Wall clock time and date at job start Tue Mar 31 2020 12:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47350 * 2 1 4 4 C 1.50694 * 109.47565 * 120.00666 * 2 1 3 5 5 H 1.08000 * 120.00415 * 119.99373 * 4 2 1 6 6 C 1.37881 * 119.99928 * 300.00068 * 4 2 1 7 7 N 1.31515 * 120.00234 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99754 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46975 * 89.99943 * 8 6 4 10 10 H 1.48503 * 109.47038 * 209.99863 * 8 6 4 11 11 H 1.48498 * 109.47341 * 330.00061 * 8 6 4 12 12 N 1.46503 * 109.47081 * 240.00699 * 2 1 3 13 13 C 1.46503 * 119.99852 * 299.99871 * 12 2 1 14 14 C 1.34779 * 120.00039 * 119.99673 * 12 2 1 15 15 O 1.21587 * 119.99932 * 356.54333 * 14 12 2 16 16 C 1.47543 * 119.99672 * 176.27051 * 14 12 2 17 17 C 1.39888 * 120.23378 * 333.49374 * 16 14 12 18 18 C 1.37781 * 120.09119 * 179.76123 * 17 16 14 19 19 C 1.38577 * 120.41524 * 0.50272 * 18 17 16 20 20 C 1.38398 * 120.16278 * 359.74660 * 19 18 17 21 21 C 1.39416 * 120.06661 * 0.02562 * 20 19 18 22 22 O 1.35680 * 119.55171 * 179.87608 * 21 20 19 23 23 C 1.43005 * 116.73936 * 327.22080 * 22 21 20 24 24 H 1.08993 * 109.42739 * 166.42345 * 23 22 21 25 25 C 1.53008 * 109.44486 * 286.35014 * 23 22 21 26 26 C 1.50758 * 109.62160 * 46.38769 * 23 22 21 27 27 O 1.21297 * 120.13509 * 148.71993 * 26 23 22 28 28 N 1.35088 * 119.72736 * 328.70992 * 26 23 22 29 29 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46733 * 299.99404 * 1 2 3 31 31 H 1.09002 * 109.47398 * 59.99444 * 1 2 3 32 32 H 0.96993 * 119.99908 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47053 * 276.06324 * 13 12 2 34 34 H 1.09001 * 109.46750 * 36.06190 * 13 12 2 35 35 H 1.09005 * 109.46970 * 156.05920 * 13 12 2 36 36 H 1.07994 * 119.95583 * 0.02562 * 17 16 14 37 37 H 1.07997 * 119.78840 * 180.21936 * 18 17 16 38 38 H 1.08009 * 119.91947 * 179.77360 * 19 18 17 39 39 H 1.08991 * 109.47131 * 180.15022 * 25 23 22 40 40 H 1.09004 * 109.46971 * 300.15577 * 25 23 22 41 41 H 1.09000 * 109.46703 * 60.14998 * 25 23 22 42 42 H 0.96994 * 120.52538 * 181.68139 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2396 2.4827 7 7 2.1374 -0.8599 3.5564 8 14 0.6259 1.2796 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9950 3.9072 11 1 0.8491 2.1772 1.4925 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0351 1.1454 -1.9237 16 6 3.3526 -0.7526 -3.2451 17 6 3.5762 -2.1320 -3.1804 18 6 4.0942 -2.7996 -4.2687 19 6 4.4072 -2.1115 -5.4300 20 6 4.1965 -0.7458 -5.5074 21 6 3.6686 -0.0576 -4.4160 22 8 3.4686 1.2816 -4.5024 23 6 4.3906 2.0191 -5.3093 24 1 3.9933 3.0172 -5.4935 25 6 5.7304 2.1310 -4.5788 26 6 4.5935 1.3091 -6.6236 27 8 4.8325 1.9449 -7.6286 28 7 4.5083 -0.0380 -6.6774 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.9034 -0.5284 4.4374 33 1 2.3541 -2.7369 -0.8824 34 1 0.6471 -2.2732 -1.0808 35 1 1.7286 -2.3125 -2.4940 36 1 3.3385 -2.6750 -2.2777 37 1 4.2615 -3.8652 -4.2146 38 1 4.8163 -2.6423 -6.2771 39 1 6.4326 2.6954 -5.1922 40 1 5.5842 2.6442 -3.6283 41 1 6.1286 1.1331 -4.3954 42 1 4.6608 -0.5083 -7.5119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264159106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:35 Heat of formation + Delta-G solvation = -67.639794 kcal Electronic energy + Delta-G solvation = -27467.844413 eV Core-core repulsion = 23606.732606 eV Total energy + Delta-G solvation = -3861.111807 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.79093 -41.07390 -39.65659 -38.68808 -37.22212 -36.31794 -34.75177 -33.04606 -32.79301 -31.03485 -30.15307 -27.88378 -27.15360 -26.02269 -25.42237 -24.42319 -22.91354 -20.81889 -20.64892 -19.72110 -19.10267 -18.61395 -17.95438 -17.57083 -17.22848 -16.83608 -16.50076 -16.47659 -16.26618 -15.84045 -15.52712 -15.43711 -14.93630 -14.65350 -14.26428 -14.14783 -14.07571 -13.87391 -13.63089 -13.49547 -13.23456 -13.16641 -13.02173 -13.01600 -12.72092 -12.29528 -12.13229 -12.01832 -11.74127 -11.56087 -11.32430 -11.19193 -10.78083 -10.66360 -9.77578 -9.36307 -9.03466 -8.33494 -6.37209 -0.23004 -0.00846 1.08599 1.26831 1.36883 1.45307 1.59920 1.92645 2.17534 2.21875 2.28994 2.72076 2.81192 3.02019 3.42065 3.66820 3.77657 3.82734 3.97554 4.20657 4.23126 4.39421 4.42907 4.48299 4.53136 4.57128 4.60464 4.63830 4.75452 4.88983 4.94165 4.97164 5.08109 5.10590 5.30830 5.35624 5.40747 5.50405 5.61943 5.65123 5.73156 6.17419 6.23995 6.63259 6.64121 6.72413 7.23037 7.37907 8.82117 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020413 B = 0.003905 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.375289 B = 7169.305481 C = 7953.180272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.233 3.767 3 H 0.029 0.971 4 C -0.523 4.523 5 H 0.052 0.948 6 C 0.027 3.973 7 N -0.936 5.936 8 Si 0.935 3.065 9 H -0.254 1.254 10 H -0.296 1.296 11 H -0.266 1.266 12 N -0.589 5.589 13 C 0.068 3.932 14 C 0.542 3.458 15 O -0.580 6.580 16 C -0.144 4.144 17 C -0.090 4.090 18 C -0.104 4.104 19 C -0.079 4.079 20 C 0.070 3.930 21 C 0.112 3.888 22 O -0.303 6.303 23 C 0.070 3.930 24 H 0.158 0.842 25 C -0.167 4.167 26 C 0.501 3.499 27 O -0.540 6.540 28 N -0.643 5.643 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.268 0.732 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.163 0.837 37 H 0.182 0.818 38 H 0.179 0.821 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.646 -6.352 -21.178 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.130 3.870 3 H 0.047 0.953 4 C -0.561 4.561 5 H 0.070 0.930 6 C -0.172 4.172 7 N -0.576 5.576 8 Si 0.763 3.237 9 H -0.179 1.179 10 H -0.223 1.223 11 H -0.191 1.191 12 N -0.319 5.319 13 C -0.073 4.073 14 C 0.331 3.669 15 O -0.461 6.461 16 C -0.148 4.148 17 C -0.109 4.109 18 C -0.123 4.123 19 C -0.099 4.099 20 C -0.025 4.025 21 C 0.064 3.936 22 O -0.217 6.217 23 C 0.011 3.989 24 H 0.175 0.825 25 C -0.224 4.224 26 C 0.289 3.711 27 O -0.417 6.417 28 N -0.291 5.291 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.180 0.820 37 H 0.199 0.801 38 H 0.197 0.803 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 3.708 -5.155 -21.234 22.164 hybrid contribution -0.258 0.810 0.486 0.979 sum 3.450 -4.344 -20.749 21.478 Atomic orbital electron populations 1.22317 0.96763 1.02416 0.99733 1.18961 0.91757 0.93412 0.82899 0.95301 1.21329 1.31699 1.13211 0.89866 0.93015 1.25554 0.97055 0.99170 0.95407 1.69980 1.47076 1.42011 0.98539 0.86064 0.80099 0.80553 0.76976 1.17912 1.22342 1.19090 1.47779 1.49062 1.13534 1.21510 1.22463 1.01941 0.80360 1.02536 1.18619 0.78890 0.86383 0.82973 1.90710 1.61376 1.17351 1.76686 1.19397 1.08436 0.95554 0.91418 1.22202 0.96103 0.90783 1.01786 1.21388 0.97710 1.02336 0.90817 1.21286 0.98303 0.89660 1.00699 1.17984 1.04835 0.93678 0.86020 1.18720 0.99018 0.83235 0.92676 1.86416 1.50717 1.16668 1.67880 1.23088 0.93080 0.96647 0.86038 0.82482 1.22248 0.94452 1.03749 1.01962 1.21476 0.75359 0.82869 0.91428 1.90778 1.48260 1.65819 1.36841 1.43490 1.67972 1.06173 1.11438 0.90698 0.93958 0.93004 0.92272 0.91732 0.90812 0.87590 0.81952 0.80096 0.80337 0.88229 0.90332 0.92132 0.72802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.44 8.64 71.98 0.62 -5.82 16 2 C 0.23 11.26 2.23 44.24 0.10 11.35 16 3 H 0.03 1.60 5.96 -2.39 -0.01 1.59 16 4 C -0.52 -28.86 8.95 25.60 0.23 -28.63 16 5 H 0.05 3.06 7.72 -2.91 -0.02 3.04 16 6 C 0.03 1.55 5.45 84.66 0.46 2.01 16 7 N -0.94 -56.59 13.96 21.45 0.30 -56.29 16 8 Si 0.94 45.05 24.37 68.60 1.67 46.73 16 9 H -0.25 -11.20 6.87 99.48 0.68 -10.52 16 10 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 11 H -0.27 -12.86 6.53 99.48 0.65 -12.21 16 12 N -0.59 -23.90 2.75 -830.54 -2.29 -26.19 16 13 C 0.07 2.00 8.01 127.77 1.02 3.03 16 14 C 0.54 22.43 7.41 86.70 0.64 23.07 16 15 O -0.58 -28.92 14.99 14.77 0.22 -28.70 16 16 C -0.14 -4.40 5.47 -20.05 -0.11 -4.51 16 17 C -0.09 -1.89 7.50 22.56 0.17 -1.72 16 18 C -0.10 -1.30 10.02 22.24 0.22 -1.07 16 19 C -0.08 -0.95 9.94 22.39 0.22 -0.73 16 20 C 0.07 1.38 6.54 38.11 0.25 1.63 16 21 C 0.11 3.19 5.83 22.93 0.13 3.32 16 22 O -0.30 -9.85 8.63 -71.22 -0.61 -10.47 16 23 C 0.07 1.79 3.81 29.87 0.11 1.91 16 24 H 0.16 3.59 8.14 -2.39 -0.02 3.57 16 25 C -0.17 -3.85 9.30 71.98 0.67 -3.18 16 26 C 0.50 12.00 7.19 87.63 0.63 12.63 16 27 O -0.54 -15.33 17.95 -3.08 -0.06 -15.39 16 28 N -0.64 -11.70 5.48 -302.73 -1.66 -13.36 16 29 H 0.07 2.81 6.70 -2.39 -0.02 2.79 16 30 H 0.04 1.82 3.27 -2.39 -0.01 1.81 16 31 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.06 1.85 7.00 -2.39 -0.02 1.83 16 34 H 0.07 2.10 6.46 -2.39 -0.02 2.08 16 35 H 0.11 2.32 5.05 -2.38 -0.01 2.31 16 36 H 0.16 3.26 4.58 -2.91 -0.01 3.24 16 37 H 0.18 0.81 8.06 -2.91 -0.02 0.78 16 38 H 0.18 0.63 8.06 -2.91 -0.02 0.61 16 39 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.06 1.42 7.81 -2.39 -0.02 1.40 16 42 H 0.43 5.16 8.89 -92.71 -0.82 4.34 16 Total: -1.00 -80.10 335.35 3.14 -76.96 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.18 Total: 13.41 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 5.38 Total: 13.29 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -3.64 Total: -95.84 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: -0.45 Total: -54.55 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.67 Total: 46.73 kcal Total: -80.10 3.14 -76.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264159106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.324 kcal (2) G-P(sol) polarization free energy of solvation -80.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds