Wall clock time and date at job start Tue Mar 31 2020 12:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.99707 * 2 1 4 4 C 1.54322 * 109.88256 * 121.09255 * 2 1 3 5 5 C 1.55161 * 102.94331 * 97.22538 * 4 2 1 6 6 C 1.54905 * 101.57891 * 35.49985 * 5 4 2 7 7 N 1.47283 * 109.85838 * 238.92873 * 2 1 3 8 8 C 1.34777 * 125.79239 * 59.49987 * 7 2 1 9 9 O 1.21354 * 120.00180 * 0.02562 * 8 7 2 10 10 C 1.49358 * 120.00166 * 180.02562 * 8 7 2 11 11 O 1.21380 * 119.99833 * 0.02562 * 10 8 7 12 12 N 1.34777 * 120.00166 * 180.02562 * 10 8 7 13 13 C 1.39715 * 120.00030 * 174.79194 * 12 10 8 14 14 C 1.39018 * 120.04468 * 146.39054 * 13 12 10 15 15 C 1.38146 * 120.06400 * 179.97438 * 14 13 12 16 16 C 1.38182 * 120.14207 * 359.97438 * 15 14 13 17 17 C 1.38918 * 120.08199 * 359.97438 * 16 15 14 18 18 O 1.35755 * 120.02623 * 180.02562 * 17 16 15 19 19 C 1.34824 * 117.00331 * 5.91051 * 18 17 16 20 20 H 1.08004 * 120.00047 * 5.40644 * 19 18 17 21 21 C 1.38657 * 120.00322 * 185.40821 * 19 18 17 22 22 N 1.31560 * 119.99538 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00087 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47096 * 59.99648 * 23 21 19 25 25 H 1.48503 * 109.47047 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47107 * 299.99525 * 23 21 19 27 27 C 1.38756 * 119.94207 * 359.79363 * 17 16 15 28 28 H 1.09002 * 109.47208 * 298.90094 * 1 2 3 29 29 H 1.08995 * 109.47434 * 58.90636 * 1 2 3 30 30 H 1.09007 * 109.47192 * 178.90821 * 1 2 3 31 31 H 1.09004 * 110.72270 * 338.86075 * 4 2 1 32 32 H 1.08996 * 110.72342 * 215.58854 * 4 2 1 33 33 H 1.08998 * 111.00273 * 277.42651 * 5 4 2 34 34 H 1.09001 * 111.03668 * 153.59029 * 5 4 2 35 35 H 1.09001 * 110.36902 * 81.82924 * 6 5 4 36 36 H 1.09006 * 110.36804 * 204.04239 * 6 5 4 37 37 H 0.96996 * 119.99517 * 354.78789 * 12 10 8 38 38 H 1.08006 * 119.96832 * 359.97438 * 14 13 12 39 39 H 1.07995 * 119.92377 * 179.97438 * 15 14 13 40 40 H 1.07995 * 119.95286 * 180.02562 * 16 15 14 41 41 H 0.96998 * 119.99470 * 179.97438 * 22 21 19 42 42 H 1.07999 * 120.07855 * 180.24828 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2427 5 6 2.3519 -2.1695 0.6925 6 6 2.8568 -1.8498 -0.7366 7 7 2.0303 -0.7149 -1.1865 8 6 1.7762 -0.3880 -2.4691 9 8 1.0792 0.5722 -2.7239 10 6 2.3524 -1.2075 -3.5769 11 8 3.0492 -2.1681 -3.3221 12 7 2.0988 -0.8803 -4.8595 13 6 2.7241 -1.5787 -5.8955 14 6 2.0545 -1.7914 -7.0950 15 6 2.6726 -2.4814 -8.1198 16 6 3.9579 -2.9619 -7.9564 17 6 4.6330 -2.7518 -6.7606 18 8 5.8958 -3.2239 -6.6015 19 6 6.4823 -3.7793 -7.6810 20 1 5.9837 -3.7551 -8.6388 21 6 7.7255 -4.3815 -7.5617 22 7 8.3330 -4.4106 -6.3951 23 14 8.5383 -5.1504 -9.0575 24 1 8.7413 -4.1117 -10.0992 25 1 9.8518 -5.7231 -8.6675 26 1 7.6683 -6.2271 -9.5950 27 6 4.0172 -2.0550 -5.7308 28 1 -0.3634 0.4967 0.8997 29 1 -0.3634 0.5307 -0.8800 30 1 -0.3634 -1.0275 -0.0196 31 1 1.2918 -0.7889 2.0202 32 1 2.9656 -0.2831 1.6183 33 1 1.4452 -2.7736 0.6606 34 1 3.1268 -2.6624 1.2796 35 1 3.9091 -1.5667 -0.7128 36 1 2.7105 -2.7088 -1.3917 37 1 1.4820 -0.1599 -5.0633 38 1 1.0499 -1.4167 -7.2259 39 1 2.1501 -2.6457 -9.0505 40 1 4.4383 -3.5006 -8.7597 41 1 9.2026 -4.8323 -6.3115 42 1 4.5415 -1.8870 -4.8017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267657993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:49 Heat of formation + Delta-G solvation = -78.502361 kcal Electronic energy + Delta-G solvation = -26180.867035 eV Core-core repulsion = 22319.284191 eV Total energy + Delta-G solvation = -3861.582843 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.29334 -41.00315 -40.09652 -38.74605 -38.28505 -35.72431 -34.27049 -33.00394 -32.14586 -31.31728 -30.28164 -27.42558 -26.93728 -26.49691 -24.18790 -23.40710 -22.75220 -21.78810 -20.66315 -20.02429 -19.27413 -18.69683 -18.06433 -17.46700 -17.05509 -16.79461 -16.74955 -16.13099 -16.00924 -15.79899 -15.51754 -15.20250 -14.88234 -14.52231 -14.39731 -14.30632 -14.13574 -13.60703 -13.58196 -13.36408 -13.26138 -13.07933 -12.98037 -12.68228 -12.64095 -12.39313 -12.15937 -12.01331 -11.73570 -11.56998 -11.45114 -11.32272 -10.77136 -10.62914 -9.96528 -9.42400 -8.95137 -8.46740 -6.16246 -0.07614 0.59785 0.68092 1.06472 1.35818 1.47217 1.52757 1.96271 2.16313 2.29571 2.79890 3.04747 3.15461 3.51798 3.56853 3.62339 3.96311 4.08407 4.15513 4.29607 4.32467 4.36114 4.40381 4.54517 4.56853 4.66674 4.77817 4.83218 4.92447 4.93557 5.01053 5.07009 5.09687 5.15895 5.21037 5.28809 5.32789 5.37592 5.59072 5.69386 5.90858 6.01570 6.07789 6.12772 6.54494 6.78384 6.96935 7.77463 8.76586 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018464 B = 0.002987 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.126782 B = 9370.757102 C =10655.322652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 H 0.079 0.921 4 C -0.118 4.118 5 C -0.125 4.125 6 C 0.084 3.916 7 N -0.583 5.583 8 C 0.528 3.472 9 O -0.534 6.534 10 C 0.498 3.502 11 O -0.516 6.516 12 N -0.629 5.629 13 C 0.177 3.823 14 C -0.201 4.201 15 C -0.045 4.045 16 C -0.249 4.249 17 C 0.131 3.869 18 O -0.231 6.231 19 C -0.415 4.415 20 H 0.107 0.893 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.022 2.978 24 H -0.255 1.255 25 H -0.273 1.273 26 H -0.255 1.255 27 C -0.208 4.208 28 H 0.094 0.906 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.433 0.567 38 H 0.162 0.838 39 H 0.163 0.837 40 H 0.127 0.873 41 H 0.273 0.727 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.503 7.251 11.131 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 H 0.098 0.902 4 C -0.155 4.155 5 C -0.163 4.163 6 C -0.038 4.038 7 N -0.316 5.316 8 C 0.310 3.690 9 O -0.412 6.412 10 C 0.280 3.720 11 O -0.390 6.390 12 N -0.276 5.276 13 C 0.084 3.916 14 C -0.221 4.221 15 C -0.064 4.064 16 C -0.268 4.268 17 C 0.079 3.921 18 O -0.138 6.138 19 C -0.491 4.491 20 H 0.124 0.876 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.840 3.160 24 H -0.180 1.180 25 H -0.198 1.198 26 H -0.179 1.179 27 C -0.229 4.229 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.273 0.727 38 H 0.179 0.821 39 H 0.181 0.819 40 H 0.145 0.855 41 H 0.082 0.918 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.063 7.068 11.470 20.965 hybrid contribution 0.699 -0.104 -0.656 0.964 sum -15.364 6.964 10.814 20.038 Atomic orbital electron populations 1.22111 0.93522 1.02558 1.03377 1.22090 0.95725 0.96550 0.83684 0.90245 1.22765 1.03221 0.94265 0.95279 1.22836 1.02889 0.97698 0.92908 1.22817 0.94674 0.88652 0.97646 1.48602 1.48428 1.30497 1.04116 1.19306 0.81893 0.84682 0.83104 1.90724 1.38650 1.28459 1.83409 1.20576 0.81773 0.84977 0.84665 1.90827 1.36916 1.27766 1.83515 1.42961 1.45052 1.36330 1.03300 1.17282 0.89921 0.95655 0.88770 1.20901 1.01627 1.07040 0.92558 1.21048 0.92480 0.93634 0.99201 1.21389 0.98072 1.09247 0.98135 1.19576 0.85439 0.92699 0.94362 1.83965 1.23443 1.68118 1.38237 1.21860 1.02302 1.36865 0.88034 0.87585 1.26676 0.96318 0.97059 1.02127 1.70209 1.16030 1.43483 1.26287 0.84610 0.77310 0.78669 0.75373 1.17960 1.19804 1.17905 1.19994 0.95626 1.07997 0.99294 0.88694 0.93340 0.92315 0.87002 0.89229 0.89955 0.87699 0.91251 0.90215 0.72677 0.82093 0.81943 0.85484 0.91840 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.05 71.98 0.65 -1.80 16 2 C 0.12 2.07 3.51 45.29 0.16 2.23 16 3 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.12 -1.26 6.49 31.78 0.21 -1.05 16 5 C -0.13 -1.72 7.09 31.99 0.23 -1.49 16 6 C 0.08 1.92 6.06 86.85 0.53 2.44 16 7 N -0.58 -14.11 3.09 -789.11 -2.44 -16.55 16 8 C 0.53 15.37 7.70 87.24 0.67 16.04 16 9 O -0.53 -16.14 15.41 -3.26 -0.05 -16.19 16 10 C 0.50 16.72 7.59 87.24 0.66 17.38 16 11 O -0.52 -20.66 11.49 -3.34 -0.04 -20.69 16 12 N -0.63 -19.51 5.32 -304.88 -1.62 -21.13 16 13 C 0.18 6.56 6.26 38.20 0.24 6.80 16 14 C -0.20 -6.14 9.96 22.44 0.22 -5.92 16 15 C -0.05 -1.47 10.03 22.23 0.22 -1.25 16 16 C -0.25 -10.73 9.13 22.42 0.20 -10.53 16 17 C 0.13 6.79 6.64 22.56 0.15 6.94 16 18 O -0.23 -14.47 9.75 -22.73 -0.22 -14.69 16 19 C -0.41 -24.50 9.44 67.92 0.64 -23.86 16 20 H 0.11 5.63 5.29 -2.91 -0.02 5.61 16 21 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 22 N -0.92 -57.90 13.67 21.61 0.30 -57.61 16 23 Si 1.02 43.07 29.55 68.60 2.03 45.10 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 27 C -0.21 -9.85 8.60 22.52 0.19 -9.66 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 1.00 6.78 -2.39 -0.02 0.98 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.11 0.68 7.83 -2.38 -0.02 0.66 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 2.24 6.15 -2.38 -0.01 2.22 16 37 H 0.43 10.59 8.30 -92.71 -0.77 9.82 16 38 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 39 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 40 H 0.13 5.45 5.71 -2.91 -0.02 5.43 16 41 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 42 H 0.10 5.27 6.45 -2.91 -0.02 5.25 16 Total: -1.00 -79.30 350.59 3.70 -75.61 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.30 Total: 30.82 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 5.44 Total: -4.66 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -3.76 Total: -95.29 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -0.31 Total: -51.58 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -79.30 3.70 -75.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267657993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.895 kcal (2) G-P(sol) polarization free energy of solvation -79.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds