Wall clock time and date at job start Tue Mar 31 2020 12:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.99707 * 2 1 4 4 C 1.54322 * 109.88256 * 121.09255 * 2 1 3 5 5 C 1.55161 * 102.94331 * 97.22538 * 4 2 1 6 6 C 1.54905 * 101.57891 * 35.49985 * 5 4 2 7 7 N 1.47283 * 109.85838 * 238.92873 * 2 1 3 8 8 C 1.34777 * 125.79239 * 59.49987 * 7 2 1 9 9 O 1.21354 * 120.00180 * 0.02562 * 8 7 2 10 10 C 1.49358 * 120.00166 * 180.02562 * 8 7 2 11 11 O 1.21380 * 119.99833 * 0.02562 * 10 8 7 12 12 N 1.34777 * 120.00166 * 180.02562 * 10 8 7 13 13 C 1.39715 * 120.00030 * 174.79194 * 12 10 8 14 14 C 1.39018 * 120.04468 * 146.39054 * 13 12 10 15 15 C 1.38146 * 120.06400 * 179.97438 * 14 13 12 16 16 C 1.38182 * 120.14207 * 359.97438 * 15 14 13 17 17 C 1.38918 * 120.08199 * 359.97438 * 16 15 14 18 18 O 1.35755 * 120.02623 * 180.02562 * 17 16 15 19 19 C 1.34824 * 117.00331 * 5.91051 * 18 17 16 20 20 H 1.08004 * 120.00047 * 5.40644 * 19 18 17 21 21 C 1.38657 * 120.00322 * 185.40821 * 19 18 17 22 22 N 1.31560 * 119.99538 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00087 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47096 * 59.99648 * 23 21 19 25 25 H 1.48503 * 109.47047 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47107 * 299.99525 * 23 21 19 27 27 C 1.38756 * 119.94207 * 359.79363 * 17 16 15 28 28 H 1.09002 * 109.47208 * 298.90094 * 1 2 3 29 29 H 1.08995 * 109.47434 * 58.90636 * 1 2 3 30 30 H 1.09007 * 109.47192 * 178.90821 * 1 2 3 31 31 H 1.09004 * 110.72270 * 338.86075 * 4 2 1 32 32 H 1.08996 * 110.72342 * 215.58854 * 4 2 1 33 33 H 1.08998 * 111.00273 * 277.42651 * 5 4 2 34 34 H 1.09001 * 111.03668 * 153.59029 * 5 4 2 35 35 H 1.09001 * 110.36902 * 81.82924 * 6 5 4 36 36 H 1.09006 * 110.36804 * 204.04239 * 6 5 4 37 37 H 0.96996 * 119.99517 * 354.78789 * 12 10 8 38 38 H 1.08006 * 119.96832 * 359.97438 * 14 13 12 39 39 H 1.07995 * 119.92377 * 179.97438 * 15 14 13 40 40 H 1.07995 * 119.95286 * 180.02562 * 16 15 14 41 41 H 0.96998 * 119.99470 * 179.97438 * 22 21 19 42 42 H 1.07999 * 120.07855 * 180.24828 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2427 5 6 2.3519 -2.1695 0.6925 6 6 2.8568 -1.8498 -0.7366 7 7 2.0303 -0.7149 -1.1865 8 6 1.7762 -0.3880 -2.4691 9 8 1.0792 0.5722 -2.7239 10 6 2.3524 -1.2075 -3.5769 11 8 3.0492 -2.1681 -3.3221 12 7 2.0988 -0.8803 -4.8595 13 6 2.7241 -1.5787 -5.8955 14 6 2.0545 -1.7914 -7.0950 15 6 2.6726 -2.4814 -8.1198 16 6 3.9579 -2.9619 -7.9564 17 6 4.6330 -2.7518 -6.7606 18 8 5.8958 -3.2239 -6.6015 19 6 6.4823 -3.7793 -7.6810 20 1 5.9837 -3.7551 -8.6388 21 6 7.7255 -4.3815 -7.5617 22 7 8.3330 -4.4106 -6.3951 23 14 8.5383 -5.1504 -9.0575 24 1 8.7413 -4.1117 -10.0992 25 1 9.8518 -5.7231 -8.6675 26 1 7.6683 -6.2271 -9.5950 27 6 4.0172 -2.0550 -5.7308 28 1 -0.3634 0.4967 0.8997 29 1 -0.3634 0.5307 -0.8800 30 1 -0.3634 -1.0275 -0.0196 31 1 1.2918 -0.7889 2.0202 32 1 2.9656 -0.2831 1.6183 33 1 1.4452 -2.7736 0.6606 34 1 3.1268 -2.6624 1.2796 35 1 3.9091 -1.5667 -0.7128 36 1 2.7105 -2.7088 -1.3917 37 1 1.4820 -0.1599 -5.0633 38 1 1.0499 -1.4167 -7.2259 39 1 2.1501 -2.6457 -9.0505 40 1 4.4383 -3.5006 -8.7597 41 1 9.2026 -4.8323 -6.3115 42 1 4.5415 -1.8870 -4.8017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267657993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:50 Heat of formation + Delta-G solvation = -55.931996 kcal Electronic energy + Delta-G solvation = -26179.888310 eV Core-core repulsion = 22319.284191 eV Total energy + Delta-G solvation = -3860.604119 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.04597 -39.62999 -38.54231 -37.67862 -36.60628 -34.22590 -32.27699 -32.08399 -31.38022 -29.65007 -28.65665 -26.15787 -25.60344 -25.11619 -22.94030 -22.02358 -21.36139 -20.65505 -19.53063 -18.37247 -17.83288 -17.05984 -16.86529 -16.40665 -15.63925 -15.47967 -15.12004 -14.79259 -14.51380 -14.24942 -13.88581 -13.77133 -13.70284 -13.54783 -13.32516 -12.90268 -12.81397 -12.59447 -12.49143 -12.27130 -11.85627 -11.69952 -11.57576 -11.21024 -11.13457 -11.01372 -10.97930 -10.91041 -10.79032 -10.49162 -9.88345 -9.58606 -9.22090 -8.95264 -8.83323 -7.77400 -7.23393 -6.44406 -4.03683 1.27801 2.09254 2.26613 2.32560 3.13569 3.14099 3.17557 3.25713 3.42778 3.96226 4.17988 4.31057 4.43821 4.55197 4.59295 4.89399 5.05239 5.10690 5.11746 5.25742 5.27386 5.44609 5.52810 5.58506 5.64188 5.67826 5.76516 5.80315 5.89962 5.93649 6.05219 6.09968 6.16299 6.29833 6.55232 6.72461 6.95628 7.02353 7.07303 7.30142 7.38041 7.42086 7.67264 7.76113 7.99809 8.09216 9.00388 9.70510 10.73313 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018464 B = 0.002987 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.126782 B = 9370.757102 C =10655.322652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 H 0.080 0.920 4 C -0.129 4.129 5 C -0.135 4.135 6 C 0.091 3.909 7 N -0.587 5.587 8 C 0.527 3.473 9 O -0.524 6.524 10 C 0.502 3.498 11 O -0.486 6.486 12 N -0.638 5.638 13 C 0.172 3.828 14 C -0.230 4.230 15 C -0.057 4.057 16 C -0.241 4.241 17 C 0.168 3.832 18 O -0.172 6.172 19 C -0.392 4.392 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.186 4.186 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.417 0.583 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.271 0.729 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.563 6.578 11.548 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.029 3.971 3 H 0.098 0.902 4 C -0.167 4.167 5 C -0.173 4.173 6 C -0.031 4.031 7 N -0.322 5.322 8 C 0.310 3.690 9 O -0.400 6.400 10 C 0.283 3.717 11 O -0.359 6.359 12 N -0.284 5.284 13 C 0.079 3.921 14 C -0.251 4.251 15 C -0.076 4.076 16 C -0.261 4.261 17 C 0.113 3.887 18 O -0.075 6.075 19 C -0.469 4.469 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.207 4.207 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.254 0.746 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.147 0.853 41 H 0.081 0.919 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.045 6.349 11.863 18.740 hybrid contribution 0.095 -0.054 -0.882 0.889 sum -12.950 6.295 10.981 18.108 Atomic orbital electron populations 1.22154 0.94316 1.02579 1.03131 1.21743 0.95030 0.96421 0.83901 0.90204 1.22738 1.02001 0.95799 0.96181 1.22844 1.02267 0.96682 0.95509 1.22757 0.94898 0.89791 0.95621 1.48419 1.49257 1.30381 1.04119 1.19736 0.81628 0.84929 0.82728 1.90732 1.37920 1.28163 1.83195 1.20042 0.82451 0.85236 0.83997 1.90818 1.35740 1.26344 1.82978 1.43023 1.45244 1.36245 1.03921 1.17151 0.91193 0.96471 0.87264 1.20295 1.00208 1.10145 0.94454 1.20524 0.94209 0.95621 0.97232 1.21216 0.96468 1.08895 0.99507 1.19076 0.85780 0.91538 0.92326 1.84002 1.21009 1.65466 1.37043 1.21296 1.01514 1.36682 0.87376 0.89027 1.25304 0.95953 0.96753 0.98475 1.70042 1.15173 1.40948 1.23289 0.85776 0.78517 0.79313 0.79793 1.19476 1.20281 1.19472 1.19989 0.93805 1.06508 1.00403 0.91472 0.90978 0.92324 0.89678 0.90279 0.90534 0.89408 0.90466 0.87734 0.74579 0.87082 0.86807 0.85298 0.91933 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.05 37.16 0.34 -1.11 16 2 C 0.13 1.24 3.51 -66.81 -0.23 1.00 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.13 -0.88 6.49 -24.89 -0.16 -1.04 16 5 C -0.13 -1.04 7.09 -24.58 -0.17 -1.21 16 6 C 0.09 1.02 6.06 -2.53 -0.02 1.01 16 7 N -0.59 -7.16 3.09 -163.36 -0.50 -7.67 16 8 C 0.53 7.65 7.70 -11.63 -0.09 7.56 16 9 O -0.52 -8.07 15.41 5.49 0.08 -7.98 16 10 C 0.50 8.24 7.59 -11.63 -0.09 8.15 16 11 O -0.49 -9.18 11.49 5.47 0.06 -9.12 16 12 N -0.64 -10.16 5.32 -10.31 -0.05 -10.22 16 13 C 0.17 3.25 6.26 -83.77 -0.52 2.73 16 14 C -0.23 -3.97 9.96 -39.33 -0.39 -4.36 16 15 C -0.06 -1.03 10.03 -39.64 -0.40 -1.43 16 16 C -0.24 -5.23 9.13 -39.35 -0.36 -5.59 16 17 C 0.17 4.15 6.64 -39.14 -0.26 3.89 16 18 O -0.17 -5.01 9.75 0.05 0.00 -5.00 16 19 C -0.39 -11.01 9.44 30.89 0.29 -10.71 16 20 H 0.09 2.35 5.29 -52.48 -0.28 2.07 16 21 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 22 N -0.86 -25.38 13.67 55.48 0.76 -24.62 16 23 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 27 C -0.19 -4.20 8.60 -39.19 -0.34 -4.54 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.79 6.78 -51.93 -0.35 0.44 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.44 7.83 -51.93 -0.41 0.04 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.10 1.37 6.15 -51.93 -0.32 1.06 16 37 H 0.42 5.53 8.30 -40.82 -0.34 5.19 16 38 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.13 2.76 5.71 -52.49 -0.30 2.46 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.13 3.04 6.45 -52.49 -0.34 2.71 16 LS Contribution 350.59 15.07 5.28 5.28 Total: -1.00 -32.80 350.59 -7.17 -39.97 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.27 Total: 8.54 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -2.50 Total: -4.64 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.20 Total: -42.51 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: 0.15 Total: -22.11 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.80 -7.17 -39.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267657993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.962 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds