Wall clock time and date at job start Tue Mar 31 2020 13:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47015 * 2 1 4 4 C 1.46502 * 120.00015 * 270.00004 * 3 2 1 5 5 C 1.50699 * 109.47026 * 270.00218 * 4 3 2 6 6 H 1.08003 * 119.99904 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99863 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00054 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99693 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.47508 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46786 * 120.00297 * 9 7 5 12 12 H 1.48500 * 109.46656 * 239.99707 * 9 7 5 13 13 C 1.34780 * 120.00144 * 89.99961 * 3 2 1 14 14 O 1.21280 * 120.00169 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99933 * 359.97438 * 13 3 2 16 16 C 1.53003 * 109.47347 * 179.97438 * 15 13 3 17 17 H 1.08995 * 109.44287 * 305.06981 * 16 15 13 18 18 O 1.42936 * 109.43741 * 65.00576 * 16 15 13 19 19 C 1.35996 * 117.00590 * 74.54726 * 18 16 15 20 20 C 1.38437 * 120.44336 * 210.99077 * 19 18 16 21 21 C 1.38298 * 119.92053 * 181.59307 * 20 19 18 22 22 C 1.38285 * 120.22870 * 0.02562 * 21 20 19 23 23 C 1.38263 * 120.17280 * 359.67159 * 22 21 20 24 24 C 1.38512 * 119.88457 * 0.02562 * 23 22 21 25 25 N 1.40160 * 120.64580 * 180.17354 * 24 23 22 26 26 C 1.34956 * 119.23463 * 169.05297 * 25 24 23 27 27 O 1.21302 * 120.14358 * 174.25980 * 26 25 24 28 28 H 1.08998 * 109.47380 * 299.99998 * 1 2 3 29 29 H 1.09002 * 109.47295 * 60.00106 * 1 2 3 30 30 H 1.09004 * 109.47482 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46907 * 240.00116 * 2 1 3 32 32 H 1.08998 * 109.46836 * 119.99805 * 2 1 3 33 33 H 1.09000 * 109.46870 * 30.00134 * 4 3 2 34 34 H 1.08998 * 109.47241 * 149.99792 * 4 3 2 35 35 H 0.96992 * 120.00134 * 180.02562 * 8 7 5 36 36 H 1.09008 * 109.47087 * 60.00098 * 15 13 3 37 37 H 1.09000 * 109.47378 * 300.00543 * 15 13 3 38 38 H 1.08007 * 120.04265 * 1.59276 * 20 19 18 39 39 H 1.07999 * 119.88595 * 180.27891 * 21 20 19 40 40 H 1.07998 * 119.91227 * 179.68864 * 22 21 20 41 41 H 1.07999 * 120.05699 * 179.97438 * 23 22 21 42 42 H 0.97001 * 120.37911 * 349.03052 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1493 2.3905 -2.8775 8 7 3.3493 3.1266 -3.6176 9 14 5.9137 2.0975 -3.4163 10 1 6.6014 1.2423 -2.4159 11 1 5.9216 1.4190 -4.7373 12 1 6.6209 3.3989 -3.5241 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9912 1.3064 2.4723 16 6 2.3233 2.2435 3.6353 17 1 3.3449 2.6078 3.5273 18 8 1.4197 3.3510 3.6267 19 6 0.1491 3.1145 4.0499 20 6 -0.9107 3.8334 3.5240 21 6 -2.1945 3.6072 3.9858 22 6 -2.4237 2.6654 4.9721 23 6 -1.3710 1.9392 5.4977 24 6 -0.0837 2.1565 5.0350 25 7 0.9947 1.4269 5.5540 26 6 2.1937 1.4950 4.9383 27 8 3.1624 0.9553 5.4300 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5816 1.6877 -2.0284 34 1 2.0954 3.1410 -1.1384 35 1 3.6753 3.5171 -4.4435 36 1 2.6211 0.4187 2.5302 37 1 0.9431 1.0126 2.5298 38 1 -0.7351 4.5700 2.7538 39 1 -3.0214 4.1651 3.5719 40 1 -3.4276 2.4965 5.3326 41 1 -1.5521 1.2045 6.2682 42 1 0.8805 0.8796 6.3466 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267736202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:12 Heat of formation + Delta-G solvation = -75.332032 kcal Electronic energy + Delta-G solvation = -27217.724636 eV Core-core repulsion = 23356.279268 eV Total energy + Delta-G solvation = -3861.445368 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.76070 -39.16035 -38.96404 -37.52650 -35.37040 -35.25845 -32.92948 -32.00667 -30.53677 -30.11441 -29.30535 -27.38131 -25.41702 -23.75069 -23.05979 -23.02497 -22.41108 -19.62990 -19.23241 -18.33742 -18.08922 -16.65648 -16.58448 -16.34519 -16.05337 -15.81363 -15.29573 -15.16497 -14.82108 -14.39389 -14.20134 -14.06741 -14.01568 -13.42082 -13.29780 -13.05440 -12.81180 -12.46430 -12.25312 -12.03587 -11.84783 -11.59170 -11.40848 -11.30981 -11.12171 -11.04371 -10.90564 -10.74901 -10.54356 -10.19621 -10.12813 -9.61867 -8.96584 -8.87553 -8.43624 -8.11536 -7.68745 -6.04489 -4.09083 0.86312 1.06907 2.08200 2.53526 3.17361 3.30266 3.35269 3.38777 3.43322 3.51297 3.67660 4.00974 4.39368 4.45508 4.55401 4.72438 4.89205 4.97827 5.04595 5.16726 5.17523 5.26859 5.30867 5.47813 5.49998 5.60921 5.63143 5.75651 5.81267 5.96099 6.00171 6.19798 6.23477 6.32261 6.44580 6.46525 6.59297 7.03972 7.23775 7.43955 7.52835 7.55511 7.91987 8.23146 8.37573 8.88982 9.05461 9.56205 11.03624 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017419 B = 0.003728 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.060274 B = 7509.398566 C = 8034.259318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.595 5.595 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.512 3.488 14 O -0.525 6.525 15 C -0.168 4.168 16 C 0.102 3.898 17 H 0.158 0.842 18 O -0.276 6.276 19 C 0.084 3.916 20 C -0.105 4.105 21 C -0.109 4.109 22 C -0.117 4.117 23 C -0.126 4.126 24 C 0.087 3.913 25 N -0.659 5.659 26 C 0.498 3.502 27 O -0.506 6.506 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.627 -5.216 17.067 22.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.298 3.702 14 O -0.401 6.401 15 C -0.209 4.209 16 C 0.042 3.958 17 H 0.175 0.825 18 O -0.189 6.189 19 C 0.037 3.963 20 C -0.124 4.124 21 C -0.128 4.128 22 C -0.136 4.136 23 C -0.147 4.147 24 C -0.009 4.009 25 N -0.306 5.306 26 C 0.285 3.715 27 O -0.380 6.380 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.127 0.873 37 H 0.113 0.887 38 H 0.159 0.841 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -12.674 -4.540 16.921 21.623 hybrid contribution 0.816 -0.784 0.047 1.133 sum -11.857 -5.324 16.967 21.374 Atomic orbital electron populations 1.22216 0.96769 1.01403 1.02306 1.21430 0.93530 0.84286 1.02691 1.48217 1.63739 1.13176 1.07607 1.19283 0.96286 0.93673 0.77921 1.21477 0.96906 1.31858 1.06269 0.92402 1.24929 0.97834 0.94897 0.96397 1.69938 1.35595 1.33477 1.14335 0.86453 0.84670 0.78082 0.78291 1.19794 1.20996 1.20857 1.19721 0.79157 0.86905 0.84453 1.90719 1.45166 1.17400 1.86807 1.22327 1.04440 0.99994 0.94128 1.22664 0.96882 0.86469 0.89808 0.82487 1.86496 1.16920 1.33331 1.82187 1.18769 0.86082 0.96869 0.94593 1.20685 0.90073 1.01349 1.00322 1.21027 0.96118 0.98459 0.97217 1.20929 0.98610 0.96550 0.97483 1.20565 0.89970 1.01983 1.02182 1.18067 0.88586 0.96487 0.97726 1.43690 1.08964 1.47306 1.30625 1.21525 0.82290 0.80408 0.87286 1.90806 1.36377 1.45414 1.65405 0.93263 0.91881 0.92170 0.89754 0.91959 0.95003 0.93765 0.92779 0.87272 0.88651 0.84065 0.84939 0.85253 0.85220 0.74781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.10 1.65 5.93 -4.04 -0.02 1.62 16 3 N -0.60 -12.29 2.46 -175.07 -0.43 -12.72 16 4 C 0.25 6.36 5.16 -5.19 -0.03 6.34 16 5 C -0.53 -14.80 9.39 -34.44 -0.32 -15.13 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 9 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.51 10.38 7.55 -10.99 -0.08 10.30 16 14 O -0.52 -12.82 15.00 -8.90 -0.13 -12.96 16 15 C -0.17 -2.52 3.77 -27.88 -0.11 -2.62 16 16 C 0.10 1.54 2.74 -27.82 -0.08 1.46 16 17 H 0.16 2.51 7.95 -51.93 -0.41 2.09 16 18 O -0.28 -4.41 9.38 -34.19 -0.32 -4.73 16 19 C 0.08 1.11 5.84 -39.09 -0.23 0.88 16 20 C -0.11 -1.23 9.99 -39.49 -0.39 -1.62 16 21 C -0.11 -0.96 10.04 -39.54 -0.40 -1.36 16 22 C -0.12 -0.89 10.04 -39.55 -0.40 -1.29 16 23 C -0.13 -1.04 9.93 -39.47 -0.39 -1.43 16 24 C 0.09 0.95 6.57 -83.53 -0.55 0.40 16 25 N -0.66 -7.10 5.46 -9.69 -0.05 -7.15 16 26 C 0.50 6.84 7.19 -10.84 -0.08 6.76 16 27 O -0.51 -8.18 17.95 5.54 0.10 -8.08 16 28 H 0.05 0.62 7.22 -51.93 -0.37 0.25 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 32 H 0.06 0.82 6.44 -51.93 -0.33 0.49 16 33 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.11 1.46 7.40 -51.92 -0.38 1.08 16 37 H 0.10 1.27 6.77 -51.93 -0.35 0.91 16 38 H 0.14 1.68 8.06 -52.48 -0.42 1.25 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.41 3.38 8.87 -40.82 -0.36 3.02 16 LS Contribution 357.09 15.07 5.38 5.38 Total: -1.00 -34.71 357.09 -8.06 -42.77 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.53 Total: 2.20 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -2.79 Total: 4.13 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.25 Total: -45.56 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.35 Total: -25.76 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.71 -8.06 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267736202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.560 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds