Wall clock time and date at job start Tue Mar 31 2020 12:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46984 * 2 1 4 4 C 1.50696 * 109.47350 * 239.99262 * 2 1 3 5 5 H 1.08003 * 119.99791 * 239.99596 * 4 2 1 6 6 C 1.37877 * 120.00030 * 60.00041 * 4 2 1 7 7 N 1.31517 * 119.99671 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99964 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47209 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46981 * 119.99982 * 8 6 4 11 11 H 1.48502 * 109.46957 * 240.00100 * 8 6 4 12 12 N 1.46500 * 109.47079 * 119.99096 * 2 1 3 13 13 C 1.46504 * 120.00220 * 60.00263 * 12 2 1 14 14 C 1.34782 * 120.00225 * 240.00288 * 12 2 1 15 15 O 1.21588 * 120.00058 * 4.46320 * 14 12 2 16 16 C 1.47541 * 120.00025 * 184.45992 * 14 12 2 17 17 C 1.39880 * 120.24030 * 310.88667 * 16 14 12 18 18 C 1.37771 * 120.09782 * 179.97438 * 17 16 14 19 19 C 1.38582 * 120.41717 * 0.02562 * 18 17 16 20 20 C 1.38390 * 120.15791 * 359.97058 * 19 18 17 21 21 C 1.39416 * 120.06951 * 0.02562 * 20 19 18 22 22 O 1.35682 * 119.56011 * 179.97438 * 21 20 19 23 23 C 1.42997 * 116.73798 * 327.20241 * 22 21 20 24 24 H 1.09000 * 109.42385 * 166.41517 * 23 22 21 25 25 C 1.52997 * 109.44997 * 286.33953 * 23 22 21 26 26 C 1.50764 * 109.62534 * 46.38622 * 23 22 21 27 27 O 1.21290 * 120.14324 * 148.73001 * 26 23 22 28 28 N 1.35096 * 119.72025 * 328.71043 * 26 23 22 29 29 H 1.08996 * 109.47395 * 300.00693 * 1 2 3 30 30 H 1.08995 * 109.46974 * 60.00868 * 1 2 3 31 31 H 1.08997 * 109.47138 * 180.02562 * 1 2 3 32 32 H 0.96996 * 119.99450 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.46916 * 272.93339 * 13 12 2 34 34 H 1.09002 * 109.46564 * 32.92820 * 13 12 2 35 35 H 1.08990 * 109.47361 * 152.93484 * 13 12 2 36 36 H 1.08008 * 119.94987 * 359.94777 * 17 16 14 37 37 H 1.07997 * 119.79265 * 179.97438 * 18 17 16 38 38 H 1.08000 * 119.91795 * 179.97438 * 19 18 17 39 39 H 1.08995 * 109.47387 * 180.15739 * 25 23 22 40 40 H 1.09005 * 109.46868 * 300.15561 * 25 23 22 41 41 H 1.09000 * 109.47244 * 60.14787 * 25 23 22 42 42 H 0.97003 * 120.51818 * 181.70240 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6534 -1.5886 -1.1310 6 6 1.6993 -0.2396 -2.4827 7 7 0.9428 0.8293 -2.6034 8 14 2.3227 -1.1200 -4.0077 9 1 3.1476 -2.2867 -3.6034 10 1 1.1680 -1.5872 -4.8163 11 1 3.1475 -0.1863 -4.8159 12 7 2.0183 -0.6904 1.1963 13 6 1.6645 -2.0930 1.4284 14 6 2.7932 -0.0353 2.0834 15 8 3.0202 1.1498 1.9337 16 6 3.3659 -0.7562 3.2364 17 6 2.5515 -1.5631 4.0379 18 6 3.0895 -2.2353 5.1134 19 6 4.4380 -2.1184 5.4107 20 6 5.2564 -1.3239 4.6271 21 6 4.7262 -0.6377 3.5354 22 8 5.5379 0.1387 2.7744 23 6 6.6196 0.7901 3.4456 24 1 7.3240 1.1756 2.7085 25 6 6.0753 1.9482 4.2842 26 6 7.3231 -0.1939 4.3455 27 8 8.5123 -0.0836 4.5568 28 7 6.6232 -1.1988 4.9159 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.7088 1.1608 -3.4845 33 1 0.7111 -2.1450 1.9542 34 1 1.5806 -2.6095 0.4721 35 1 2.4383 -2.5680 2.0313 36 1 1.4994 -1.6589 3.8134 37 1 2.4562 -2.8567 5.7292 38 1 4.8511 -2.6486 6.2561 39 1 6.8997 2.4467 4.7938 40 1 5.5665 2.6600 3.6340 41 1 5.3715 1.5631 5.0222 42 1 7.0590 -1.8238 5.5163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264159112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:43 Heat of formation + Delta-G solvation = -66.046470 kcal Electronic energy + Delta-G solvation = -27454.482706 eV Core-core repulsion = 23593.439990 eV Total energy + Delta-G solvation = -3861.042715 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.75740 -39.60266 -38.36742 -37.63827 -35.33119 -35.21084 -32.86678 -32.06649 -30.84958 -29.30501 -28.93620 -26.20109 -25.22537 -25.01048 -24.14238 -23.49676 -21.28382 -19.69613 -19.36488 -18.62989 -17.61543 -16.80900 -16.39859 -16.31858 -15.90473 -15.52768 -15.47462 -15.07795 -14.79890 -14.55519 -14.34783 -13.99570 -13.30714 -13.07184 -12.97700 -12.76449 -12.51157 -12.39193 -12.26816 -11.99170 -11.80531 -11.68703 -11.38960 -11.25840 -11.05636 -10.87947 -10.79642 -10.68685 -10.23757 -10.16306 -10.15674 -9.20065 -9.06787 -8.71026 -8.41847 -8.11632 -7.59010 -6.06719 -4.14288 0.81121 0.97275 2.08038 2.52418 3.10534 3.26869 3.28780 3.35263 3.38225 3.54438 3.83068 3.99336 4.38509 4.48007 4.65102 4.74194 4.80903 4.99486 5.03813 5.13832 5.24896 5.43717 5.47668 5.51905 5.72538 5.78270 5.93744 5.96777 6.00127 6.20589 6.24342 6.38737 6.45834 6.57565 6.75866 6.83581 7.06293 7.18552 7.41654 7.53398 7.55078 7.72225 8.02453 8.19694 8.50205 8.82890 9.02435 9.52099 10.98687 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.004082 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.775895 B = 6857.951455 C = 7564.499816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.584 5.584 13 C 0.078 3.922 14 C 0.552 3.448 15 O -0.533 6.533 16 C -0.104 4.104 17 C -0.081 4.081 18 C -0.119 4.119 19 C -0.112 4.112 20 C 0.080 3.920 21 C 0.127 3.873 22 O -0.277 6.277 23 C 0.078 3.922 24 H 0.152 0.848 25 C -0.174 4.174 26 C 0.498 3.502 27 O -0.514 6.514 28 N -0.658 5.658 29 H 0.011 0.989 30 H 0.094 0.906 31 H 0.030 0.970 32 H 0.263 0.737 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.600 -6.461 17.174 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.314 5.314 13 C -0.066 4.066 14 C 0.337 3.663 15 O -0.411 6.411 16 C -0.109 4.109 17 C -0.100 4.100 18 C -0.138 4.138 19 C -0.133 4.133 20 C -0.015 4.015 21 C 0.079 3.921 22 O -0.190 6.190 23 C 0.019 3.981 24 H 0.169 0.831 25 C -0.231 4.231 26 C 0.285 3.715 27 O -0.389 6.389 28 N -0.305 5.305 29 H 0.031 0.969 30 H 0.112 0.888 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 5.257 -5.451 16.690 18.328 hybrid contribution 0.566 -1.010 -0.381 1.218 sum 5.823 -6.460 16.309 18.483 Atomic orbital electron populations 1.22077 0.98057 0.99422 1.00869 1.18976 0.90945 0.94541 0.79636 0.91783 1.21350 1.31703 1.13038 0.90228 0.92155 1.24879 0.94932 0.94978 0.98931 1.69890 1.36402 1.22623 1.23635 0.86448 0.78591 0.79628 0.82783 1.19814 1.20953 1.20904 1.48164 1.48423 1.11635 1.23215 1.21796 0.98739 0.83461 1.02572 1.17841 0.79577 0.86832 0.82015 1.90750 1.60333 1.14914 1.75122 1.19721 0.90244 1.01280 0.99604 1.21345 1.00311 0.94412 0.93943 1.20851 0.94238 1.00812 0.97888 1.20668 0.93595 0.99755 0.99235 1.17897 0.83885 1.02155 0.97561 1.18451 0.89727 0.93361 0.90595 1.86438 1.38971 1.60129 1.33499 1.22928 0.88232 0.91269 0.95661 0.83085 1.22320 1.02245 0.97827 1.00753 1.21619 0.87515 0.81956 0.80427 1.90784 1.14265 1.72739 1.61111 1.43680 1.07861 1.30866 1.48065 0.96948 0.88793 0.95128 0.92749 0.93639 0.90181 0.92305 0.84069 0.84600 0.84891 0.90250 0.88743 0.91709 0.74648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.97 37.16 0.33 -3.09 16 2 C 0.26 6.55 2.63 -69.08 -0.18 6.37 16 3 H 0.06 1.89 6.91 -51.93 -0.36 1.53 16 4 C -0.52 -14.08 8.01 -34.44 -0.28 -14.36 16 5 H 0.06 1.61 7.29 -52.48 -0.38 1.23 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.90 11.32 55.43 0.63 -24.27 16 8 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.58 -12.36 2.75 -176.49 -0.49 -12.85 16 13 C 0.08 1.28 8.11 59.85 0.49 1.77 16 14 C 0.55 11.60 6.96 -12.46 -0.09 11.51 16 15 O -0.53 -13.18 15.90 -2.91 -0.05 -13.23 16 16 C -0.10 -1.68 4.90 -104.91 -0.51 -2.20 16 17 C -0.08 -0.97 7.61 -39.14 -0.30 -1.27 16 18 C -0.12 -1.07 10.02 -39.63 -0.40 -1.47 16 19 C -0.11 -1.01 9.94 -39.40 -0.39 -1.40 16 20 C 0.08 0.96 6.54 -83.51 -0.55 0.41 16 21 C 0.13 1.96 5.83 -38.57 -0.22 1.74 16 22 O -0.28 -4.72 9.27 -26.95 -0.25 -4.97 16 23 C 0.08 1.05 3.81 -27.85 -0.11 0.95 16 24 H 0.15 1.81 8.14 -51.93 -0.42 1.39 16 25 C -0.17 -2.05 9.30 37.16 0.35 -1.71 16 26 C 0.50 6.59 7.19 -10.81 -0.08 6.51 16 27 O -0.51 -7.91 17.95 5.55 0.10 -7.81 16 28 N -0.66 -7.28 5.48 -9.67 -0.05 -7.33 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 31 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.05 0.63 7.56 -51.93 -0.39 0.24 16 34 H 0.08 1.41 6.98 -51.93 -0.36 1.05 16 35 H 0.06 0.83 5.68 -51.93 -0.30 0.53 16 36 H 0.14 1.52 6.57 -52.48 -0.34 1.17 16 37 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.06 0.78 7.81 -51.93 -0.41 0.37 16 42 H 0.41 3.47 8.89 -40.82 -0.36 3.11 16 LS Contribution 347.07 15.07 5.23 5.23 Total: -1.00 -33.57 347.07 -7.22 -40.79 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.29 Total: 3.01 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -2.03 Total: 5.44 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.09 Total: -44.45 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.20 Total: -26.00 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.57 -7.22 -40.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264159112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.254 kcal (2) G-P(sol) polarization free energy of solvation -33.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds