Wall clock time and date at job start Tue Mar 31 2020 12:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36000 * 117.00076 * 2 1 4 4 C 1.38162 * 120.00159 * 359.97438 * 3 2 1 5 5 C 1.39747 * 119.84802 * 180.02562 * 4 3 2 6 6 C 1.43200 * 120.08041 * 180.02562 * 5 4 3 7 7 N 5.84110 * 81.26528 * 359.97438 * 2 1 3 8 8 C 1.39738 * 119.84527 * 0.02562 * 5 4 3 9 9 C 1.37823 * 119.99138 * 359.71731 * 8 5 4 10 10 C 1.38793 * 120.15763 * 0.55556 * 9 8 5 11 11 O 1.35848 * 119.92649 * 179.72231 * 10 9 8 12 12 C 1.42903 * 116.99584 * 359.72193 * 11 10 9 13 13 C 1.50699 * 109.47132 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99799 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99910 * 180.02562 * 13 12 11 16 16 C 1.46497 * 120.00033 * 0.02562 * 15 13 12 17 17 C 1.46497 * 119.99894 * 180.02562 * 15 13 12 18 18 H 1.09007 * 109.47078 * 359.97438 * 17 15 13 19 19 C 1.53000 * 109.47021 * 240.00308 * 17 15 13 20 20 C 1.50694 * 109.47115 * 120.00089 * 17 15 13 21 21 H 1.08000 * 120.00563 * 359.97438 * 20 17 15 22 22 C 1.37885 * 119.99902 * 180.02562 * 20 17 15 23 23 N 1.31516 * 119.99913 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 17 25 25 H 1.48506 * 109.46985 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47276 * 299.99832 * 24 22 20 27 27 H 1.48498 * 109.47150 * 60.00043 * 24 22 20 28 28 H 1.09007 * 109.46619 * 59.99956 * 1 2 3 29 29 H 1.08996 * 109.47120 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47341 * 300.00693 * 1 2 3 31 31 H 1.08003 * 120.07686 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.99842 * 179.97438 * 8 5 4 33 33 H 1.07996 * 119.91828 * 180.29634 * 9 8 5 34 34 H 1.09005 * 109.46887 * 60.00527 * 12 11 10 35 35 H 1.09000 * 109.47562 * 300.00625 * 12 11 10 36 36 H 1.09001 * 109.46905 * 269.99961 * 16 15 13 37 37 H 1.09005 * 109.47144 * 29.99902 * 16 15 13 38 38 H 1.08993 * 109.47302 * 150.00089 * 16 15 13 39 39 H 1.08998 * 109.47089 * 59.99825 * 19 17 15 40 40 H 1.08995 * 109.47131 * 179.97438 * 19 17 15 41 41 H 1.09002 * 109.47106 * 299.99878 * 19 17 15 42 42 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2940 2.3705 -0.0005 5 6 1.9318 3.6140 -0.0011 6 6 1.1568 4.8181 -0.0011 7 7 0.5420 5.7734 -0.0026 8 6 3.3277 3.6796 -0.0016 9 6 4.0719 2.5195 0.0043 10 6 3.4384 1.2846 -0.0009 11 8 4.1766 0.1442 -0.0007 12 6 5.5980 0.2916 -0.0013 13 6 6.2441 -1.0698 -0.0004 14 8 5.5553 -2.0680 0.0001 15 7 7.5876 -1.1781 -0.0003 16 6 8.4197 0.0276 -0.0004 17 6 8.2158 -2.5016 0.0000 18 1 7.4431 -3.2705 0.0005 19 6 9.0858 -2.6528 1.2495 20 6 9.0731 -2.6510 -1.2302 21 1 9.1428 -1.8413 -1.9415 22 6 9.7678 -3.8219 -1.4484 23 7 9.6825 -4.8081 -0.5825 24 14 10.8299 -4.0073 -2.9738 25 1 11.4668 -5.3488 -2.9735 26 1 9.9851 -3.8602 -4.1861 27 1 11.8828 -2.9601 -2.9742 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2154 2.3155 -0.0014 32 1 3.8231 4.6392 -0.0025 33 1 5.1506 2.5716 0.0087 34 1 5.9067 0.8404 0.8884 35 1 5.9061 0.8399 -0.8915 36 1 8.6261 0.3265 -1.0281 37 1 7.8934 0.8323 0.5133 38 1 9.3584 -0.1787 0.5136 39 1 8.4657 -2.5448 2.1393 40 1 9.5528 -3.6377 1.2499 41 1 9.8584 -1.8839 1.2495 42 1 10.1710 -5.6319 -0.7362 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264138491.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:06 Heat of formation + Delta-G solvation = -61.187142 kcal Electronic energy + Delta-G solvation = -25775.931026 eV Core-core repulsion = 21915.099026 eV Total energy + Delta-G solvation = -3860.831999 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.77783 -40.74868 -39.34172 -38.60491 -37.16052 -36.87875 -34.82320 -32.11024 -31.64431 -31.23924 -28.91966 -28.22149 -27.55584 -27.23363 -24.54229 -23.72506 -22.65740 -20.53309 -19.99635 -19.33569 -18.51885 -17.90608 -17.51745 -17.45206 -17.40672 -16.90122 -16.59104 -16.15533 -15.68728 -15.54134 -15.10325 -14.93896 -14.73011 -14.63856 -14.45855 -14.02814 -13.96631 -13.44244 -13.43455 -13.32302 -13.26883 -12.99082 -12.88158 -12.68812 -12.59515 -12.37726 -12.24375 -12.15493 -12.11303 -12.06698 -11.90027 -11.16566 -10.66206 -10.45876 -9.85415 -9.34042 -8.92192 -8.12174 -6.28779 -0.26378 0.28357 1.43832 1.46431 1.53252 1.60202 1.65875 1.73714 1.88244 2.35751 2.42097 2.70406 2.80933 2.85552 3.16072 3.54543 3.81475 3.90611 4.05313 4.10807 4.14405 4.18197 4.39544 4.42855 4.50961 4.62632 4.74382 4.74518 4.84457 4.85890 4.92411 5.07638 5.12554 5.12814 5.22997 5.47162 5.49694 5.63021 5.68599 5.99612 6.08860 6.17992 6.43776 6.54115 6.78912 6.80836 7.31966 7.47430 8.92015 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021887 B = 0.002593 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.004431 B =10795.859102 C =11314.994988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.334 6.334 3 C 0.079 3.921 4 C -0.117 4.117 5 C -0.041 4.041 6 C 0.287 3.713 7 N -0.464 5.464 8 C -0.044 4.044 9 C -0.170 4.170 10 C 0.115 3.885 11 O -0.310 6.310 12 C 0.050 3.950 13 C 0.491 3.509 14 O -0.595 6.595 15 N -0.595 5.595 16 C 0.073 3.927 17 C 0.261 3.739 18 H 0.005 0.995 19 C -0.133 4.133 20 C -0.537 4.537 21 H 0.065 0.935 22 C 0.013 3.987 23 N -0.919 5.919 24 Si 0.965 3.035 25 H -0.287 1.287 26 H -0.278 1.278 27 H -0.260 1.260 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.161 0.839 32 H 0.170 0.830 33 H 0.179 0.821 34 H 0.134 0.866 35 H 0.127 0.873 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.021 0.979 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.660 18.925 2.257 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.248 6.248 3 C 0.033 3.967 4 C -0.139 4.139 5 C -0.045 4.045 6 C -0.027 4.027 7 N -0.141 5.141 8 C -0.065 4.065 9 C -0.188 4.188 10 C 0.068 3.932 11 O -0.223 6.223 12 C -0.028 4.028 13 C 0.279 3.721 14 O -0.476 6.476 15 N -0.327 5.327 16 C -0.068 4.068 17 C 0.159 3.841 18 H 0.023 0.977 19 C -0.191 4.191 20 C -0.575 4.575 21 H 0.083 0.917 22 C -0.187 4.187 23 N -0.557 5.557 24 Si 0.790 3.210 25 H -0.212 1.212 26 H -0.204 1.204 27 H -0.184 1.184 28 H 0.089 0.911 29 H 0.126 0.874 30 H 0.090 0.910 31 H 0.178 0.822 32 H 0.187 0.813 33 H 0.196 0.804 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.092 0.908 39 H 0.040 0.960 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.853 19.302 2.297 22.767 hybrid contribution 0.539 -1.162 -0.707 1.463 sum -11.314 18.139 1.590 21.438 Atomic orbital electron populations 1.23385 0.76470 1.05453 1.02621 1.86280 1.23371 1.26079 1.89055 1.18280 0.89369 0.85652 1.03398 1.21074 1.01062 0.89041 1.02676 1.15654 0.92236 0.85919 1.10682 1.25625 0.92470 0.92428 0.92206 1.81301 1.09780 1.11974 1.11004 1.21188 0.90541 0.99835 0.94923 1.21359 1.02599 0.88935 1.05917 1.19070 0.88720 0.86656 0.98775 1.86249 1.18510 1.29444 1.88049 1.22776 0.78659 0.94477 1.06840 1.20882 0.82821 0.91370 0.77004 1.90686 1.63535 1.41141 1.52202 1.48166 1.04693 1.09504 1.70348 1.22001 0.96414 0.85524 1.02884 1.18553 0.91156 0.79662 0.94726 0.97714 1.21881 0.99083 1.02863 0.95321 1.21552 1.27877 1.01131 1.06965 0.91720 1.25761 0.98025 0.95290 0.99606 1.70026 1.43112 1.05532 1.37079 0.85507 0.78826 0.77483 0.79180 1.21233 1.20376 1.18409 0.91077 0.87385 0.90963 0.82158 0.81277 0.80408 0.84887 0.85500 0.91849 0.87657 0.90845 0.96030 0.91548 0.92820 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -8.45 10.27 -79.52 -0.82 -9.27 16 3 C 0.08 1.70 6.69 22.53 0.15 1.85 16 4 C -0.12 -1.78 8.74 22.62 0.20 -1.59 16 5 C -0.04 -0.56 5.74 -21.31 -0.12 -0.68 16 6 C 0.29 4.80 15.33 88.33 1.35 6.15 16 7 N -0.46 -10.11 18.54 19.00 0.35 -9.76 16 8 C -0.04 -0.46 9.75 22.53 0.22 -0.24 16 9 C -0.17 -2.16 9.01 22.30 0.20 -1.96 16 10 C 0.12 2.53 6.71 22.68 0.15 2.68 16 11 O -0.31 -9.38 9.44 -65.37 -0.62 -10.00 16 12 C 0.05 1.22 3.77 71.24 0.27 1.49 16 13 C 0.49 19.50 7.75 87.66 0.68 20.18 16 14 O -0.59 -31.34 15.83 16.01 0.25 -31.09 16 15 N -0.60 -23.37 2.75 -826.81 -2.28 -25.64 16 16 C 0.07 1.88 9.48 127.77 1.21 3.10 16 17 C 0.26 13.26 2.63 44.24 0.12 13.37 16 18 H 0.00 0.30 6.90 -2.38 -0.02 0.29 16 19 C -0.13 -6.19 8.95 71.98 0.64 -5.55 16 20 C -0.54 -28.37 8.37 25.60 0.21 -28.15 16 21 H 0.06 3.26 7.65 -2.91 -0.02 3.23 16 22 C 0.01 0.68 5.30 84.66 0.45 1.13 16 23 N -0.92 -52.60 11.32 21.45 0.24 -52.36 16 24 Si 0.96 42.24 29.54 68.60 2.03 44.26 16 25 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 28 H 0.07 0.77 7.66 -2.38 -0.02 0.75 16 29 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 31 H 0.16 1.74 6.28 -2.91 -0.02 1.73 16 32 H 0.17 0.75 8.06 -2.91 -0.02 0.72 16 33 H 0.18 1.10 6.27 -2.91 -0.02 1.08 16 34 H 0.13 2.04 6.90 -2.38 -0.02 2.02 16 35 H 0.13 2.16 7.63 -2.39 -0.02 2.15 16 36 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.11 1.54 6.44 -2.38 -0.02 1.53 16 38 H 0.07 1.97 6.43 -2.39 -0.02 1.95 16 39 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 3.49 6.07 -2.39 -0.01 3.47 16 41 H 0.05 2.20 6.66 -2.39 -0.02 2.19 16 42 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -81.69 360.39 7.07 -74.61 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 1.06 Total: 6.15 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 6.85 Total: 13.10 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -1.68 Total: -87.76 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -1.18 Total: -50.36 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -81.69 7.07 -74.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264138491.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.424 kcal (2) G-P(sol) polarization free energy of solvation -81.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds