Wall clock time and date at job start Tue Mar 31 2020 12:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50707 * 119.99803 * 2 1 4 4 C 1.53000 * 109.46715 * 125.00383 * 3 2 1 5 5 H 1.08998 * 109.47393 * 55.00062 * 4 3 2 6 6 C 1.53003 * 109.46907 * 175.00245 * 4 3 2 7 7 N 1.46499 * 109.47476 * 295.00033 * 4 3 2 8 8 C 1.34773 * 120.00379 * 155.00344 * 7 4 3 9 9 O 1.21363 * 119.99753 * 359.97438 * 8 7 4 10 10 C 1.49351 * 120.00102 * 180.02562 * 8 7 4 11 11 O 1.21373 * 120.00166 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99746 * 180.02562 * 10 8 7 13 13 C 1.39727 * 119.99804 * 175.49344 * 12 10 8 14 14 C 1.39024 * 120.04206 * 214.85635 * 13 12 10 15 15 C 1.38142 * 120.06251 * 179.74546 * 14 13 12 16 16 C 1.38180 * 120.14402 * 0.55306 * 15 14 13 17 17 C 1.38921 * 120.07931 * 359.70139 * 16 15 14 18 18 O 1.35755 * 120.02790 * 179.97438 * 17 16 15 19 19 C 1.34828 * 117.00295 * 5.36856 * 18 17 16 20 20 H 1.08009 * 119.99541 * 354.96687 * 19 18 17 21 21 C 1.38653 * 120.00621 * 174.96085 * 19 18 17 22 22 N 1.31562 * 119.99425 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00364 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47082 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47298 * 120.00305 * 23 21 19 26 26 H 1.48501 * 109.47054 * 240.00145 * 23 21 19 27 27 C 1.38756 * 119.94216 * 0.02562 * 17 16 15 28 28 H 1.07999 * 119.99978 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.99573 * 179.72306 * 1 2 3 30 30 H 1.08004 * 120.00431 * 180.02562 * 2 1 3 31 31 H 1.08992 * 109.47138 * 245.00027 * 3 2 1 32 32 H 1.08996 * 109.47193 * 5.00876 * 3 2 1 33 33 H 1.08998 * 109.47243 * 59.99726 * 6 4 3 34 34 H 1.09002 * 109.46768 * 180.02562 * 6 4 3 35 35 H 1.09003 * 109.47172 * 299.99725 * 6 4 3 36 36 H 0.97002 * 119.99763 * 335.00574 * 7 4 3 37 37 H 0.96997 * 120.00112 * 355.48753 * 12 10 8 38 38 H 1.08004 * 119.96745 * 359.97438 * 14 13 12 39 39 H 1.07996 * 119.92536 * 180.27561 * 15 14 13 40 40 H 1.07997 * 119.95810 * 179.72251 * 16 15 14 41 41 H 0.96994 * 120.00000 * 179.97438 * 22 21 19 42 42 H 1.08006 * 120.07441 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3331 1.1816 5 1 3.6827 0.4573 1.1403 6 6 3.8875 2.6017 1.1111 7 7 2.2787 1.3222 2.4362 8 6 2.8475 0.8474 3.5620 9 8 3.9862 0.4283 3.5363 10 6 2.0762 0.8358 4.8408 11 8 0.9372 1.2544 4.8664 12 7 2.6452 0.3614 5.9667 13 6 1.9591 0.4369 7.1816 14 6 2.6577 0.6596 8.3627 15 6 1.9793 0.7396 9.5634 16 6 0.6063 0.5871 9.5961 17 6 -0.0971 0.3591 8.4201 18 8 -1.4460 0.2089 8.4535 19 6 -2.0542 0.4024 9.6411 20 1 -1.4636 0.5841 10.5270 21 6 -3.4378 0.3683 9.7253 22 7 -4.1570 0.1466 8.6462 23 14 -4.2804 0.6371 11.3706 24 1 -3.2551 0.8638 12.4206 25 1 -5.1706 1.8224 11.2830 26 1 -5.0854 -0.5620 11.7161 27 6 0.5802 0.2838 7.2114 28 1 -0.5400 0.9353 0.0004 29 1 -0.5399 -0.9353 -0.0045 30 1 1.8501 -0.9353 -0.0004 31 1 2.6212 1.4027 -0.9313 32 1 1.3586 2.1317 0.0897 33 1 3.2398 3.4774 1.1524 34 1 4.5800 2.6213 1.9526 35 1 4.4503 2.6098 0.1776 36 1 1.3684 1.6567 2.4566 37 1 3.5310 -0.0325 5.9336 38 1 3.7315 0.7740 8.3411 39 1 2.5237 0.9171 10.4791 40 1 0.0794 0.6457 10.5370 41 1 -5.1249 0.1223 8.7050 42 1 0.0354 0.1069 6.2958 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265307047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:22 Heat of formation + Delta-G solvation = -71.961248 kcal Electronic energy + Delta-G solvation = -25596.042383 eV Core-core repulsion = 21734.743184 eV Total energy + Delta-G solvation = -3861.299199 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.17834 -40.86626 -39.95192 -38.27710 -37.87271 -35.75449 -34.57545 -34.25534 -32.06663 -31.29087 -30.25395 -27.59691 -27.40800 -26.36174 -23.85944 -23.10860 -22.15712 -21.54942 -20.80457 -20.15103 -19.65962 -18.84230 -18.08833 -17.22957 -16.98652 -16.93615 -16.77086 -16.12232 -15.99495 -15.82645 -15.51295 -15.24835 -15.08116 -14.78563 -14.47638 -14.29736 -14.18599 -13.61976 -13.52728 -13.33441 -13.24563 -13.11294 -12.72748 -12.70515 -12.65290 -12.37119 -12.08195 -11.95836 -11.81373 -11.41778 -11.31279 -10.78662 -10.71469 -10.43812 -10.19177 -9.42994 -8.94541 -8.46422 -6.15781 -0.02675 0.60405 0.68983 1.18217 1.36039 1.37521 1.44833 1.55134 2.01590 2.17571 2.49156 2.80892 3.15227 3.23586 3.55180 3.72658 3.92758 4.11122 4.20278 4.33792 4.33901 4.37088 4.43746 4.59118 4.66020 4.69218 4.73641 4.88696 4.95281 5.00586 5.06937 5.10865 5.21228 5.28460 5.32390 5.35654 5.60418 5.70692 5.72792 5.84021 5.85806 6.02838 6.12382 6.24698 6.65162 6.83008 6.97490 7.78502 8.77299 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015573 B = 0.002855 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.497359 B = 9803.557583 C =11272.811567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C -0.095 4.095 4 C 0.141 3.859 5 H 0.089 0.911 6 C -0.161 4.161 7 N -0.682 5.682 8 C 0.524 3.476 9 O -0.532 6.532 10 C 0.495 3.505 11 O -0.525 6.525 12 N -0.627 5.627 13 C 0.174 3.826 14 C -0.199 4.199 15 C -0.047 4.047 16 C -0.249 4.249 17 C 0.128 3.872 18 O -0.232 6.232 19 C -0.413 4.413 20 H 0.108 0.892 21 C -0.026 4.026 22 N -0.922 5.922 23 Si 1.022 2.978 24 H -0.247 1.247 25 H -0.270 1.270 26 H -0.269 1.269 27 C -0.208 4.208 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.415 0.585 37 H 0.434 0.566 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.127 0.873 41 H 0.272 0.728 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.261 3.308 -13.362 22.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.182 4.182 3 C -0.132 4.132 4 C 0.038 3.962 5 H 0.107 0.893 6 C -0.219 4.219 7 N -0.335 5.335 8 C 0.303 3.697 9 O -0.410 6.410 10 C 0.277 3.723 11 O -0.400 6.400 12 N -0.275 5.275 13 C 0.080 3.920 14 C -0.220 4.220 15 C -0.065 4.065 16 C -0.269 4.269 17 C 0.077 3.923 18 O -0.139 6.139 19 C -0.489 4.489 20 H 0.125 0.875 21 C -0.223 4.223 22 N -0.561 5.561 23 Si 0.841 3.159 24 H -0.170 1.170 25 H -0.195 1.195 26 H -0.194 1.194 27 C -0.229 4.229 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.252 0.748 37 H 0.274 0.726 38 H 0.180 0.820 39 H 0.180 0.820 40 H 0.144 0.856 41 H 0.081 0.919 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 16.936 3.248 -13.702 22.025 hybrid contribution -1.103 -0.204 0.516 1.235 sum 15.833 3.044 -13.187 20.829 Atomic orbital electron populations 1.24021 0.96369 1.02368 1.00841 1.23042 0.96052 0.98960 1.00136 1.21106 0.98280 0.95726 0.98073 1.21294 0.93326 1.00389 0.81175 0.89331 1.22180 0.99814 0.96567 1.03379 1.45973 1.18828 1.60768 1.07906 1.19526 0.86272 0.79237 0.84658 1.90746 1.17728 1.46838 1.85647 1.20760 0.86840 0.78667 0.86012 1.90864 1.18391 1.45247 1.85494 1.42942 1.21390 1.58280 1.04900 1.17313 0.89710 0.99325 0.85663 1.20914 1.01105 1.09777 0.90164 1.21042 0.92023 0.94752 0.98704 1.21387 0.96213 1.11738 0.97516 1.19612 0.84513 0.93684 0.94479 1.83956 1.15855 1.78626 1.35435 1.21951 0.90733 1.51021 0.85188 0.87524 1.26679 0.95779 0.96012 1.03822 1.70221 1.06789 1.48015 1.31031 0.84481 0.78208 0.78383 0.74802 1.17002 1.19509 1.19375 1.20166 0.94121 1.12643 0.96009 0.87941 0.88809 0.87379 0.86529 0.89847 0.91549 0.93500 0.88785 0.74806 0.72564 0.82032 0.82003 0.85575 0.91882 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.30 14.32 67.78 0.97 -2.33 16 2 C -0.16 -2.43 9.25 25.65 0.24 -2.19 16 3 C -0.09 -1.02 5.20 29.85 0.16 -0.86 16 4 C 0.14 2.06 2.56 44.99 0.12 2.17 16 5 H 0.09 1.45 7.58 -2.39 -0.02 1.43 16 6 C -0.16 -1.98 9.48 71.98 0.68 -1.30 16 7 N -0.68 -13.90 4.78 -443.97 -2.12 -16.02 16 8 C 0.52 13.48 7.85 87.24 0.68 14.17 16 9 O -0.53 -14.41 16.14 -3.29 -0.05 -14.47 16 10 C 0.49 15.74 7.73 87.24 0.67 16.41 16 11 O -0.52 -20.79 13.91 -3.32 -0.05 -20.83 16 12 N -0.63 -18.66 5.32 -304.89 -1.62 -20.28 16 13 C 0.17 6.32 6.29 38.20 0.24 6.56 16 14 C -0.20 -6.00 9.97 22.44 0.22 -5.78 16 15 C -0.05 -1.51 10.03 22.23 0.22 -1.29 16 16 C -0.25 -10.72 9.17 22.42 0.21 -10.51 16 17 C 0.13 6.67 6.64 22.56 0.15 6.82 16 18 O -0.23 -14.55 9.76 -22.78 -0.22 -14.77 16 19 C -0.41 -24.45 9.49 67.92 0.64 -23.81 16 20 H 0.11 5.69 5.20 -2.91 -0.02 5.68 16 21 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 22 N -0.92 -58.09 13.67 21.61 0.30 -57.80 16 23 Si 1.02 43.30 29.55 68.60 2.03 45.32 16 24 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 27 C -0.21 -9.83 8.64 22.52 0.19 -9.64 16 28 H 0.10 1.57 7.84 -2.91 -0.02 1.54 16 29 H 0.09 1.60 8.06 -2.91 -0.02 1.58 16 30 H 0.11 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.83 7.79 -2.39 -0.02 0.81 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.42 8.49 8.07 -92.71 -0.75 7.74 16 37 H 0.43 9.97 8.30 -92.71 -0.77 9.20 16 38 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 39 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.13 5.42 5.63 -2.91 -0.02 5.40 16 41 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.11 5.56 6.23 -2.91 -0.02 5.54 16 Total: -1.00 -79.08 366.31 3.67 -75.41 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: -0.45 Total: 36.05 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 5.87 Total: -12.60 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -3.45 Total: -94.10 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -0.32 Total: -50.08 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -79.08 3.67 -75.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265307047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.448 kcal (2) G-P(sol) polarization free energy of solvation -79.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds