Wall clock time and date at job start Tue Mar 31 2020 12:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47350 * 2 1 4 4 C 1.50694 * 109.47565 * 120.00666 * 2 1 3 5 5 H 1.08000 * 120.00415 * 119.99373 * 4 2 1 6 6 C 1.37881 * 119.99928 * 300.00068 * 4 2 1 7 7 N 1.31515 * 120.00234 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99754 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46975 * 89.99943 * 8 6 4 10 10 H 1.48503 * 109.47038 * 209.99863 * 8 6 4 11 11 H 1.48498 * 109.47341 * 330.00061 * 8 6 4 12 12 N 1.46503 * 109.47081 * 240.00699 * 2 1 3 13 13 C 1.46503 * 119.99852 * 299.99871 * 12 2 1 14 14 C 1.34779 * 120.00039 * 119.99673 * 12 2 1 15 15 O 1.21587 * 119.99932 * 356.54333 * 14 12 2 16 16 C 1.47543 * 119.99672 * 176.27051 * 14 12 2 17 17 C 1.39888 * 120.23378 * 333.49374 * 16 14 12 18 18 C 1.37781 * 120.09119 * 179.76123 * 17 16 14 19 19 C 1.38577 * 120.41524 * 0.50272 * 18 17 16 20 20 C 1.38398 * 120.16278 * 359.74660 * 19 18 17 21 21 C 1.39416 * 120.06661 * 0.02562 * 20 19 18 22 22 O 1.35680 * 119.55171 * 179.87608 * 21 20 19 23 23 C 1.43005 * 116.73936 * 327.22080 * 22 21 20 24 24 H 1.08993 * 109.42739 * 166.42345 * 23 22 21 25 25 C 1.53008 * 109.44486 * 286.35014 * 23 22 21 26 26 C 1.50758 * 109.62160 * 46.38769 * 23 22 21 27 27 O 1.21297 * 120.13509 * 148.71993 * 26 23 22 28 28 N 1.35088 * 119.72736 * 328.70992 * 26 23 22 29 29 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46733 * 299.99404 * 1 2 3 31 31 H 1.09002 * 109.47398 * 59.99444 * 1 2 3 32 32 H 0.96993 * 119.99908 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47053 * 276.06324 * 13 12 2 34 34 H 1.09001 * 109.46750 * 36.06190 * 13 12 2 35 35 H 1.09005 * 109.46970 * 156.05920 * 13 12 2 36 36 H 1.07994 * 119.95583 * 0.02562 * 17 16 14 37 37 H 1.07997 * 119.78840 * 180.21936 * 18 17 16 38 38 H 1.08009 * 119.91947 * 179.77360 * 19 18 17 39 39 H 1.08991 * 109.47131 * 180.15022 * 25 23 22 40 40 H 1.09004 * 109.46971 * 300.15577 * 25 23 22 41 41 H 1.09000 * 109.46703 * 60.14998 * 25 23 22 42 42 H 0.96994 * 120.52538 * 181.68139 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2396 2.4827 7 7 2.1374 -0.8599 3.5564 8 14 0.6259 1.2796 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9950 3.9072 11 1 0.8491 2.1772 1.4925 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0351 1.1454 -1.9237 16 6 3.3526 -0.7526 -3.2451 17 6 3.5762 -2.1320 -3.1804 18 6 4.0942 -2.7996 -4.2687 19 6 4.4072 -2.1115 -5.4300 20 6 4.1965 -0.7458 -5.5074 21 6 3.6686 -0.0576 -4.4160 22 8 3.4686 1.2816 -4.5024 23 6 4.3906 2.0191 -5.3093 24 1 3.9933 3.0172 -5.4935 25 6 5.7304 2.1310 -4.5788 26 6 4.5935 1.3091 -6.6236 27 8 4.8325 1.9449 -7.6286 28 7 4.5083 -0.0380 -6.6774 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.9034 -0.5284 4.4374 33 1 2.3541 -2.7369 -0.8824 34 1 0.6471 -2.2732 -1.0808 35 1 1.7286 -2.3125 -2.4940 36 1 3.3385 -2.6750 -2.2777 37 1 4.2615 -3.8652 -4.2146 38 1 4.8163 -2.6423 -6.2771 39 1 6.4326 2.6954 -5.1922 40 1 5.5842 2.6442 -3.6283 41 1 6.1286 1.1331 -4.3954 42 1 4.6608 -0.5083 -7.5119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264159106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:36 Heat of formation + Delta-G solvation = -42.574723 kcal Electronic energy + Delta-G solvation = -27466.757510 eV Core-core repulsion = 23606.732606 eV Total energy + Delta-G solvation = -3860.024904 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.81359 -39.77953 -38.47063 -37.69376 -35.54355 -35.31814 -32.88722 -32.09515 -31.22308 -29.78678 -29.15780 -26.54579 -25.18564 -25.05012 -24.24347 -23.45708 -21.44049 -19.74071 -19.45292 -18.62397 -17.76866 -17.00023 -16.67447 -16.36764 -15.82020 -15.57593 -15.52860 -15.20339 -14.86478 -14.67862 -14.53953 -14.08017 -13.38808 -13.17539 -13.06646 -12.97602 -12.72361 -12.40203 -12.30899 -12.26001 -12.14106 -12.01586 -11.72992 -11.34838 -11.28830 -11.12452 -10.79950 -10.58398 -10.20129 -10.13666 -9.66307 -9.36932 -9.13075 -8.78256 -8.64888 -8.13606 -7.74356 -6.16442 -4.17271 0.72336 0.91809 2.02986 2.48894 3.03645 3.21983 3.23339 3.36930 3.39915 3.55716 3.82198 3.85540 4.34262 4.39380 4.60528 4.69540 4.76907 4.94093 4.97712 5.10214 5.17447 5.37866 5.43479 5.46528 5.58925 5.71135 5.90168 5.92653 5.93036 6.12624 6.18342 6.20909 6.25223 6.32997 6.43209 6.46852 6.53527 6.83801 7.07355 7.17820 7.31728 7.50400 7.60340 8.13525 8.43919 8.81542 8.87716 9.44673 10.96122 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020413 B = 0.003905 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.375289 B = 7169.305481 C = 7953.180272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.231 3.769 3 H 0.064 0.936 4 C -0.528 4.528 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.895 5.895 8 Si 0.882 3.118 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.580 5.580 13 C 0.072 3.928 14 C 0.551 3.449 15 O -0.529 6.529 16 C -0.114 4.114 17 C -0.089 4.089 18 C -0.123 4.123 19 C -0.105 4.105 20 C 0.074 3.926 21 C 0.133 3.867 22 O -0.272 6.272 23 C 0.078 3.922 24 H 0.151 0.849 25 C -0.174 4.174 26 C 0.497 3.503 27 O -0.515 6.515 28 N -0.657 5.657 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.034 0.966 32 H 0.266 0.734 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.160 0.840 37 H 0.137 0.863 38 H 0.133 0.867 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.754 -4.088 -18.541 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.130 3.870 3 H 0.082 0.918 4 C -0.566 4.566 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.532 5.532 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.311 5.311 13 C -0.071 4.071 14 C 0.338 3.662 15 O -0.407 6.407 16 C -0.118 4.118 17 C -0.108 4.108 18 C -0.142 4.142 19 C -0.126 4.126 20 C -0.021 4.021 21 C 0.085 3.915 22 O -0.185 6.185 23 C 0.019 3.981 24 H 0.168 0.832 25 C -0.232 4.232 26 C 0.284 3.716 27 O -0.390 6.390 28 N -0.304 5.304 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.177 0.823 37 H 0.155 0.845 38 H 0.151 0.849 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.083 0.917 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 3.833 -2.822 -18.569 19.169 hybrid contribution -0.398 0.218 -0.264 0.525 sum 3.435 -2.604 -18.833 19.320 Atomic orbital electron populations 1.22455 0.99062 1.01098 0.99373 1.19313 0.90054 0.95242 0.82435 0.91803 1.21137 1.32772 1.14278 0.88410 0.90295 1.24847 0.95625 0.96545 0.95610 1.69866 1.45191 1.40171 0.97979 0.86936 0.80449 0.83905 0.77543 1.20389 1.22149 1.18713 1.47743 1.48942 1.11802 1.22606 1.22188 1.01854 0.83071 1.00028 1.17836 0.79722 0.86623 0.82047 1.90759 1.59656 1.14987 1.75295 1.19680 1.05467 0.94114 0.92572 1.22091 0.95958 0.92399 1.00385 1.20924 1.00347 1.00509 0.92414 1.20729 1.01255 0.91086 0.99567 1.17896 1.04775 0.92710 0.86761 1.18493 0.97874 0.83490 0.91680 1.86463 1.49531 1.15452 1.67018 1.22924 0.92947 0.96381 0.85869 0.83172 1.22324 0.94485 1.03952 1.02441 1.21634 0.75699 0.82184 0.92105 1.90787 1.46766 1.65146 1.36290 1.43670 1.68949 1.06878 1.10945 0.92497 0.93110 0.94692 0.92420 0.92006 0.91100 0.91197 0.82293 0.84469 0.84872 0.90244 0.88785 0.91684 0.74645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.64 37.16 0.32 -3.11 16 2 C 0.23 5.46 2.23 -69.08 -0.15 5.31 16 3 H 0.06 1.69 5.96 -51.93 -0.31 1.38 16 4 C -0.53 -14.17 8.95 -34.44 -0.31 -14.48 16 5 H 0.08 2.25 7.72 -52.49 -0.41 1.85 16 6 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 7 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 8 Si 0.88 21.53 24.37 -169.99 -4.14 17.39 16 9 H -0.28 -6.47 6.87 56.52 0.39 -6.08 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.26 -6.35 6.53 56.52 0.37 -5.99 16 12 N -0.58 -11.61 2.75 -176.48 -0.49 -12.10 16 13 C 0.07 1.09 8.01 59.85 0.48 1.57 16 14 C 0.55 11.06 7.41 -12.47 -0.09 10.97 16 15 O -0.53 -12.44 14.99 -14.33 -0.21 -12.66 16 16 C -0.11 -1.77 5.47 -104.91 -0.57 -2.35 16 17 C -0.09 -1.07 7.50 -39.13 -0.29 -1.36 16 18 C -0.12 -1.10 10.02 -39.62 -0.40 -1.49 16 19 C -0.11 -0.92 9.94 -39.40 -0.39 -1.31 16 20 C 0.07 0.84 6.54 -83.51 -0.55 0.29 16 21 C 0.13 1.95 5.83 -38.57 -0.22 1.72 16 22 O -0.27 -4.29 8.63 -38.37 -0.33 -4.62 16 23 C 0.08 0.98 3.81 -27.85 -0.11 0.88 16 24 H 0.15 1.64 8.14 -51.93 -0.42 1.22 16 25 C -0.17 -1.98 9.30 37.16 0.35 -1.63 16 26 C 0.50 6.22 7.19 -10.82 -0.08 6.14 16 27 O -0.52 -7.57 17.95 5.54 0.10 -7.47 16 28 N -0.66 -6.86 5.48 -9.67 -0.05 -6.91 16 29 H 0.06 1.11 6.70 -51.93 -0.35 0.76 16 30 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.06 0.91 7.00 -51.93 -0.36 0.55 16 34 H 0.07 1.06 6.46 -51.93 -0.34 0.73 16 35 H 0.07 0.85 5.05 -51.93 -0.26 0.58 16 36 H 0.16 1.79 4.58 -52.49 -0.24 1.55 16 37 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 0.76 7.81 -51.93 -0.41 0.36 16 42 H 0.41 3.25 8.89 -40.82 -0.36 2.89 16 LS Contribution 335.35 15.07 5.05 5.05 Total: -1.00 -34.45 335.35 -6.34 -40.78 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.92 Total: 2.99 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -2.12 Total: 3.18 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.23 Total: -44.63 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.45 Total: -24.75 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.14 Total: 17.39 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.45 -6.34 -40.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264159106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.791 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds