Wall clock time and date at job start Tue Mar 31 2020 12:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36003 * 117.00532 * 2 1 4 4 C 1.38167 * 119.99278 * 359.97438 * 3 2 1 5 5 C 1.39747 * 119.84078 * 180.02562 * 4 3 2 6 6 C 1.43204 * 120.07904 * 180.02562 * 5 4 3 7 7 N 5.84105 * 81.26544 * 359.97438 * 2 1 3 8 8 C 1.39736 * 119.85156 * 0.02562 * 5 4 3 9 9 C 1.37824 * 119.98962 * 359.72466 * 8 5 4 10 10 C 1.38804 * 120.15418 * 0.54751 * 9 8 5 11 11 O 1.35851 * 119.91949 * 179.72218 * 10 9 8 12 12 C 1.42896 * 117.00106 * 359.73059 * 11 10 9 13 13 C 1.50694 * 109.47093 * 179.97438 * 12 11 10 14 14 O 1.21287 * 120.00211 * 359.97438 * 13 12 11 15 15 N 1.34781 * 120.00297 * 179.97438 * 13 12 11 16 16 C 1.46503 * 119.99458 * 359.97438 * 15 13 12 17 17 C 1.46502 * 120.00180 * 179.97438 * 15 13 12 18 18 H 1.08988 * 109.46989 * 359.97438 * 17 15 13 19 19 C 1.52999 * 109.46800 * 120.00415 * 17 15 13 20 20 C 1.50701 * 109.47064 * 240.00013 * 17 15 13 21 21 H 1.08005 * 119.99935 * 356.62305 * 20 17 15 22 22 C 1.37877 * 120.00206 * 176.62905 * 20 17 15 23 23 N 1.31514 * 119.99641 * 351.52449 * 22 20 17 24 24 Si 1.86799 * 120.00131 * 171.80826 * 22 20 17 25 25 H 1.48505 * 109.46565 * 264.97209 * 24 22 20 26 26 H 1.48494 * 109.47297 * 24.97223 * 24 22 20 27 27 H 1.48497 * 109.46920 * 144.97545 * 24 22 20 28 28 H 1.09000 * 109.47541 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47253 * 300.00048 * 1 2 3 30 30 H 1.09000 * 109.47332 * 59.99367 * 1 2 3 31 31 H 1.07992 * 120.08081 * 359.97438 * 4 3 2 32 32 H 1.07993 * 120.00577 * 179.97438 * 8 5 4 33 33 H 1.08002 * 119.92137 * 180.29291 * 9 8 5 34 34 H 1.09000 * 109.47431 * 59.99735 * 12 11 10 35 35 H 1.09000 * 109.46975 * 299.99829 * 12 11 10 36 36 H 1.09001 * 109.47202 * 269.99926 * 16 15 13 37 37 H 1.09003 * 109.47187 * 30.00605 * 16 15 13 38 38 H 1.09001 * 109.46679 * 149.99978 * 16 15 13 39 39 H 1.08992 * 109.47639 * 65.89827 * 19 17 15 40 40 H 1.08995 * 109.46632 * 185.90251 * 19 17 15 41 41 H 1.09009 * 109.46613 * 305.89429 * 19 17 15 42 42 H 0.96998 * 119.99879 * 180.27648 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2939 2.3705 -0.0005 5 6 1.9318 3.6139 -0.0011 6 6 1.1568 4.8181 -0.0011 7 7 0.5419 5.7733 -0.0026 8 6 3.3276 3.6796 -0.0016 9 6 4.0719 2.5196 0.0041 10 6 3.4383 1.2846 -0.0010 11 8 4.1766 0.1442 -0.0010 12 6 5.5979 0.2916 -0.0016 13 6 6.2441 -1.0698 -0.0009 14 8 5.5552 -2.0681 0.0005 15 7 7.5875 -1.1782 -0.0018 16 6 8.4196 0.0276 -0.0040 17 6 8.2157 -2.5017 -0.0005 18 1 7.4431 -3.2705 0.0015 19 6 9.0850 -2.6547 -1.2502 20 6 9.0738 -2.6493 1.2295 21 1 9.1877 -1.8194 1.9112 22 6 9.7135 -3.8438 1.4845 23 7 9.4462 -4.9024 0.7515 24 14 10.9541 -3.9603 2.8762 25 1 12.3224 -3.7506 2.3383 26 1 10.6569 -2.9195 3.8927 27 1 10.8694 -5.3036 3.5036 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.2154 2.3154 -0.0014 32 1 3.8231 4.6391 -0.0025 33 1 5.1506 2.5716 0.0085 34 1 5.9067 0.8404 0.8881 35 1 5.9060 0.8399 -0.8918 36 1 8.6252 0.3253 -1.0322 37 1 7.8938 0.8328 0.5093 38 1 9.3588 -0.1782 0.5094 39 1 9.9191 -1.9550 -1.2005 40 1 9.4682 -3.6737 -1.3035 41 1 8.4867 -2.4447 -2.1369 42 1 9.8933 -5.7438 0.9334 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264138493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:10 Heat of formation + Delta-G solvation = -63.186966 kcal Electronic energy + Delta-G solvation = -25773.810158 eV Core-core repulsion = 21912.891440 eV Total energy + Delta-G solvation = -3860.918718 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.77562 -40.74000 -39.33797 -38.60352 -37.14350 -36.87177 -34.79035 -32.14441 -31.65027 -31.26705 -28.94007 -28.22154 -27.48699 -27.23548 -24.54484 -23.73574 -22.68551 -20.53383 -19.99885 -19.33237 -18.52245 -17.90108 -17.52453 -17.47330 -17.35646 -16.88903 -16.58761 -16.12685 -15.67371 -15.55091 -15.09939 -14.94077 -14.71677 -14.63685 -14.39972 -13.99424 -13.90945 -13.60711 -13.42863 -13.31339 -13.26669 -13.01339 -12.84794 -12.73081 -12.59259 -12.37529 -12.24587 -12.22061 -12.10712 -12.05103 -11.89921 -11.19013 -10.63105 -10.46305 -9.85294 -9.34043 -8.92104 -8.14520 -6.27838 -0.26284 0.28438 1.44132 1.45062 1.55098 1.60283 1.66881 1.73785 1.88328 2.35870 2.42544 2.70800 2.81013 2.85711 3.15436 3.55291 3.81653 3.91447 4.05734 4.10915 4.14968 4.17657 4.39578 4.42881 4.53540 4.62716 4.74480 4.79352 4.82718 4.85420 4.88687 5.04584 5.12149 5.12886 5.23062 5.47581 5.51805 5.55710 5.69448 5.97013 6.07125 6.15127 6.43842 6.54274 6.80623 6.81238 7.32766 7.47794 8.92709 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021972 B = 0.002598 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.062930 B =10775.902982 C =11336.656068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.334 6.334 3 C 0.079 3.921 4 C -0.117 4.117 5 C -0.041 4.041 6 C 0.287 3.713 7 N -0.464 5.464 8 C -0.044 4.044 9 C -0.170 4.170 10 C 0.115 3.885 11 O -0.310 6.310 12 C 0.050 3.950 13 C 0.491 3.509 14 O -0.595 6.595 15 N -0.595 5.595 16 C 0.069 3.931 17 C 0.259 3.741 18 H 0.008 0.992 19 C -0.125 4.125 20 C -0.537 4.537 21 H 0.068 0.932 22 C 0.013 3.987 23 N -0.921 5.921 24 Si 0.964 3.036 25 H -0.268 1.268 26 H -0.265 1.265 27 H -0.291 1.291 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.161 0.839 32 H 0.170 0.830 33 H 0.179 0.821 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.027 0.973 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.124 19.295 -2.507 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.248 6.248 3 C 0.033 3.967 4 C -0.138 4.138 5 C -0.045 4.045 6 C -0.027 4.027 7 N -0.141 5.141 8 C -0.065 4.065 9 C -0.188 4.188 10 C 0.068 3.932 11 O -0.223 6.223 12 C -0.027 4.027 13 C 0.279 3.721 14 O -0.476 6.476 15 N -0.327 5.327 16 C -0.072 4.072 17 C 0.157 3.843 18 H 0.026 0.974 19 C -0.184 4.184 20 C -0.576 4.576 21 H 0.086 0.914 22 C -0.187 4.187 23 N -0.560 5.560 24 Si 0.789 3.211 25 H -0.193 1.193 26 H -0.189 1.189 27 H -0.218 1.218 28 H 0.126 0.874 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.178 0.822 32 H 0.187 0.813 33 H 0.196 0.804 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.343 19.670 -2.535 22.847 hybrid contribution 0.601 -1.198 0.621 1.477 sum -10.741 18.472 -1.915 21.453 Atomic orbital electron populations 1.23383 0.76474 1.05449 1.02621 1.86279 1.23369 1.26093 1.89057 1.18281 0.89376 0.85650 1.03405 1.21073 1.01057 0.89042 1.02676 1.15654 0.92240 0.85914 1.10684 1.25626 0.92469 0.92427 0.92204 1.81301 1.09777 1.11976 1.11006 1.21187 0.90536 0.99834 0.94923 1.21363 1.02599 0.88928 1.05912 1.19071 0.88719 0.86660 0.98770 1.86249 1.18532 1.29453 1.88045 1.22770 0.78641 0.94482 1.06827 1.20887 0.82861 0.91347 0.77017 1.90694 1.63564 1.41146 1.52157 1.48156 1.04673 1.09489 1.70364 1.22055 0.96632 0.85469 1.03067 1.18564 0.91385 0.79766 0.94594 0.97412 1.21791 0.99114 1.01606 0.95850 1.21586 1.28941 0.98770 1.08286 0.91409 1.25784 0.98820 0.94958 0.99092 1.70117 1.42685 1.01104 1.42076 0.85452 0.79349 0.77242 0.79022 1.19314 1.18911 1.21770 0.87395 0.91064 0.90974 0.82163 0.81268 0.80399 0.85440 0.84962 0.90719 0.88231 0.90939 0.92588 0.93297 0.95379 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -8.50 10.27 -79.56 -0.82 -9.32 16 3 C 0.08 1.70 6.69 22.52 0.15 1.86 16 4 C -0.12 -1.79 8.74 22.62 0.20 -1.59 16 5 C -0.04 -0.56 5.74 -21.31 -0.12 -0.69 16 6 C 0.29 4.80 15.33 88.33 1.35 6.16 16 7 N -0.46 -10.12 18.54 19.01 0.35 -9.77 16 8 C -0.04 -0.46 9.75 22.53 0.22 -0.24 16 9 C -0.17 -2.17 9.01 22.31 0.20 -1.96 16 10 C 0.12 2.53 6.71 22.68 0.15 2.69 16 11 O -0.31 -9.42 9.44 -65.41 -0.62 -10.04 16 12 C 0.05 1.23 3.77 71.23 0.27 1.49 16 13 C 0.49 19.51 7.75 87.65 0.68 20.19 16 14 O -0.59 -31.52 15.83 15.98 0.25 -31.26 16 15 N -0.59 -23.23 2.75 -826.79 -2.28 -25.50 16 16 C 0.07 1.75 9.35 127.77 1.19 2.94 16 17 C 0.26 13.09 2.52 44.24 0.11 13.20 16 18 H 0.01 0.49 6.89 -2.39 -0.02 0.48 16 19 C -0.12 -5.73 8.85 71.98 0.64 -5.09 16 20 C -0.54 -28.26 8.00 25.60 0.20 -28.05 16 21 H 0.07 3.38 7.22 -2.91 -0.02 3.36 16 22 C 0.01 0.71 5.24 84.65 0.44 1.15 16 23 N -0.92 -53.56 12.01 21.45 0.26 -53.30 16 24 Si 0.96 42.08 29.55 68.60 2.03 44.10 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 27 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 28 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 30 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 31 H 0.16 1.75 6.28 -2.91 -0.02 1.74 16 32 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 33 H 0.18 1.10 6.27 -2.91 -0.02 1.09 16 34 H 0.13 2.14 6.90 -2.39 -0.02 2.12 16 35 H 0.13 2.07 7.63 -2.39 -0.02 2.05 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.10 1.56 6.44 -2.39 -0.02 1.54 16 38 H 0.07 2.05 6.96 -2.39 -0.02 2.03 16 39 H 0.06 2.27 7.86 -2.39 -0.02 2.25 16 40 H 0.05 2.51 6.84 -2.39 -0.02 2.50 16 41 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -82.53 362.37 7.04 -75.50 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.06 Total: 6.21 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 6.80 Total: 13.39 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -1.67 Total: -88.57 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -1.18 Total: -50.62 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -82.53 7.04 -75.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264138493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.309 kcal (2) G-P(sol) polarization free energy of solvation -82.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds