Wall clock time and date at job start Tue Mar 31 2020 12:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46984 * 2 1 4 4 C 1.50696 * 109.47350 * 239.99262 * 2 1 3 5 5 H 1.08003 * 119.99791 * 239.99596 * 4 2 1 6 6 C 1.37877 * 120.00030 * 60.00041 * 4 2 1 7 7 N 1.31517 * 119.99671 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99964 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47209 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46981 * 119.99982 * 8 6 4 11 11 H 1.48502 * 109.46957 * 240.00100 * 8 6 4 12 12 N 1.46500 * 109.47079 * 119.99096 * 2 1 3 13 13 C 1.46504 * 120.00220 * 60.00263 * 12 2 1 14 14 C 1.34782 * 120.00225 * 240.00288 * 12 2 1 15 15 O 1.21588 * 120.00058 * 4.46320 * 14 12 2 16 16 C 1.47541 * 120.00025 * 184.45992 * 14 12 2 17 17 C 1.39880 * 120.24030 * 310.88667 * 16 14 12 18 18 C 1.37771 * 120.09782 * 179.97438 * 17 16 14 19 19 C 1.38582 * 120.41717 * 0.02562 * 18 17 16 20 20 C 1.38390 * 120.15791 * 359.97058 * 19 18 17 21 21 C 1.39416 * 120.06951 * 0.02562 * 20 19 18 22 22 O 1.35682 * 119.56011 * 179.97438 * 21 20 19 23 23 C 1.42997 * 116.73798 * 327.20241 * 22 21 20 24 24 H 1.09000 * 109.42385 * 166.41517 * 23 22 21 25 25 C 1.52997 * 109.44997 * 286.33953 * 23 22 21 26 26 C 1.50764 * 109.62534 * 46.38622 * 23 22 21 27 27 O 1.21290 * 120.14324 * 148.73001 * 26 23 22 28 28 N 1.35096 * 119.72025 * 328.71043 * 26 23 22 29 29 H 1.08996 * 109.47395 * 300.00693 * 1 2 3 30 30 H 1.08995 * 109.46974 * 60.00868 * 1 2 3 31 31 H 1.08997 * 109.47138 * 180.02562 * 1 2 3 32 32 H 0.96996 * 119.99450 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.46916 * 272.93339 * 13 12 2 34 34 H 1.09002 * 109.46564 * 32.92820 * 13 12 2 35 35 H 1.08990 * 109.47361 * 152.93484 * 13 12 2 36 36 H 1.08008 * 119.94987 * 359.94777 * 17 16 14 37 37 H 1.07997 * 119.79265 * 179.97438 * 18 17 16 38 38 H 1.08000 * 119.91795 * 179.97438 * 19 18 17 39 39 H 1.08995 * 109.47387 * 180.15739 * 25 23 22 40 40 H 1.09005 * 109.46868 * 300.15561 * 25 23 22 41 41 H 1.09000 * 109.47244 * 60.14787 * 25 23 22 42 42 H 0.97003 * 120.51818 * 181.70240 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6534 -1.5886 -1.1310 6 6 1.6993 -0.2396 -2.4827 7 7 0.9428 0.8293 -2.6034 8 14 2.3227 -1.1200 -4.0077 9 1 3.1476 -2.2867 -3.6034 10 1 1.1680 -1.5872 -4.8163 11 1 3.1475 -0.1863 -4.8159 12 7 2.0183 -0.6904 1.1963 13 6 1.6645 -2.0930 1.4284 14 6 2.7932 -0.0353 2.0834 15 8 3.0202 1.1498 1.9337 16 6 3.3659 -0.7562 3.2364 17 6 2.5515 -1.5631 4.0379 18 6 3.0895 -2.2353 5.1134 19 6 4.4380 -2.1184 5.4107 20 6 5.2564 -1.3239 4.6271 21 6 4.7262 -0.6377 3.5354 22 8 5.5379 0.1387 2.7744 23 6 6.6196 0.7901 3.4456 24 1 7.3240 1.1756 2.7085 25 6 6.0753 1.9482 4.2842 26 6 7.3231 -0.1939 4.3455 27 8 8.5123 -0.0836 4.5568 28 7 6.6232 -1.1988 4.9159 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.7088 1.1608 -3.4845 33 1 0.7111 -2.1450 1.9542 34 1 1.5806 -2.6095 0.4721 35 1 2.4383 -2.5680 2.0313 36 1 1.4994 -1.6589 3.8134 37 1 2.4562 -2.8567 5.7292 38 1 4.8511 -2.6486 6.2561 39 1 6.8997 2.4467 4.7938 40 1 5.5665 2.6600 3.6340 41 1 5.3715 1.5631 5.0222 42 1 7.0590 -1.8238 5.5163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264159112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:43 Heat of formation + Delta-G solvation = -89.727973 kcal Electronic energy + Delta-G solvation = -27455.509613 eV Core-core repulsion = 23593.439990 eV Total energy + Delta-G solvation = -3862.069622 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.78260 -40.94682 -39.64645 -38.67290 -37.09147 -36.26900 -34.75156 -33.06880 -32.19913 -30.69027 -30.10809 -27.64195 -27.29432 -26.02828 -25.35245 -24.47854 -22.85407 -20.76748 -20.63034 -19.78303 -18.90720 -18.41300 -17.82521 -17.61734 -17.12489 -17.01658 -16.49708 -16.35601 -16.02521 -15.98684 -15.51978 -15.33677 -14.79041 -14.31187 -14.25483 -14.00676 -13.90338 -13.55760 -13.53534 -13.24195 -13.10349 -13.02766 -12.94265 -12.74135 -12.66614 -12.47077 -12.25854 -12.18766 -12.10624 -11.81500 -11.21465 -11.17309 -10.71615 -10.49470 -9.72604 -9.30502 -9.05551 -8.14243 -6.30238 -0.13713 0.00926 1.08715 1.40088 1.42255 1.52952 1.57309 1.86705 2.16504 2.29602 2.45808 2.71387 2.81089 3.13881 3.45053 3.65419 3.76524 3.84598 4.00468 4.23637 4.25899 4.46371 4.47921 4.53107 4.58705 4.75171 4.80013 4.90864 4.93872 4.96760 5.04928 5.08940 5.10273 5.35548 5.38345 5.49992 5.61872 5.63744 5.65593 5.68437 6.06220 6.17750 6.18185 6.62782 6.77229 6.81393 7.30998 7.47269 8.90350 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.004082 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.775895 B = 6857.951455 C = 7564.499816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.263 3.737 3 H 0.007 0.993 4 C -0.537 4.537 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.963 3.037 9 H -0.267 1.267 10 H -0.271 1.271 11 H -0.286 1.286 12 N -0.592 5.592 13 C 0.077 3.923 14 C 0.544 3.456 15 O -0.590 6.590 16 C -0.135 4.135 17 C -0.077 4.077 18 C -0.098 4.098 19 C -0.085 4.085 20 C 0.074 3.926 21 C 0.100 3.900 22 O -0.316 6.316 23 C 0.069 3.931 24 H 0.154 0.846 25 C -0.164 4.164 26 C 0.503 3.497 27 O -0.540 6.540 28 N -0.642 5.642 29 H 0.022 0.978 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.264 0.736 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.154 0.846 37 H 0.185 0.815 38 H 0.180 0.820 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.413 -9.943 19.874 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.161 3.839 3 H 0.025 0.975 4 C -0.575 4.575 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.788 3.212 9 H -0.192 1.192 10 H -0.197 1.197 11 H -0.212 1.212 12 N -0.322 5.322 13 C -0.065 4.065 14 C 0.332 3.668 15 O -0.471 6.471 16 C -0.140 4.140 17 C -0.096 4.096 18 C -0.116 4.116 19 C -0.105 4.105 20 C -0.021 4.021 21 C 0.052 3.948 22 O -0.230 6.230 23 C 0.010 3.990 24 H 0.171 0.829 25 C -0.222 4.222 26 C 0.290 3.710 27 O -0.417 6.417 28 N -0.290 5.290 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.172 0.828 37 H 0.202 0.798 38 H 0.197 0.803 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 5.044 -9.001 19.429 21.999 hybrid contribution 0.604 0.055 -1.134 1.286 sum 5.648 -8.946 18.295 21.134 Atomic orbital electron populations 1.21845 0.96684 1.00293 1.00028 1.18553 0.91924 0.92079 0.81350 0.97478 1.21578 1.31767 1.13000 0.91202 0.92410 1.25696 0.95074 0.95640 1.01877 1.70028 1.37291 1.23827 1.24336 0.85436 0.78272 0.78451 0.79022 1.19155 1.19672 1.21250 1.48140 1.48616 1.13396 1.22032 1.22035 1.01236 0.80547 1.02718 1.18662 0.78580 0.86507 0.83040 1.90698 1.61977 1.17597 1.76875 1.19420 0.91244 1.03963 0.99340 1.21575 1.00462 0.93524 0.94037 1.21366 0.94588 0.99278 0.96363 1.21262 0.93223 0.97209 0.98818 1.17990 0.84351 1.02602 0.97132 1.18728 0.89614 0.94379 0.92066 1.86375 1.40039 1.61097 1.35495 1.23088 0.87867 0.91854 0.96165 0.82859 1.22231 1.02705 0.97066 1.00182 1.21416 0.87071 0.82299 0.80228 1.90773 1.15104 1.73593 1.62183 1.43484 1.07613 1.30347 1.47601 0.95917 0.91438 0.93166 0.92630 0.90447 0.91577 0.89654 0.82817 0.79781 0.80274 0.88101 0.90466 0.91841 0.72750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 8.97 71.98 0.65 -5.61 16 2 C 0.26 13.94 2.63 44.24 0.12 14.06 16 3 H 0.01 0.46 6.91 -2.39 -0.02 0.45 16 4 C -0.54 -29.75 8.01 25.60 0.21 -29.55 16 5 H 0.06 3.15 7.29 -2.91 -0.02 3.13 16 6 C 0.02 0.93 5.30 84.65 0.45 1.38 16 7 N -0.92 -53.24 11.32 21.45 0.24 -52.99 16 8 Si 0.96 43.72 29.54 68.60 2.03 45.74 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 N -0.59 -25.72 2.75 -830.55 -2.29 -28.01 16 13 C 0.08 2.41 8.11 127.77 1.04 3.44 16 14 C 0.54 23.87 6.96 86.70 0.60 24.48 16 15 O -0.59 -31.57 15.90 3.85 0.06 -31.51 16 16 C -0.14 -4.32 4.90 -20.05 -0.10 -4.42 16 17 C -0.08 -1.58 7.61 22.56 0.17 -1.41 16 18 C -0.10 -1.17 10.02 22.24 0.22 -0.94 16 19 C -0.08 -1.05 9.94 22.39 0.22 -0.83 16 20 C 0.07 1.57 6.54 38.11 0.25 1.82 16 21 C 0.10 3.06 5.83 22.93 0.13 3.19 16 22 O -0.32 -11.32 9.27 -82.16 -0.76 -12.09 16 23 C 0.07 1.94 3.81 29.87 0.11 2.05 16 24 H 0.15 3.99 8.14 -2.39 -0.02 3.97 16 25 C -0.16 -4.04 9.30 71.98 0.67 -3.37 16 26 C 0.50 13.01 7.19 87.63 0.63 13.64 16 27 O -0.54 -16.30 17.95 -3.06 -0.05 -16.35 16 28 N -0.64 -12.68 5.48 -302.72 -1.66 -14.34 16 29 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16 31 H 0.05 2.16 7.67 -2.39 -0.02 2.14 16 32 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 33 H 0.08 1.92 7.56 -2.39 -0.02 1.90 16 34 H 0.07 2.26 6.98 -2.39 -0.02 2.24 16 35 H 0.09 2.21 5.68 -2.39 -0.01 2.20 16 36 H 0.15 2.71 6.57 -2.91 -0.02 2.69 16 37 H 0.18 0.60 8.06 -2.91 -0.02 0.57 16 38 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 39 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.06 1.55 7.81 -2.39 -0.02 1.53 16 42 H 0.43 5.71 8.89 -92.71 -0.82 4.88 16 Total: -1.00 -80.51 347.07 3.19 -77.32 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.25 Total: 14.29 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 5.37 Total: 17.93 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -3.70 Total: -95.34 kcal Atomic # 8 Polarization: -59.19 SS G_CDS: -0.75 Total: -59.95 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -80.51 3.19 -77.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264159112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.406 kcal (2) G-P(sol) polarization free energy of solvation -80.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds