.86 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -85.43 4.66 -80.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264078355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.522 kcal (2) G-P(sol) polarization free energy of solvation -85.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds