Wall clock time and date at job start Tue Mar 31 2020 12:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00414 * 2 1 4 4 C 1.53003 * 109.46733 * 125.00088 * 3 2 1 5 5 H 1.08998 * 109.47440 * 304.99816 * 4 3 2 6 6 C 1.53000 * 109.46850 * 185.00090 * 4 3 2 7 7 N 1.46497 * 109.47315 * 65.00196 * 4 3 2 8 8 C 1.34779 * 120.00313 * 204.99689 * 7 4 3 9 9 O 1.21361 * 119.99606 * 359.97438 * 8 7 4 10 10 C 1.49349 * 120.00017 * 180.02562 * 8 7 4 11 11 O 1.21371 * 120.00382 * 359.97438 * 10 8 7 12 12 N 1.34780 * 119.99422 * 180.27497 * 10 8 7 13 13 C 1.39729 * 119.99469 * 175.21728 * 12 10 8 14 14 C 1.39019 * 120.03808 * 214.86097 * 13 12 10 15 15 C 1.38144 * 120.06084 * 179.74511 * 14 13 12 16 16 C 1.38184 * 120.14245 * 0.55610 * 15 14 13 17 17 C 1.38920 * 120.08313 * 359.70122 * 16 15 14 18 18 O 1.35748 * 120.03211 * 180.02562 * 17 16 15 19 19 C 1.34825 * 116.99965 * 5.36297 * 18 17 16 20 20 H 1.08000 * 120.00003 * 354.96125 * 19 18 17 21 21 C 1.38653 * 119.99913 * 174.96641 * 19 18 17 22 22 N 1.31560 * 120.00197 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00127 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46877 * 60.00199 * 23 21 19 25 25 H 1.48501 * 109.47489 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47424 * 300.00537 * 23 21 19 27 27 C 1.38766 * 119.93562 * 0.02562 * 17 16 15 28 28 H 1.08004 * 119.99303 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.00409 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99303 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47172 * 5.00346 * 3 2 1 32 32 H 1.08998 * 109.47477 * 245.00054 * 3 2 1 33 33 H 1.09001 * 109.47606 * 59.99689 * 6 4 3 34 34 H 1.08999 * 109.47552 * 180.02562 * 6 4 3 35 35 H 1.09004 * 109.47302 * 299.99929 * 6 4 3 36 36 H 0.97007 * 120.00271 * 25.00155 * 7 4 3 37 37 H 0.96992 * 120.00438 * 355.21901 * 12 10 8 38 38 H 1.08006 * 119.97641 * 0.02562 * 14 13 12 39 39 H 1.08002 * 119.93148 * 180.27005 * 15 14 13 40 40 H 1.07992 * 119.95653 * 179.71989 * 16 15 14 41 41 H 0.96994 * 120.00210 * 179.97438 * 22 21 19 42 42 H 1.07999 * 120.06885 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3328 1.1817 5 1 2.4884 1.1467 2.1061 6 6 3.7094 2.7043 1.2553 7 7 4.0547 0.2966 1.0002 8 6 4.6912 -0.2175 2.0712 9 8 4.4201 0.1784 3.1859 10 6 5.7310 -1.2735 1.8860 11 8 6.0025 -1.6691 0.7712 12 7 6.3636 -1.7914 2.9575 13 6 7.2631 -2.8482 2.7943 14 6 7.3661 -3.8316 3.7715 15 6 8.2514 -4.8793 3.6082 16 6 9.0454 -4.9474 2.4793 17 6 8.9512 -3.9651 1.5015 18 8 9.7313 -4.0332 0.3926 19 6 10.4945 -5.1351 0.2480 20 1 10.5291 -5.8751 1.0339 21 6 11.2351 -5.3184 -0.9098 22 7 11.1934 -4.4168 -1.8670 23 14 12.2931 -6.8448 -1.1100 24 1 11.4351 -8.0547 -1.0377 25 1 12.9787 -6.8028 -2.4267 26 1 13.3061 -6.8908 -0.0251 27 6 8.0589 -2.9141 1.6595 28 1 -0.5399 0.9354 0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6214 1.4025 -0.9313 33 1 2.9509 3.4754 1.3903 34 1 4.4019 2.7241 2.0968 35 1 4.2562 2.8905 0.3309 36 1 4.2717 -0.0196 0.1091 37 1 6.1944 -1.4307 3.8418 38 1 6.7501 -3.7789 4.6572 39 1 8.3266 -5.6445 4.3667 40 1 9.7397 -5.7654 2.3568 41 1 11.7118 -4.5448 -2.6767 42 1 7.9836 -2.1495 0.9005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265307049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:27 Heat of formation + Delta-G solvation = -48.254586 kcal Electronic energy + Delta-G solvation = -25480.336299 eV Core-core repulsion = 21620.065097 eV Total energy + Delta-G solvation = -3860.271201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.93287 -39.45757 -38.44657 -37.05400 -36.60436 -34.40909 -33.76254 -32.26669 -31.23721 -29.64819 -28.64531 -27.06091 -25.54617 -24.97235 -22.44712 -21.62252 -21.16418 -20.31053 -20.12376 -18.75775 -18.10374 -17.08345 -16.97355 -16.05998 -15.74867 -15.61373 -15.26433 -15.09739 -14.60609 -14.35945 -14.24702 -14.00549 -13.60504 -13.55288 -13.42411 -13.04819 -12.83598 -12.55250 -12.52563 -12.04245 -11.82239 -11.65994 -11.57090 -11.50111 -11.28854 -11.12893 -11.01825 -10.77944 -10.49280 -9.85908 -9.73648 -9.65866 -9.43536 -9.21178 -8.83162 -7.79601 -7.23257 -6.43823 -4.03149 1.26401 1.94364 2.09017 2.30226 2.36294 3.13624 3.14558 3.17866 3.24053 3.57480 3.97622 4.31750 4.42813 4.53750 4.56991 4.69246 4.95655 5.04104 5.10178 5.21264 5.28571 5.35302 5.41146 5.59142 5.60922 5.63955 5.79356 5.88996 6.03370 6.07199 6.13436 6.30734 6.30902 6.41099 6.55645 6.68414 6.95549 6.99813 7.04766 7.31281 7.41907 7.47194 7.66769 7.76391 8.00352 8.07400 9.00889 9.70988 10.73865 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016832 B = 0.002626 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.065151 B =10659.164863 C =11473.793534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.156 4.156 3 C -0.102 4.102 4 C 0.144 3.856 5 H 0.094 0.906 6 C -0.166 4.166 7 N -0.696 5.696 8 C 0.515 3.485 9 O -0.522 6.522 10 C 0.497 3.503 11 O -0.489 6.489 12 N -0.637 5.637 13 C 0.167 3.833 14 C -0.229 4.229 15 C -0.058 4.058 16 C -0.241 4.241 17 C 0.166 3.834 18 O -0.172 6.172 19 C -0.393 4.393 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.185 4.185 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.414 0.586 37 H 0.418 0.582 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.271 0.729 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.575 9.991 6.345 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.174 4.174 3 C -0.140 4.140 4 C 0.040 3.960 5 H 0.112 0.888 6 C -0.224 4.224 7 N -0.350 5.350 8 C 0.296 3.704 9 O -0.398 6.398 10 C 0.278 3.722 11 O -0.362 6.362 12 N -0.283 5.283 13 C 0.075 3.925 14 C -0.250 4.250 15 C -0.077 4.077 16 C -0.261 4.261 17 C 0.111 3.889 18 O -0.075 6.075 19 C -0.469 4.469 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.206 4.206 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.129 0.871 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.251 0.749 37 H 0.255 0.745 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.147 0.853 41 H 0.081 0.919 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.480 10.228 5.882 20.268 hybrid contribution 0.516 -0.842 -0.047 0.988 sum -15.964 9.386 5.835 19.416 Atomic orbital electron populations 1.23863 0.95868 1.01926 1.01129 1.22952 0.96143 0.98496 0.99851 1.21109 0.98048 0.96492 0.98342 1.21075 0.87991 0.87144 0.99758 0.88823 1.22212 1.01520 0.95735 1.02982 1.45873 1.39162 1.39774 1.10158 1.20091 0.82518 0.82643 0.85189 1.90749 1.64466 1.60601 1.23955 1.20145 0.82912 0.83601 0.85521 1.90862 1.63124 1.58671 1.23585 1.43001 1.41008 1.33540 1.10776 1.17178 0.90872 0.88223 0.96259 1.20306 1.06531 0.97214 1.00990 1.20522 0.94438 0.96285 0.96424 1.21218 1.05756 1.02869 0.96282 1.19105 0.89410 0.92755 0.87647 1.83985 1.48105 1.40452 1.34949 1.21304 1.23390 0.98226 1.03966 0.88990 1.25304 0.97792 0.98981 0.94417 1.70039 1.39056 1.33759 1.06617 0.85774 0.79419 0.80083 0.78100 1.19476 1.20284 1.19476 1.20151 0.98605 1.01752 1.00086 0.88565 0.88416 0.87102 0.89544 0.89920 0.91235 0.91674 0.91954 0.74897 0.74547 0.87078 0.86819 0.85316 0.91931 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.34 14.32 29.01 0.42 -0.93 16 2 C -0.16 -1.21 9.25 -36.03 -0.33 -1.54 16 3 C -0.10 -0.66 5.20 -27.88 -0.15 -0.80 16 4 C 0.14 1.19 2.56 -67.93 -0.17 1.01 16 5 H 0.09 0.88 7.58 -51.93 -0.39 0.49 16 6 C -0.17 -1.25 9.48 37.16 0.35 -0.90 16 7 N -0.70 -7.20 4.76 -54.27 -0.26 -7.46 16 8 C 0.52 6.77 7.85 -11.63 -0.09 6.68 16 9 O -0.52 -7.47 16.14 5.49 0.09 -7.38 16 10 C 0.50 7.84 7.73 -11.63 -0.09 7.75 16 11 O -0.49 -9.21 13.91 5.48 0.08 -9.14 16 12 N -0.64 -9.88 5.32 -10.31 -0.05 -9.93 16 13 C 0.17 3.14 6.29 -83.77 -0.53 2.61 16 14 C -0.23 -3.94 9.96 -39.33 -0.39 -4.33 16 15 C -0.06 -1.04 10.03 -39.64 -0.40 -1.44 16 16 C -0.24 -5.23 9.17 -39.35 -0.36 -5.60 16 17 C 0.17 4.11 6.64 -39.13 -0.26 3.85 16 18 O -0.17 -5.01 9.75 0.07 0.00 -5.01 16 19 C -0.39 -11.04 9.49 30.89 0.29 -10.75 16 20 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 21 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 23 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 27 C -0.18 -4.18 8.64 -39.19 -0.34 -4.51 16 28 H 0.10 0.55 7.84 -52.48 -0.41 0.14 16 29 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 30 H 0.11 0.96 8.03 -52.48 -0.42 0.54 16 31 H 0.09 0.43 7.79 -51.93 -0.40 0.03 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.41 4.07 8.07 -40.82 -0.33 3.74 16 37 H 0.42 5.34 8.30 -40.82 -0.34 5.00 16 38 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 40 H 0.13 2.75 5.63 -52.49 -0.30 2.46 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.13 3.19 6.23 -52.49 -0.33 2.86 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -33.03 366.27 -6.33 -39.36 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -5.29 Total: 11.12 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -2.14 Total: -7.88 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.45 Total: -42.11 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: 0.17 Total: -21.53 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.03 -6.33 -39.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265307049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.897 kcal (2) G-P(sol) polarization free energy of solvation -33.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds