Wall clock time and date at job start Tue Mar 31 2020 12:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50707 * 119.99803 * 2 1 4 4 C 1.53000 * 109.46715 * 125.00383 * 3 2 1 5 5 H 1.08998 * 109.47393 * 55.00062 * 4 3 2 6 6 C 1.53003 * 109.46907 * 175.00245 * 4 3 2 7 7 N 1.46499 * 109.47476 * 295.00033 * 4 3 2 8 8 C 1.34773 * 120.00379 * 155.00344 * 7 4 3 9 9 O 1.21363 * 119.99753 * 359.97438 * 8 7 4 10 10 C 1.49351 * 120.00102 * 180.02562 * 8 7 4 11 11 O 1.21373 * 120.00166 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99746 * 180.02562 * 10 8 7 13 13 C 1.39727 * 119.99804 * 175.49344 * 12 10 8 14 14 C 1.39024 * 120.04206 * 214.85635 * 13 12 10 15 15 C 1.38142 * 120.06251 * 179.74546 * 14 13 12 16 16 C 1.38180 * 120.14402 * 0.55306 * 15 14 13 17 17 C 1.38921 * 120.07931 * 359.70139 * 16 15 14 18 18 O 1.35755 * 120.02790 * 179.97438 * 17 16 15 19 19 C 1.34828 * 117.00295 * 5.36856 * 18 17 16 20 20 H 1.08009 * 119.99541 * 354.96687 * 19 18 17 21 21 C 1.38653 * 120.00621 * 174.96085 * 19 18 17 22 22 N 1.31562 * 119.99425 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00364 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47082 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47298 * 120.00305 * 23 21 19 26 26 H 1.48501 * 109.47054 * 240.00145 * 23 21 19 27 27 C 1.38756 * 119.94216 * 0.02562 * 17 16 15 28 28 H 1.07999 * 119.99978 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.99573 * 179.72306 * 1 2 3 30 30 H 1.08004 * 120.00431 * 180.02562 * 2 1 3 31 31 H 1.08992 * 109.47138 * 245.00027 * 3 2 1 32 32 H 1.08996 * 109.47193 * 5.00876 * 3 2 1 33 33 H 1.08998 * 109.47243 * 59.99726 * 6 4 3 34 34 H 1.09002 * 109.46768 * 180.02562 * 6 4 3 35 35 H 1.09003 * 109.47172 * 299.99725 * 6 4 3 36 36 H 0.97002 * 119.99763 * 335.00574 * 7 4 3 37 37 H 0.96997 * 120.00112 * 355.48753 * 12 10 8 38 38 H 1.08004 * 119.96745 * 359.97438 * 14 13 12 39 39 H 1.07996 * 119.92536 * 180.27561 * 15 14 13 40 40 H 1.07997 * 119.95810 * 179.72251 * 16 15 14 41 41 H 0.96994 * 120.00000 * 179.97438 * 22 21 19 42 42 H 1.08006 * 120.07441 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3331 1.1816 5 1 3.6827 0.4573 1.1403 6 6 3.8875 2.6017 1.1111 7 7 2.2787 1.3222 2.4362 8 6 2.8475 0.8474 3.5620 9 8 3.9862 0.4283 3.5363 10 6 2.0762 0.8358 4.8408 11 8 0.9372 1.2544 4.8664 12 7 2.6452 0.3614 5.9667 13 6 1.9591 0.4369 7.1816 14 6 2.6577 0.6596 8.3627 15 6 1.9793 0.7396 9.5634 16 6 0.6063 0.5871 9.5961 17 6 -0.0971 0.3591 8.4201 18 8 -1.4460 0.2089 8.4535 19 6 -2.0542 0.4024 9.6411 20 1 -1.4636 0.5841 10.5270 21 6 -3.4378 0.3683 9.7253 22 7 -4.1570 0.1466 8.6462 23 14 -4.2804 0.6371 11.3706 24 1 -3.2551 0.8638 12.4206 25 1 -5.1706 1.8224 11.2830 26 1 -5.0854 -0.5620 11.7161 27 6 0.5802 0.2838 7.2114 28 1 -0.5400 0.9353 0.0004 29 1 -0.5399 -0.9353 -0.0045 30 1 1.8501 -0.9353 -0.0004 31 1 2.6212 1.4027 -0.9313 32 1 1.3586 2.1317 0.0897 33 1 3.2398 3.4774 1.1524 34 1 4.5800 2.6213 1.9526 35 1 4.4503 2.6098 0.1776 36 1 1.3684 1.6567 2.4566 37 1 3.5310 -0.0325 5.9336 38 1 3.7315 0.7740 8.3411 39 1 2.5237 0.9171 10.4791 40 1 0.0794 0.6457 10.5370 41 1 -5.1249 0.1223 8.7050 42 1 0.0354 0.1069 6.2958 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265307047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:23 Heat of formation + Delta-G solvation = -48.397924 kcal Electronic energy + Delta-G solvation = -25595.020601 eV Core-core repulsion = 21734.743184 eV Total energy + Delta-G solvation = -3860.277417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.91441 -39.44495 -38.43661 -37.03613 -36.59537 -34.37029 -33.69055 -32.26232 -31.26774 -29.64328 -28.63923 -27.00158 -25.54684 -24.97559 -22.44632 -21.59148 -21.07988 -20.49420 -19.98635 -18.70699 -18.09170 -17.10483 -16.96386 -16.06359 -15.88492 -15.44107 -15.10623 -15.01758 -14.61945 -14.26454 -14.16967 -14.03045 -13.75554 -13.57854 -13.46390 -12.90067 -12.83111 -12.64681 -12.55017 -12.09905 -11.84004 -11.65982 -11.57146 -11.33708 -11.18274 -11.10547 -11.05186 -10.77823 -10.44264 -9.85533 -9.70774 -9.61516 -9.42922 -9.19710 -8.83654 -7.78899 -7.22750 -6.43790 -4.02908 1.28059 2.02597 2.09945 2.30741 2.37564 3.12759 3.14421 3.20255 3.25624 3.59344 3.97720 4.32299 4.42255 4.54607 4.57822 4.80396 4.98069 5.07436 5.10471 5.20804 5.28981 5.33721 5.44023 5.59623 5.62685 5.70346 5.79881 5.88633 6.04094 6.08422 6.14117 6.31552 6.37004 6.48302 6.56376 6.69409 6.96494 7.01014 7.06034 7.32010 7.42643 7.48389 7.67747 7.77794 8.00731 8.08751 9.01218 9.71506 10.74071 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015573 B = 0.002855 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.497359 B = 9803.557583 C =11272.811567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.163 4.163 3 C -0.101 4.101 4 C 0.143 3.857 5 H 0.094 0.906 6 C -0.166 4.166 7 N -0.693 5.693 8 C 0.515 3.485 9 O -0.523 6.523 10 C 0.497 3.503 11 O -0.489 6.489 12 N -0.637 5.637 13 C 0.168 3.832 14 C -0.229 4.229 15 C -0.058 4.058 16 C -0.241 4.241 17 C 0.166 3.834 18 O -0.173 6.173 19 C -0.392 4.392 20 H 0.094 0.906 21 C 0.039 3.961 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.185 4.185 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.414 0.586 37 H 0.417 0.583 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.270 0.730 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.895 2.340 -13.967 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.181 4.181 3 C -0.139 4.139 4 C 0.039 3.961 5 H 0.112 0.888 6 C -0.224 4.224 7 N -0.347 5.347 8 C 0.296 3.704 9 O -0.400 6.400 10 C 0.278 3.722 11 O -0.362 6.362 12 N -0.284 5.284 13 C 0.075 3.925 14 C -0.250 4.250 15 C -0.077 4.077 16 C -0.261 4.261 17 C 0.111 3.889 18 O -0.076 6.076 19 C -0.468 4.468 20 H 0.111 0.889 21 C -0.166 4.166 22 N -0.494 5.494 23 Si 0.767 3.233 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.202 1.202 27 C -0.206 4.206 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.250 0.750 37 H 0.254 0.746 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.147 0.853 41 H 0.079 0.921 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 13.475 2.282 -14.270 19.759 hybrid contribution -0.407 0.087 0.872 0.967 sum 13.068 2.369 -13.398 18.865 Atomic orbital electron populations 1.23927 0.95900 1.02259 0.99919 1.22875 0.96122 0.98128 1.00957 1.21095 0.98464 0.96426 0.97914 1.21062 0.93066 0.99907 0.82019 0.88813 1.22209 1.00153 0.97190 1.02857 1.45840 1.18701 1.62357 1.07807 1.20077 0.86695 0.78554 0.85086 1.90745 1.17660 1.45844 1.85703 1.20151 0.87204 0.79782 0.85046 1.90861 1.16660 1.43814 1.84861 1.43000 1.21020 1.58469 1.05868 1.17182 0.90998 1.00770 0.83566 1.20308 0.98775 1.14275 0.91671 1.20518 0.93677 0.97121 0.96361 1.21221 0.94366 1.11667 0.98870 1.19100 0.85329 0.91948 0.92488 1.83988 1.13532 1.75537 1.34525 1.21402 0.89903 1.50748 0.84725 0.88892 1.25310 0.95339 0.96602 0.99300 1.70062 1.06416 1.44977 1.27978 0.85636 0.79354 0.78300 0.80053 1.19065 1.20137 1.20157 1.20155 0.92216 1.10775 0.97457 0.88389 0.88304 0.87305 0.89078 0.90546 0.92059 0.91727 0.91209 0.74951 0.74560 0.87079 0.86823 0.85306 0.92051 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 14.32 29.02 0.42 -1.11 16 2 C -0.16 -1.28 9.25 -36.02 -0.33 -1.62 16 3 C -0.10 -0.66 5.20 -27.88 -0.15 -0.80 16 4 C 0.14 1.18 2.56 -67.93 -0.17 1.01 16 5 H 0.09 0.86 7.58 -51.93 -0.39 0.46 16 6 C -0.17 -1.22 9.48 37.16 0.35 -0.87 16 7 N -0.69 -7.38 4.78 -54.27 -0.26 -7.64 16 8 C 0.52 6.88 7.85 -11.63 -0.09 6.79 16 9 O -0.52 -7.53 16.14 5.49 0.09 -7.44 16 10 C 0.50 7.96 7.73 -11.63 -0.09 7.87 16 11 O -0.49 -9.34 13.91 5.48 0.08 -9.26 16 12 N -0.64 -9.97 5.32 -10.31 -0.05 -10.03 16 13 C 0.17 3.16 6.29 -83.77 -0.53 2.64 16 14 C -0.23 -3.95 9.97 -39.33 -0.39 -4.34 16 15 C -0.06 -1.05 10.03 -39.64 -0.40 -1.44 16 16 C -0.24 -5.25 9.17 -39.35 -0.36 -5.61 16 17 C 0.17 4.13 6.64 -39.14 -0.26 3.87 16 18 O -0.17 -5.04 9.76 0.04 0.00 -5.04 16 19 C -0.39 -11.03 9.49 30.89 0.29 -10.73 16 20 H 0.09 2.41 5.20 -52.48 -0.27 2.13 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.86 -25.48 13.67 55.48 0.76 -24.72 16 23 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 C -0.18 -4.20 8.64 -39.19 -0.34 -4.54 16 28 H 0.10 0.76 7.84 -52.49 -0.41 0.34 16 29 H 0.10 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.11 0.85 8.06 -52.48 -0.42 0.43 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.46 7.79 -51.93 -0.40 0.06 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.41 4.31 8.07 -40.82 -0.33 3.98 16 37 H 0.42 5.38 8.30 -40.82 -0.34 5.05 16 38 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.13 2.77 5.63 -52.49 -0.30 2.48 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.13 3.21 6.23 -52.48 -0.33 2.89 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -33.12 366.31 -6.33 -39.45 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -5.29 Total: 11.53 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -2.14 Total: -7.92 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.44 Total: -42.39 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: 0.17 Total: -21.75 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.12 -6.33 -39.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265307047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.952 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds