Wall clock time and date at job start Tue Mar 31 2020 12:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00414 * 2 1 4 4 C 1.53003 * 109.46733 * 125.00088 * 3 2 1 5 5 H 1.08998 * 109.47440 * 304.99816 * 4 3 2 6 6 C 1.53000 * 109.46850 * 185.00090 * 4 3 2 7 7 N 1.46497 * 109.47315 * 65.00196 * 4 3 2 8 8 C 1.34779 * 120.00313 * 204.99689 * 7 4 3 9 9 O 1.21361 * 119.99606 * 359.97438 * 8 7 4 10 10 C 1.49349 * 120.00017 * 180.02562 * 8 7 4 11 11 O 1.21371 * 120.00382 * 359.97438 * 10 8 7 12 12 N 1.34780 * 119.99422 * 180.27497 * 10 8 7 13 13 C 1.39729 * 119.99469 * 175.21728 * 12 10 8 14 14 C 1.39019 * 120.03808 * 214.86097 * 13 12 10 15 15 C 1.38144 * 120.06084 * 179.74511 * 14 13 12 16 16 C 1.38184 * 120.14245 * 0.55610 * 15 14 13 17 17 C 1.38920 * 120.08313 * 359.70122 * 16 15 14 18 18 O 1.35748 * 120.03211 * 180.02562 * 17 16 15 19 19 C 1.34825 * 116.99965 * 5.36297 * 18 17 16 20 20 H 1.08000 * 120.00003 * 354.96125 * 19 18 17 21 21 C 1.38653 * 119.99913 * 174.96641 * 19 18 17 22 22 N 1.31560 * 120.00197 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00127 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46877 * 60.00199 * 23 21 19 25 25 H 1.48501 * 109.47489 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47424 * 300.00537 * 23 21 19 27 27 C 1.38766 * 119.93562 * 0.02562 * 17 16 15 28 28 H 1.08004 * 119.99303 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.00409 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99303 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47172 * 5.00346 * 3 2 1 32 32 H 1.08998 * 109.47477 * 245.00054 * 3 2 1 33 33 H 1.09001 * 109.47606 * 59.99689 * 6 4 3 34 34 H 1.08999 * 109.47552 * 180.02562 * 6 4 3 35 35 H 1.09004 * 109.47302 * 299.99929 * 6 4 3 36 36 H 0.97007 * 120.00271 * 25.00155 * 7 4 3 37 37 H 0.96992 * 120.00438 * 355.21901 * 12 10 8 38 38 H 1.08006 * 119.97641 * 0.02562 * 14 13 12 39 39 H 1.08002 * 119.93148 * 180.27005 * 15 14 13 40 40 H 1.07992 * 119.95653 * 179.71989 * 16 15 14 41 41 H 0.96994 * 120.00210 * 179.97438 * 22 21 19 42 42 H 1.07999 * 120.06885 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3328 1.1817 5 1 2.4884 1.1467 2.1061 6 6 3.7094 2.7043 1.2553 7 7 4.0547 0.2966 1.0002 8 6 4.6912 -0.2175 2.0712 9 8 4.4201 0.1784 3.1859 10 6 5.7310 -1.2735 1.8860 11 8 6.0025 -1.6691 0.7712 12 7 6.3636 -1.7914 2.9575 13 6 7.2631 -2.8482 2.7943 14 6 7.3661 -3.8316 3.7715 15 6 8.2514 -4.8793 3.6082 16 6 9.0454 -4.9474 2.4793 17 6 8.9512 -3.9651 1.5015 18 8 9.7313 -4.0332 0.3926 19 6 10.4945 -5.1351 0.2480 20 1 10.5291 -5.8751 1.0339 21 6 11.2351 -5.3184 -0.9098 22 7 11.1934 -4.4168 -1.8670 23 14 12.2931 -6.8448 -1.1100 24 1 11.4351 -8.0547 -1.0377 25 1 12.9787 -6.8028 -2.4267 26 1 13.3061 -6.8908 -0.0251 27 6 8.0589 -2.9141 1.6595 28 1 -0.5399 0.9354 0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6214 1.4025 -0.9313 33 1 2.9509 3.4754 1.3903 34 1 4.4019 2.7241 2.0968 35 1 4.2562 2.8905 0.3309 36 1 4.2717 -0.0196 0.1091 37 1 6.1944 -1.4307 3.8418 38 1 6.7501 -3.7789 4.6572 39 1 8.3266 -5.6445 4.3667 40 1 9.7397 -5.7654 2.3568 41 1 11.7118 -4.5448 -2.6767 42 1 7.9836 -2.1495 0.9005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265307049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:26 Heat of formation + Delta-G solvation = -71.751183 kcal Electronic energy + Delta-G solvation = -25481.355188 eV Core-core repulsion = 21620.065097 eV Total energy + Delta-G solvation = -3861.290090 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.18762 -40.87142 -39.95767 -38.28034 -37.87366 -35.76112 -34.62663 -34.25739 -32.02866 -31.28936 -30.25508 -27.63839 -27.40300 -26.34580 -23.85239 -23.10546 -22.22774 -21.51915 -20.72636 -20.18160 -19.69953 -18.84331 -18.08658 -17.20495 -17.06937 -16.80896 -16.74579 -16.16726 -16.03472 -15.86830 -15.64089 -15.41299 -15.08958 -14.65202 -14.41035 -14.29577 -14.10649 -13.64785 -13.59306 -13.24858 -13.19495 -13.09758 -12.76187 -12.67015 -12.51324 -12.35573 -12.16074 -12.15792 -11.87200 -11.41932 -11.31192 -10.77060 -10.70222 -10.44188 -10.17833 -9.43153 -8.94728 -8.46187 -6.15710 -0.03292 0.60000 0.68833 1.16729 1.35889 1.38307 1.47333 1.52853 2.00726 2.17947 2.48392 2.80801 3.15159 3.22640 3.55033 3.77170 3.92754 4.10512 4.11035 4.33760 4.35312 4.36874 4.43772 4.58882 4.68997 4.69993 4.70094 4.86094 4.95102 5.02491 5.06039 5.10347 5.21591 5.27895 5.30949 5.35435 5.60222 5.70525 5.74373 5.79916 5.89153 6.02550 6.12184 6.24260 6.64560 6.82225 6.97471 7.78360 8.77107 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016832 B = 0.002626 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.065151 B =10659.164863 C =11473.793534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.174 4.174 3 C -0.094 4.094 4 C 0.143 3.857 5 H 0.086 0.914 6 C -0.163 4.163 7 N -0.683 5.683 8 C 0.523 3.477 9 O -0.532 6.532 10 C 0.496 3.504 11 O -0.525 6.525 12 N -0.627 5.627 13 C 0.174 3.826 14 C -0.200 4.200 15 C -0.047 4.047 16 C -0.249 4.249 17 C 0.127 3.873 18 O -0.231 6.231 19 C -0.415 4.415 20 H 0.107 0.893 21 C -0.025 4.025 22 N -0.923 5.923 23 Si 1.022 2.978 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.254 1.254 27 C -0.207 4.207 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.417 0.583 37 H 0.434 0.566 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.127 0.873 41 H 0.272 0.728 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.477 9.629 8.999 22.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.192 4.192 3 C -0.131 4.131 4 C 0.040 3.960 5 H 0.104 0.896 6 C -0.221 4.221 7 N -0.336 5.336 8 C 0.303 3.697 9 O -0.409 6.409 10 C 0.278 3.722 11 O -0.400 6.400 12 N -0.275 5.275 13 C 0.080 3.920 14 C -0.220 4.220 15 C -0.065 4.065 16 C -0.269 4.269 17 C 0.076 3.924 18 O -0.138 6.138 19 C -0.491 4.491 20 H 0.125 0.875 21 C -0.222 4.222 22 N -0.561 5.561 23 Si 0.841 3.159 24 H -0.180 1.180 25 H -0.198 1.198 26 H -0.178 1.178 27 C -0.229 4.229 28 H 0.131 0.869 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.254 0.746 37 H 0.274 0.726 38 H 0.179 0.821 39 H 0.180 0.820 40 H 0.145 0.855 41 H 0.081 0.919 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.446 9.902 8.602 22.634 hybrid contribution 0.808 -0.593 -0.635 1.187 sum -17.637 9.309 7.966 21.476 Atomic orbital electron populations 1.24040 0.95680 1.02791 0.99789 1.22985 0.96586 0.98519 1.01139 1.21091 0.97839 0.96573 0.97619 1.21285 0.87610 0.86710 1.00410 0.89573 1.22193 1.01801 0.95743 1.02353 1.45984 1.38632 1.39451 1.09545 1.19546 0.82217 0.82237 0.85709 1.90748 1.64899 1.61002 1.24291 1.20738 0.82981 0.83603 0.84894 1.90864 1.64218 1.59865 1.25028 1.42944 1.40048 1.32804 1.11712 1.17307 0.90144 0.89362 0.95205 1.20912 1.04989 0.94907 1.01198 1.21045 0.92556 0.97288 0.95643 1.21390 1.06592 1.01957 0.96920 1.19625 0.90230 0.94677 0.87849 1.83954 1.50459 1.41769 1.37583 1.21873 1.23681 0.98646 1.04870 0.87535 1.26679 0.99174 1.02719 0.93671 1.70206 1.41429 1.36753 1.07692 0.84608 0.77495 0.75391 0.78449 1.18049 1.19824 1.17817 1.20163 0.99998 1.01284 1.01442 0.86864 0.88463 0.88783 0.87244 0.89271 0.88840 0.93618 0.91530 0.74616 0.72566 0.82074 0.82008 0.85535 0.91857 0.87434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.30 14.32 67.78 0.97 -1.33 16 2 C -0.17 -2.49 9.25 25.64 0.24 -2.25 16 3 C -0.09 -1.02 5.20 29.85 0.16 -0.86 16 4 C 0.14 2.14 2.56 44.99 0.12 2.26 16 5 H 0.09 1.48 7.58 -2.39 -0.02 1.46 16 6 C -0.16 -2.16 9.48 71.98 0.68 -1.48 16 7 N -0.68 -13.82 4.76 -443.97 -2.12 -15.93 16 8 C 0.52 13.45 7.85 87.24 0.68 14.14 16 9 O -0.53 -14.54 16.14 -3.28 -0.05 -14.59 16 10 C 0.50 15.66 7.73 87.24 0.67 16.34 16 11 O -0.52 -20.62 13.91 -3.31 -0.05 -20.66 16 12 N -0.63 -18.62 5.32 -304.89 -1.62 -20.24 16 13 C 0.17 6.30 6.29 38.20 0.24 6.54 16 14 C -0.20 -6.02 9.96 22.43 0.22 -5.79 16 15 C -0.05 -1.51 10.03 22.23 0.22 -1.29 16 16 C -0.25 -10.70 9.17 22.42 0.21 -10.50 16 17 C 0.13 6.62 6.64 22.56 0.15 6.77 16 18 O -0.23 -14.47 9.75 -22.66 -0.22 -14.69 16 19 C -0.41 -24.54 9.49 67.92 0.64 -23.89 16 20 H 0.11 5.66 5.20 -2.91 -0.02 5.64 16 21 C -0.03 -1.46 5.49 84.83 0.47 -0.99 16 22 N -0.92 -58.11 13.67 21.61 0.30 -57.81 16 23 Si 1.02 43.19 29.55 68.60 2.03 45.22 16 24 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 26 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 27 C -0.21 -9.78 8.64 22.52 0.19 -9.58 16 28 H 0.11 1.00 7.84 -2.91 -0.02 0.98 16 29 H 0.10 1.18 8.06 -2.91 -0.02 1.16 16 30 H 0.09 1.63 8.03 -2.91 -0.02 1.61 16 31 H 0.11 0.74 7.79 -2.39 -0.02 0.72 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 36 H 0.42 8.23 8.07 -92.70 -0.75 7.48 16 37 H 0.43 9.97 8.30 -92.71 -0.77 9.20 16 38 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 39 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.13 5.41 5.63 -2.91 -0.02 5.39 16 41 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 42 H 0.11 5.56 6.23 -2.91 -0.02 5.54 16 Total: -1.00 -78.99 366.27 3.68 -75.31 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.45 Total: 35.32 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 5.87 Total: -11.93 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -3.44 Total: -93.98 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -0.32 Total: -49.94 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -78.99 3.68 -75.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265307049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.559 kcal (2) G-P(sol) polarization free energy of solvation -78.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds