Wall clock time and date at job start Tue Mar 31 2020 13:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47028 * 2 1 4 4 C 1.46496 * 120.00356 * 74.94504 * 3 2 1 5 5 C 1.50702 * 109.46722 * 90.00069 * 4 3 2 6 6 H 1.07996 * 120.00168 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99823 * 180.02562 * 5 4 3 8 8 N 1.31506 * 119.99933 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99914 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46721 * 90.00002 * 9 7 5 11 11 H 1.48497 * 109.47196 * 209.99626 * 9 7 5 12 12 H 1.48496 * 109.47142 * 330.00366 * 9 7 5 13 13 C 1.34778 * 119.99606 * 254.95046 * 3 2 1 14 14 O 1.21553 * 119.99771 * 183.59388 * 13 3 2 15 15 C 1.47862 * 120.00309 * 3.58334 * 13 3 2 16 16 C 1.39618 * 120.10806 * 22.90610 * 15 13 3 17 17 C 1.37975 * 119.99549 * 179.73957 * 16 15 13 18 18 C 1.38256 * 120.22263 * 0.53764 * 17 16 15 19 19 C 1.38939 * 120.22060 * 359.73700 * 18 17 16 20 20 N 1.39984 * 119.99988 * 180.02562 * 19 18 17 21 21 C 1.47094 * 125.55925 * 359.97438 * 20 19 18 22 22 C 1.54091 * 103.77999 * 179.97438 * 21 20 19 23 23 O 1.45692 * 104.00941 * 359.97438 * 22 21 20 24 24 C 1.33784 * 109.47709 * 359.73509 * 23 22 21 25 25 O 1.21513 * 123.07524 * 180.26455 * 24 23 22 26 26 C 1.38634 * 120.00507 * 359.97438 * 19 18 17 27 27 H 1.08999 * 109.46998 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47470 * 300.00151 * 1 2 3 29 29 H 1.08996 * 109.47066 * 60.00529 * 1 2 3 30 30 H 1.08998 * 109.47067 * 239.99187 * 2 1 3 31 31 H 1.09002 * 109.46647 * 119.99360 * 2 1 3 32 32 H 1.08993 * 109.47202 * 330.00605 * 4 3 2 33 33 H 1.08997 * 109.47520 * 209.99562 * 4 3 2 34 34 H 0.97003 * 120.00009 * 179.97438 * 8 7 5 35 35 H 1.08003 * 120.00335 * 359.97438 * 16 15 13 36 36 H 1.08003 * 119.89440 * 180.24781 * 17 16 15 37 37 H 1.07999 * 119.89545 * 179.76282 * 18 17 16 38 38 H 1.09001 * 110.56084 * 298.57127 * 21 20 19 39 39 H 1.08999 * 110.56564 * 61.27377 * 21 20 19 40 40 H 1.09003 * 110.52001 * 118.63118 * 22 21 20 41 41 H 1.08995 * 110.51724 * 241.36478 * 22 21 20 42 42 H 1.07994 * 120.11186 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9518 2.1817 1.2251 5 6 3.2227 1.9988 2.0142 6 1 4.0020 1.3515 1.6403 7 6 3.3903 2.6581 3.2135 8 7 2.4415 3.4468 3.6686 9 14 4.9653 2.4308 4.1920 10 1 5.9585 3.4533 3.7756 11 1 4.6748 2.5839 5.6402 12 1 5.5147 1.0748 3.9378 13 6 2.5287 1.9155 -1.1272 14 8 2.9936 3.0385 -1.1111 15 6 2.5233 1.1355 -2.3834 16 6 1.6096 0.0942 -2.5573 17 6 1.6030 -0.6286 -3.7326 18 6 2.5064 -0.3329 -4.7365 19 6 3.4234 0.6977 -4.5708 20 7 4.3357 0.9935 -5.5905 21 6 4.4319 0.2949 -6.8815 22 6 5.5844 1.0178 -7.6050 23 8 6.0120 2.0375 -6.6563 24 6 5.2591 1.9639 -5.5529 25 8 5.4025 2.7061 -4.6015 26 6 3.4343 1.4339 -3.3961 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.1017 1.8575 1.8253 33 1 1.8335 3.2338 0.9658 34 1 2.5593 3.9102 4.5125 35 1 0.9055 -0.1430 -1.7735 36 1 0.8929 -1.4311 -3.8670 37 1 2.4992 -0.9046 -5.6527 38 1 4.6741 -0.7570 -6.7304 39 1 3.5023 0.3960 -7.4417 40 1 6.3989 0.3243 -7.8141 41 1 5.2278 1.4788 -8.5261 42 1 4.1466 2.2350 -3.2654 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267347495.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:51 Heat of formation + Delta-G solvation = -28.011182 kcal Electronic energy + Delta-G solvation = -26705.466517 eV Core-core repulsion = 22846.073135 eV Total energy + Delta-G solvation = -3859.393382 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.16024 -40.08885 -38.21804 -37.47911 -35.87059 -35.35002 -32.84889 -31.18849 -31.04581 -30.26299 -29.16326 -27.19400 -24.80813 -24.06917 -23.39632 -22.98999 -21.63639 -21.22460 -19.17178 -17.99053 -17.80207 -17.34897 -16.68802 -16.37139 -15.99226 -15.60467 -15.20231 -14.77773 -14.56084 -14.51433 -14.35691 -14.09166 -13.73972 -13.67149 -13.39315 -13.18236 -12.83357 -12.67061 -12.18261 -12.03413 -11.84524 -11.59958 -11.31619 -11.13590 -11.09912 -10.86832 -10.78181 -10.53649 -10.31310 -10.19548 -10.03054 -9.58285 -9.01364 -8.85052 -8.37395 -8.10031 -7.62812 -5.98645 -4.02608 0.96202 1.29363 1.95745 2.47418 3.00953 3.34756 3.36748 3.43001 3.45661 3.60901 3.85515 4.11002 4.18916 4.21243 4.50890 4.67510 4.73941 4.78446 4.92968 4.93870 5.14117 5.17606 5.33436 5.36628 5.41302 5.54742 5.58451 5.75183 5.89820 5.99267 6.16027 6.26862 6.27717 6.30271 6.50909 6.55384 6.88425 7.06232 7.13725 7.48723 7.58355 7.71877 7.98043 8.29168 8.43538 8.95415 9.12171 9.62101 11.09554 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.003576 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.650871 B = 7827.635266 C = 9116.252258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.073 3.927 3 N -0.587 5.587 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.541 3.459 14 O -0.526 6.526 15 C -0.086 4.086 16 C -0.145 4.145 17 C -0.103 4.103 18 C -0.142 4.142 19 C 0.166 3.834 20 N -0.570 5.570 21 C 0.060 3.940 22 C 0.042 3.958 23 O -0.321 6.321 24 C 0.638 3.362 25 O -0.485 6.485 26 C -0.100 4.100 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.035 0.965 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.168 0.832 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.068 -14.294 -24.169 28.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.050 4.050 3 N -0.318 5.318 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.328 3.672 14 O -0.403 6.403 15 C -0.090 4.090 16 C -0.164 4.164 17 C -0.121 4.121 18 C -0.163 4.163 19 C 0.074 3.926 20 N -0.308 5.308 21 C -0.062 4.062 22 C -0.033 4.033 23 O -0.231 6.231 24 C 0.393 3.607 25 O -0.367 6.367 26 C -0.121 4.121 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.185 0.815 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.532 -12.974 -23.563 26.942 hybrid contribution 0.786 -0.347 0.414 0.954 sum -0.746 -13.321 -23.149 26.718 Atomic orbital electron populations 1.22285 0.96532 1.01805 1.02964 1.22297 0.93855 0.84907 1.03982 1.48122 1.59188 1.13001 1.11498 1.19296 0.97187 0.91560 0.79155 1.21440 1.02447 1.27887 1.04574 0.92413 1.24922 0.96765 0.94932 0.97458 1.69929 1.32971 1.29538 1.21060 0.86500 0.83523 0.78601 0.78820 1.20502 1.21185 1.19939 1.18132 0.79495 0.86515 0.83083 1.90786 1.44996 1.19399 1.85167 1.20183 0.96754 0.96672 0.95411 1.22659 1.00222 0.94847 0.98640 1.20881 0.98402 1.00144 0.92693 1.20757 0.96894 0.98021 1.00646 1.17226 0.90956 0.97100 0.87277 1.45325 1.34471 1.34074 1.16928 1.22950 1.00697 0.98758 0.83823 1.24330 0.97186 0.89445 0.92369 1.87355 1.54890 1.53848 1.27032 1.18531 0.78372 0.80894 0.82936 1.91080 1.70225 1.44628 1.30788 1.21706 0.99850 1.00183 0.90358 0.91777 0.91130 0.92276 0.88564 0.90473 0.94689 0.93830 0.92764 0.81507 0.85001 0.85714 0.88159 0.88185 0.87149 0.87191 0.81558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 9.05 37.16 0.34 -2.04 16 2 C 0.07 1.20 5.59 -4.04 -0.02 1.18 16 3 N -0.59 -13.06 2.49 -176.17 -0.44 -13.50 16 4 C 0.25 6.65 5.08 -5.20 -0.03 6.62 16 5 C -0.52 -15.44 9.39 -34.44 -0.32 -15.76 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 9 Si 0.90 22.66 29.54 -169.99 -5.02 17.63 16 10 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.54 12.53 7.52 -12.32 -0.09 12.43 16 14 O -0.53 -14.71 16.19 5.32 0.09 -14.62 16 15 C -0.09 -1.56 5.61 -104.99 -0.59 -2.15 16 16 C -0.15 -1.96 7.51 -39.16 -0.29 -2.26 16 17 C -0.10 -1.05 10.02 -39.67 -0.40 -1.44 16 18 C -0.14 -1.43 9.49 -39.32 -0.37 -1.80 16 19 C 0.17 2.24 6.63 -83.73 -0.55 1.68 16 20 N -0.57 -6.56 3.16 -118.30 -0.37 -6.93 16 21 C 0.06 0.31 6.47 -3.15 -0.02 0.29 16 22 C 0.04 0.19 8.23 37.73 0.31 0.50 16 23 O -0.32 -3.62 11.09 -37.86 -0.42 -4.04 16 24 C 0.64 9.31 8.77 53.71 0.47 9.78 16 25 O -0.49 -9.58 14.74 -19.12 -0.28 -9.86 16 26 C -0.10 -1.80 8.85 -38.98 -0.34 -2.15 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.07 7.42 -51.93 -0.39 0.69 16 29 H 0.06 0.75 7.03 -51.93 -0.36 0.39 16 30 H 0.10 1.37 4.03 -52.47 -0.21 1.16 16 31 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.04 0.93 7.32 -51.93 -0.38 0.55 16 33 H 0.04 1.33 7.47 -51.93 -0.39 0.94 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.17 2.06 2.32 -52.48 -0.12 1.94 16 36 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 37 H 0.12 0.78 7.29 -52.49 -0.38 0.40 16 38 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.11 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.17 3.59 5.00 -52.49 -0.26 3.33 16 LS Contribution 346.38 15.07 5.22 5.22 Total: -1.00 -39.39 346.38 -7.51 -46.90 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.00 Total: -0.89 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -2.02 Total: 6.59 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.08 Total: -46.93 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.62 Total: -28.52 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -39.39 -7.51 -46.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267347495.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.888 kcal (2) G-P(sol) polarization free energy of solvation -39.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds