Wall clock time and date at job start Tue Mar 31 2020 13:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47028 * 2 1 4 4 C 1.46496 * 120.00356 * 74.94504 * 3 2 1 5 5 C 1.50702 * 109.46722 * 90.00069 * 4 3 2 6 6 H 1.07996 * 120.00168 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99823 * 180.02562 * 5 4 3 8 8 N 1.31506 * 119.99933 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99914 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46721 * 90.00002 * 9 7 5 11 11 H 1.48497 * 109.47196 * 209.99626 * 9 7 5 12 12 H 1.48496 * 109.47142 * 330.00366 * 9 7 5 13 13 C 1.34778 * 119.99606 * 254.95046 * 3 2 1 14 14 O 1.21553 * 119.99771 * 183.59388 * 13 3 2 15 15 C 1.47862 * 120.00309 * 3.58334 * 13 3 2 16 16 C 1.39618 * 120.10806 * 22.90610 * 15 13 3 17 17 C 1.37975 * 119.99549 * 179.73957 * 16 15 13 18 18 C 1.38256 * 120.22263 * 0.53764 * 17 16 15 19 19 C 1.38939 * 120.22060 * 359.73700 * 18 17 16 20 20 N 1.39984 * 119.99988 * 180.02562 * 19 18 17 21 21 C 1.47094 * 125.55925 * 359.97438 * 20 19 18 22 22 C 1.54091 * 103.77999 * 179.97438 * 21 20 19 23 23 O 1.45692 * 104.00941 * 359.97438 * 22 21 20 24 24 C 1.33784 * 109.47709 * 359.73509 * 23 22 21 25 25 O 1.21513 * 123.07524 * 180.26455 * 24 23 22 26 26 C 1.38634 * 120.00507 * 359.97438 * 19 18 17 27 27 H 1.08999 * 109.46998 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47470 * 300.00151 * 1 2 3 29 29 H 1.08996 * 109.47066 * 60.00529 * 1 2 3 30 30 H 1.08998 * 109.47067 * 239.99187 * 2 1 3 31 31 H 1.09002 * 109.46647 * 119.99360 * 2 1 3 32 32 H 1.08993 * 109.47202 * 330.00605 * 4 3 2 33 33 H 1.08997 * 109.47520 * 209.99562 * 4 3 2 34 34 H 0.97003 * 120.00009 * 179.97438 * 8 7 5 35 35 H 1.08003 * 120.00335 * 359.97438 * 16 15 13 36 36 H 1.08003 * 119.89440 * 180.24781 * 17 16 15 37 37 H 1.07999 * 119.89545 * 179.76282 * 18 17 16 38 38 H 1.09001 * 110.56084 * 298.57127 * 21 20 19 39 39 H 1.08999 * 110.56564 * 61.27377 * 21 20 19 40 40 H 1.09003 * 110.52001 * 118.63118 * 22 21 20 41 41 H 1.08995 * 110.51724 * 241.36478 * 22 21 20 42 42 H 1.07994 * 120.11186 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9518 2.1817 1.2251 5 6 3.2227 1.9988 2.0142 6 1 4.0020 1.3515 1.6403 7 6 3.3903 2.6581 3.2135 8 7 2.4415 3.4468 3.6686 9 14 4.9653 2.4308 4.1920 10 1 5.9585 3.4533 3.7756 11 1 4.6748 2.5839 5.6402 12 1 5.5147 1.0748 3.9378 13 6 2.5287 1.9155 -1.1272 14 8 2.9936 3.0385 -1.1111 15 6 2.5233 1.1355 -2.3834 16 6 1.6096 0.0942 -2.5573 17 6 1.6030 -0.6286 -3.7326 18 6 2.5064 -0.3329 -4.7365 19 6 3.4234 0.6977 -4.5708 20 7 4.3357 0.9935 -5.5905 21 6 4.4319 0.2949 -6.8815 22 6 5.5844 1.0178 -7.6050 23 8 6.0120 2.0375 -6.6563 24 6 5.2591 1.9639 -5.5529 25 8 5.4025 2.7061 -4.6015 26 6 3.4343 1.4339 -3.3961 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.1017 1.8575 1.8253 33 1 1.8335 3.2338 0.9658 34 1 2.5593 3.9102 4.5125 35 1 0.9055 -0.1430 -1.7735 36 1 0.8929 -1.4311 -3.8670 37 1 2.4992 -0.9046 -5.6527 38 1 4.6741 -0.7570 -6.7304 39 1 3.5023 0.3960 -7.4417 40 1 6.3989 0.3243 -7.8141 41 1 5.2278 1.4788 -8.5261 42 1 4.1466 2.2350 -3.2654 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267347495.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:50 Heat of formation + Delta-G solvation = -57.804324 kcal Electronic energy + Delta-G solvation = -26706.758444 eV Core-core repulsion = 22846.073135 eV Total energy + Delta-G solvation = -3860.685309 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.01438 -41.48947 -39.51351 -38.61210 -37.39851 -36.53573 -34.97719 -32.39569 -32.19975 -31.43283 -30.01196 -29.18966 -25.95933 -25.24681 -24.65824 -24.36955 -22.96457 -22.21665 -20.52050 -19.21990 -18.66004 -18.52301 -18.28543 -17.81407 -17.31030 -17.13821 -16.55244 -16.17666 -16.00531 -15.53835 -15.21448 -15.16888 -14.97915 -14.81784 -14.73013 -14.40780 -14.27919 -13.56543 -13.49307 -13.32668 -13.31793 -13.12177 -12.86383 -12.72927 -12.65132 -12.28385 -12.24010 -12.00497 -11.75776 -11.74288 -11.42942 -11.16874 -10.70142 -10.68942 -10.04684 -9.50989 -9.08435 -8.27052 -6.41709 -0.15575 0.21955 1.12448 1.30800 1.35866 1.43298 1.45034 1.92194 2.21682 2.36924 2.45306 2.82683 3.02026 3.23563 3.38375 3.63986 3.95711 3.97172 4.02480 4.13022 4.28554 4.30793 4.33291 4.44088 4.51105 4.59745 4.70384 4.71123 4.83408 4.92262 4.95542 5.03662 5.12800 5.25295 5.27434 5.35846 5.41228 5.44668 5.53539 5.79063 5.91092 6.01799 6.17916 6.63340 6.69111 6.72138 7.21271 7.37627 8.80319 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.003576 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.650871 B = 7827.635266 C = 9116.252258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.064 3.936 3 N -0.590 5.590 4 C 0.263 3.737 5 C -0.547 4.547 6 H 0.047 0.953 7 C 0.009 3.991 8 N -0.926 5.926 9 Si 0.967 3.033 10 H -0.284 1.284 11 H -0.266 1.266 12 H -0.262 1.262 13 C 0.528 3.472 14 O -0.601 6.601 15 C -0.116 4.116 16 C -0.142 4.142 17 C -0.078 4.078 18 C -0.109 4.109 19 C 0.163 3.837 20 N -0.567 5.567 21 C 0.055 3.945 22 C 0.033 3.967 23 O -0.340 6.340 24 C 0.630 3.370 25 O -0.560 6.560 26 C -0.140 4.140 27 H 0.113 0.887 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.129 0.871 31 H 0.068 0.932 32 H 0.035 0.965 33 H -0.008 1.008 34 H 0.269 0.731 35 H 0.180 0.820 36 H 0.192 0.808 37 H 0.186 0.814 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.382 -19.719 -27.655 34.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.057 4.057 3 N -0.320 5.320 4 C 0.142 3.858 5 C -0.586 4.586 6 H 0.065 0.935 7 C -0.190 4.190 8 N -0.565 5.565 9 Si 0.791 3.209 10 H -0.211 1.211 11 H -0.191 1.191 12 H -0.186 1.186 13 C 0.318 3.682 14 O -0.484 6.484 15 C -0.120 4.120 16 C -0.160 4.160 17 C -0.096 4.096 18 C -0.129 4.129 19 C 0.071 3.929 20 N -0.304 5.304 21 C -0.065 4.065 22 C -0.040 4.040 23 O -0.250 6.250 24 C 0.386 3.614 25 O -0.448 6.448 26 C -0.161 4.161 27 H 0.131 0.869 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.146 0.854 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.010 0.990 34 H 0.078 0.922 35 H 0.197 0.803 36 H 0.209 0.791 37 H 0.203 0.797 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.879 -18.501 -27.115 32.951 hybrid contribution 1.184 1.271 1.285 2.160 sum -1.696 -17.230 -25.830 31.095 Atomic orbital electron populations 1.22237 0.93554 1.04690 1.02213 1.22765 0.96269 0.81507 1.05172 1.48148 1.59101 1.14926 1.09806 1.18745 0.96413 0.89751 0.80917 1.21688 1.03117 1.28346 1.05436 0.93491 1.25853 1.00391 0.94300 0.98481 1.70037 1.34897 1.29968 1.21629 0.85426 0.78743 0.78783 0.77917 1.21064 1.19089 1.18626 1.19152 0.77875 0.86204 0.85001 1.90717 1.48261 1.22797 1.86611 1.19733 1.00106 0.99061 0.93069 1.22772 0.98833 0.93471 1.00915 1.21537 0.98195 0.99597 0.90288 1.21415 0.93639 0.95414 1.02404 1.17362 0.92100 0.97340 0.86142 1.45468 1.32848 1.33524 1.18576 1.23555 1.02473 0.99778 0.80664 1.24970 0.98478 0.88800 0.91761 1.87314 1.54586 1.56078 1.26998 1.18868 0.78895 0.80831 0.82838 1.91046 1.72353 1.47516 1.33849 1.21420 1.00288 1.01057 0.93354 0.86870 0.93680 0.91326 0.85375 0.91332 0.94706 0.98978 0.92237 0.80313 0.79127 0.79718 0.84665 0.84715 0.84183 0.84230 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 9.05 71.98 0.65 -3.58 16 2 C 0.06 2.10 5.59 86.38 0.48 2.58 16 3 N -0.59 -28.20 2.49 -829.56 -2.07 -30.27 16 4 C 0.26 15.40 5.08 85.63 0.44 15.83 16 5 C -0.55 -34.32 9.39 25.60 0.24 -34.08 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.55 5.46 84.66 0.46 1.01 16 8 N -0.93 -58.79 13.29 21.45 0.28 -58.51 16 9 Si 0.97 48.05 29.54 68.60 2.03 50.08 16 10 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 13 C 0.53 26.88 7.52 86.79 0.65 27.53 16 14 O -0.60 -38.11 16.19 -3.88 -0.06 -38.17 16 15 C -0.12 -4.41 5.61 -20.10 -0.11 -4.52 16 16 C -0.14 -3.43 7.51 22.54 0.17 -3.26 16 17 C -0.08 -1.07 10.02 22.21 0.22 -0.85 16 18 C -0.11 -1.47 9.49 22.44 0.21 -1.26 16 19 C 0.16 4.11 6.63 38.10 0.25 4.37 16 20 N -0.57 -12.05 3.16 -759.90 -2.40 -14.45 16 21 C 0.05 0.26 6.47 86.63 0.56 0.82 16 22 C 0.03 0.17 8.23 72.35 0.60 0.77 16 23 O -0.34 -7.61 11.09 -47.43 -0.53 -8.14 16 24 C 0.63 19.37 8.77 129.91 1.14 20.51 16 25 O -0.56 -25.04 14.74 19.64 0.29 -24.75 16 26 C -0.14 -5.40 8.85 22.66 0.20 -5.20 16 27 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.04 1.36 7.42 -2.39 -0.02 1.35 16 29 H 0.07 1.60 7.03 -2.39 -0.02 1.58 16 30 H 0.13 3.40 4.03 -2.89 -0.01 3.39 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.04 2.00 7.32 -2.39 -0.02 1.98 16 33 H -0.01 -0.54 7.47 -2.39 -0.02 -0.55 16 34 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 35 H 0.18 3.80 2.32 -2.91 -0.01 3.79 16 36 H 0.19 0.61 8.06 -2.91 -0.02 0.59 16 37 H 0.19 0.42 7.29 -2.91 -0.02 0.40 16 38 H 0.14 -0.22 8.14 -2.39 -0.02 -0.24 16 39 H 0.13 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.14 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.14 -0.10 8.14 -2.39 -0.02 -0.12 16 42 H 0.11 5.66 5.00 -2.91 -0.01 5.65 16 Total: -1.00 -105.65 346.38 4.77 -100.88 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: 1.06 Total: 2.67 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 6.17 Total: 20.67 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -4.19 Total: -103.23 kcal Atomic # 8 Polarization: -70.76 SS G_CDS: -0.30 Total: -71.06 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Total: -105.65 4.77 -100.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267347495.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.074 kcal (2) G-P(sol) polarization free energy of solvation -105.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds