Wall clock time and date at job start Tue Mar 31 2020 12:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36003 * 117.00532 * 2 1 4 4 C 1.38167 * 119.99278 * 359.97438 * 3 2 1 5 5 C 1.39747 * 119.84078 * 180.02562 * 4 3 2 6 6 C 1.43204 * 120.07904 * 180.02562 * 5 4 3 7 7 N 5.84105 * 81.26544 * 359.97438 * 2 1 3 8 8 C 1.39736 * 119.85156 * 0.02562 * 5 4 3 9 9 C 1.37824 * 119.98962 * 359.72466 * 8 5 4 10 10 C 1.38804 * 120.15418 * 0.54751 * 9 8 5 11 11 O 1.35851 * 119.91949 * 179.72218 * 10 9 8 12 12 C 1.42896 * 117.00106 * 359.73059 * 11 10 9 13 13 C 1.50694 * 109.47093 * 179.97438 * 12 11 10 14 14 O 1.21287 * 120.00211 * 359.97438 * 13 12 11 15 15 N 1.34781 * 120.00297 * 179.97438 * 13 12 11 16 16 C 1.46503 * 119.99458 * 359.97438 * 15 13 12 17 17 C 1.46502 * 120.00180 * 179.97438 * 15 13 12 18 18 H 1.08988 * 109.46989 * 359.97438 * 17 15 13 19 19 C 1.52999 * 109.46800 * 120.00415 * 17 15 13 20 20 C 1.50701 * 109.47064 * 240.00013 * 17 15 13 21 21 H 1.08005 * 119.99935 * 356.62305 * 20 17 15 22 22 C 1.37877 * 120.00206 * 176.62905 * 20 17 15 23 23 N 1.31514 * 119.99641 * 351.52449 * 22 20 17 24 24 Si 1.86799 * 120.00131 * 171.80826 * 22 20 17 25 25 H 1.48505 * 109.46565 * 264.97209 * 24 22 20 26 26 H 1.48494 * 109.47297 * 24.97223 * 24 22 20 27 27 H 1.48497 * 109.46920 * 144.97545 * 24 22 20 28 28 H 1.09000 * 109.47541 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47253 * 300.00048 * 1 2 3 30 30 H 1.09000 * 109.47332 * 59.99367 * 1 2 3 31 31 H 1.07992 * 120.08081 * 359.97438 * 4 3 2 32 32 H 1.07993 * 120.00577 * 179.97438 * 8 5 4 33 33 H 1.08002 * 119.92137 * 180.29291 * 9 8 5 34 34 H 1.09000 * 109.47431 * 59.99735 * 12 11 10 35 35 H 1.09000 * 109.46975 * 299.99829 * 12 11 10 36 36 H 1.09001 * 109.47202 * 269.99926 * 16 15 13 37 37 H 1.09003 * 109.47187 * 30.00605 * 16 15 13 38 38 H 1.09001 * 109.46679 * 149.99978 * 16 15 13 39 39 H 1.08992 * 109.47639 * 65.89827 * 19 17 15 40 40 H 1.08995 * 109.46632 * 185.90251 * 19 17 15 41 41 H 1.09009 * 109.46613 * 305.89429 * 19 17 15 42 42 H 0.96998 * 119.99879 * 180.27648 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2939 2.3705 -0.0005 5 6 1.9318 3.6139 -0.0011 6 6 1.1568 4.8181 -0.0011 7 7 0.5419 5.7733 -0.0026 8 6 3.3276 3.6796 -0.0016 9 6 4.0719 2.5196 0.0041 10 6 3.4383 1.2846 -0.0010 11 8 4.1766 0.1442 -0.0010 12 6 5.5979 0.2916 -0.0016 13 6 6.2441 -1.0698 -0.0009 14 8 5.5552 -2.0681 0.0005 15 7 7.5875 -1.1782 -0.0018 16 6 8.4196 0.0276 -0.0040 17 6 8.2157 -2.5017 -0.0005 18 1 7.4431 -3.2705 0.0015 19 6 9.0850 -2.6547 -1.2502 20 6 9.0738 -2.6493 1.2295 21 1 9.1877 -1.8194 1.9112 22 6 9.7135 -3.8438 1.4845 23 7 9.4462 -4.9024 0.7515 24 14 10.9541 -3.9603 2.8762 25 1 12.3224 -3.7506 2.3383 26 1 10.6569 -2.9195 3.8927 27 1 10.8694 -5.3036 3.5036 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.2154 2.3154 -0.0014 32 1 3.8231 4.6391 -0.0025 33 1 5.1506 2.5716 0.0085 34 1 5.9067 0.8404 0.8881 35 1 5.9060 0.8399 -0.8918 36 1 8.6252 0.3253 -1.0322 37 1 7.8938 0.8328 0.5093 38 1 9.3588 -0.1782 0.5094 39 1 9.9191 -1.9550 -1.2005 40 1 9.4682 -3.6737 -1.3035 41 1 8.4867 -2.4447 -2.1369 42 1 9.8933 -5.7438 0.9334 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264138493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:11 Heat of formation + Delta-G solvation = -41.356750 kcal Electronic energy + Delta-G solvation = -25772.863528 eV Core-core repulsion = 21912.891440 eV Total energy + Delta-G solvation = -3859.972089 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.96493 -39.44068 -38.31118 -37.78014 -36.16918 -35.33521 -32.93645 -31.06648 -30.86748 -29.92827 -27.79596 -27.57324 -26.18402 -25.23006 -23.74082 -22.85330 -21.19503 -19.76544 -18.55925 -18.39784 -17.10280 -16.77159 -16.57891 -16.40712 -15.96409 -15.70277 -15.42023 -15.00992 -14.54813 -14.33533 -14.14661 -14.06466 -13.91735 -13.55555 -12.92220 -12.81913 -12.71014 -12.54093 -12.43217 -12.27369 -11.83251 -11.71404 -11.66156 -11.50798 -11.36267 -11.15372 -11.04038 -10.92280 -10.78496 -10.30334 -10.23325 -9.28700 -9.19559 -9.02008 -8.45074 -8.14194 -7.72282 -6.12972 -4.18372 0.45288 0.92396 2.35810 2.62204 2.69499 2.99072 3.18563 3.23976 3.32096 3.34024 3.49987 3.56025 3.95492 4.35193 4.41203 4.50692 4.70959 4.75176 4.90593 4.93375 4.97904 5.02911 5.10191 5.19345 5.20269 5.29526 5.50090 5.57356 5.73615 5.87927 5.89212 6.11406 6.24086 6.65299 6.67673 6.78490 6.93903 7.17701 7.22520 7.32395 7.48118 7.63326 7.88190 8.10297 8.39410 8.77370 8.93195 9.46818 10.94655 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021972 B = 0.002598 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.062930 B =10775.902982 C =11336.656068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.294 6.294 3 C 0.101 3.899 4 C -0.128 4.128 5 C -0.041 4.041 6 C 0.263 3.737 7 N -0.426 5.426 8 C -0.057 4.057 9 C -0.183 4.183 10 C 0.144 3.856 11 O -0.268 6.268 12 C 0.037 3.963 13 C 0.505 3.495 14 O -0.524 6.524 15 N -0.589 5.589 16 C 0.078 3.922 17 C 0.258 3.742 18 H 0.070 0.930 19 C -0.140 4.140 20 C -0.531 4.531 21 H 0.061 0.939 22 C 0.067 3.933 23 N -0.884 5.884 24 Si 0.897 3.103 25 H -0.280 1.280 26 H -0.274 1.274 27 H -0.286 1.286 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.148 0.852 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.085 0.915 39 H 0.034 0.966 40 H 0.078 0.922 41 H 0.015 0.985 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.102 15.519 -2.918 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.207 6.207 3 C 0.055 3.945 4 C -0.149 4.149 5 C -0.045 4.045 6 C -0.052 4.052 7 N -0.102 5.102 8 C -0.078 4.078 9 C -0.202 4.202 10 C 0.095 3.905 11 O -0.179 6.179 12 C -0.042 4.042 13 C 0.290 3.710 14 O -0.400 6.400 15 N -0.323 5.323 16 C -0.066 4.066 17 C 0.158 3.842 18 H 0.088 0.912 19 C -0.199 4.199 20 C -0.570 4.570 21 H 0.079 0.921 22 C -0.136 4.136 23 N -0.521 5.521 24 Si 0.724 3.276 25 H -0.206 1.206 26 H -0.199 1.199 27 H -0.211 1.211 28 H 0.122 0.878 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.166 0.834 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.053 0.947 40 H 0.097 0.903 41 H 0.034 0.966 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.334 15.816 -2.943 20.272 hybrid contribution 1.001 -0.060 0.770 1.264 sum -11.334 15.756 -2.173 19.530 Atomic orbital electron populations 1.23146 0.78370 1.04565 1.01109 1.86335 1.21081 1.24730 1.88553 1.17990 0.89029 0.85352 1.02144 1.20958 1.00252 0.89773 1.03912 1.15568 0.91618 0.86710 1.10593 1.25602 0.93340 0.92855 0.93398 1.81263 1.08642 1.10687 1.09568 1.20848 0.91186 0.98803 0.97001 1.21066 1.01142 0.90333 1.07641 1.18680 0.88620 0.86473 0.96718 1.86317 1.17762 1.26927 1.86859 1.22818 0.79168 0.98924 1.03268 1.19712 0.83205 0.89297 0.78803 1.90731 1.62065 1.38059 1.49145 1.48180 1.03741 1.09500 1.70850 1.21689 0.97475 0.86727 1.00690 1.18999 0.93014 0.78180 0.93993 0.91248 1.22018 0.98788 1.02883 0.96223 1.21264 1.29302 0.98632 1.07775 0.92096 1.24900 0.96916 0.95253 0.96538 1.69959 1.41434 1.00571 1.40119 0.86514 0.81474 0.77596 0.82008 1.20599 1.19884 1.21134 0.87767 0.92582 0.92609 0.83864 0.84405 0.83403 0.89053 0.89178 0.93494 0.92957 0.89629 0.94681 0.90327 0.96555 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.29 -3.65 10.27 -34.42 -0.35 -4.01 16 3 C 0.10 1.14 6.69 -39.19 -0.26 0.88 16 4 C -0.13 -1.10 8.74 -39.04 -0.34 -1.44 16 5 C -0.04 -0.35 5.74 -106.85 -0.61 -0.96 16 6 C 0.26 2.55 15.33 -22.47 -0.34 2.20 16 7 N -0.43 -5.05 18.54 41.84 0.78 -4.27 16 8 C -0.06 -0.43 9.75 -39.17 -0.38 -0.81 16 9 C -0.18 -1.55 9.01 -39.52 -0.36 -1.91 16 10 C 0.14 1.71 6.71 -38.95 -0.26 1.45 16 11 O -0.27 -4.16 9.44 -46.95 -0.44 -4.60 16 12 C 0.04 0.50 3.77 36.00 0.14 0.64 16 13 C 0.51 10.02 7.75 -10.99 -0.09 9.94 16 14 O -0.52 -13.09 15.83 -14.36 -0.23 -13.32 16 15 N -0.59 -11.71 2.75 -175.26 -0.48 -12.19 16 16 C 0.08 1.13 9.35 59.85 0.56 1.69 16 17 C 0.26 6.32 2.52 -69.08 -0.17 6.15 16 18 H 0.07 2.02 6.89 -51.94 -0.36 1.66 16 19 C -0.14 -3.17 8.85 37.16 0.33 -2.84 16 20 C -0.53 -13.81 8.00 -34.44 -0.28 -14.09 16 21 H 0.06 1.54 7.22 -52.48 -0.38 1.16 16 22 C 0.07 1.79 5.24 -17.82 -0.09 1.70 16 23 N -0.88 -24.73 12.01 55.43 0.67 -24.07 16 24 Si 0.90 20.44 29.55 -169.99 -5.02 15.42 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 30 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.14 0.93 6.28 -52.49 -0.33 0.60 16 32 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.15 0.92 6.27 -52.49 -0.33 0.59 16 34 H 0.09 0.98 6.90 -51.93 -0.36 0.62 16 35 H 0.09 0.92 7.63 -51.93 -0.40 0.53 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.56 6.44 -51.93 -0.33 0.22 16 38 H 0.09 1.34 6.96 -51.93 -0.36 0.98 16 39 H 0.03 0.72 7.86 -51.93 -0.41 0.31 16 40 H 0.08 1.95 6.84 -51.93 -0.36 1.60 16 41 H 0.02 0.33 8.14 -51.92 -0.42 -0.10 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -34.21 362.37 -6.03 -40.24 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -5.23 Total: -2.41 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -1.17 Total: 3.75 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.96 Total: -40.53 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -1.02 Total: -21.93 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.21 -6.03 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264138493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.117 kcal (2) G-P(sol) polarization free energy of solvation -34.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds