Wall clock time and date at job start Tue Mar 31 2020 13:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47015 * 2 1 4 4 C 1.46502 * 120.00015 * 270.00004 * 3 2 1 5 5 C 1.50699 * 109.47026 * 270.00218 * 4 3 2 6 6 H 1.08003 * 119.99904 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99863 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00054 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99693 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.47508 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46786 * 120.00297 * 9 7 5 12 12 H 1.48500 * 109.46656 * 239.99707 * 9 7 5 13 13 C 1.34780 * 120.00144 * 89.99961 * 3 2 1 14 14 O 1.21280 * 120.00169 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99933 * 359.97438 * 13 3 2 16 16 C 1.53003 * 109.47347 * 179.97438 * 15 13 3 17 17 H 1.08995 * 109.44287 * 305.06981 * 16 15 13 18 18 O 1.42936 * 109.43741 * 65.00576 * 16 15 13 19 19 C 1.35996 * 117.00590 * 74.54726 * 18 16 15 20 20 C 1.38437 * 120.44336 * 210.99077 * 19 18 16 21 21 C 1.38298 * 119.92053 * 181.59307 * 20 19 18 22 22 C 1.38285 * 120.22870 * 0.02562 * 21 20 19 23 23 C 1.38263 * 120.17280 * 359.67159 * 22 21 20 24 24 C 1.38512 * 119.88457 * 0.02562 * 23 22 21 25 25 N 1.40160 * 120.64580 * 180.17354 * 24 23 22 26 26 C 1.34956 * 119.23463 * 169.05297 * 25 24 23 27 27 O 1.21302 * 120.14358 * 174.25980 * 26 25 24 28 28 H 1.08998 * 109.47380 * 299.99998 * 1 2 3 29 29 H 1.09002 * 109.47295 * 60.00106 * 1 2 3 30 30 H 1.09004 * 109.47482 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46907 * 240.00116 * 2 1 3 32 32 H 1.08998 * 109.46836 * 119.99805 * 2 1 3 33 33 H 1.09000 * 109.46870 * 30.00134 * 4 3 2 34 34 H 1.08998 * 109.47241 * 149.99792 * 4 3 2 35 35 H 0.96992 * 120.00134 * 180.02562 * 8 7 5 36 36 H 1.09008 * 109.47087 * 60.00098 * 15 13 3 37 37 H 1.09000 * 109.47378 * 300.00543 * 15 13 3 38 38 H 1.08007 * 120.04265 * 1.59276 * 20 19 18 39 39 H 1.07999 * 119.88595 * 180.27891 * 21 20 19 40 40 H 1.07998 * 119.91227 * 179.68864 * 22 21 20 41 41 H 1.07999 * 120.05699 * 179.97438 * 23 22 21 42 42 H 0.97001 * 120.37911 * 349.03052 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1493 2.3905 -2.8775 8 7 3.3493 3.1266 -3.6176 9 14 5.9137 2.0975 -3.4163 10 1 6.6014 1.2423 -2.4159 11 1 5.9216 1.4190 -4.7373 12 1 6.6209 3.3989 -3.5241 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9912 1.3064 2.4723 16 6 2.3233 2.2435 3.6353 17 1 3.3449 2.6078 3.5273 18 8 1.4197 3.3510 3.6267 19 6 0.1491 3.1145 4.0499 20 6 -0.9107 3.8334 3.5240 21 6 -2.1945 3.6072 3.9858 22 6 -2.4237 2.6654 4.9721 23 6 -1.3710 1.9392 5.4977 24 6 -0.0837 2.1565 5.0350 25 7 0.9947 1.4269 5.5540 26 6 2.1937 1.4950 4.9383 27 8 3.1624 0.9553 5.4300 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5816 1.6877 -2.0284 34 1 2.0954 3.1410 -1.1384 35 1 3.6753 3.5171 -4.4435 36 1 2.6211 0.4187 2.5302 37 1 0.9431 1.0126 2.5298 38 1 -0.7351 4.5700 2.7538 39 1 -3.0214 4.1651 3.5719 40 1 -3.4276 2.4965 5.3326 41 1 -1.5521 1.2045 6.2682 42 1 0.8805 0.8796 6.3466 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267736202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:11 Heat of formation + Delta-G solvation = -98.802355 kcal Electronic energy + Delta-G solvation = -27218.742385 eV Core-core repulsion = 23356.279268 eV Total energy + Delta-G solvation = -3862.463117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.77220 -40.67607 -39.98763 -38.54190 -36.96430 -36.23108 -34.96404 -33.31016 -31.61577 -31.32645 -30.23792 -29.13348 -26.87388 -24.80785 -24.58829 -23.99987 -23.75625 -20.62035 -20.33767 -19.73954 -19.01802 -18.61701 -17.94302 -17.78134 -17.16742 -16.97530 -16.70147 -16.26508 -16.06480 -15.84117 -15.52444 -15.20774 -14.85340 -14.73515 -14.48362 -14.44619 -14.17367 -13.73548 -13.59441 -13.32634 -13.19135 -13.00497 -12.96489 -12.69753 -12.54668 -12.24709 -12.20047 -12.16077 -11.91761 -11.88258 -11.68812 -11.27163 -10.65108 -10.64280 -9.66252 -9.45978 -8.97503 -8.22667 -6.37093 0.02301 0.30312 1.08439 1.35800 1.38583 1.50039 1.58341 1.76903 2.20372 2.25945 2.41352 2.75702 2.83978 3.07159 3.31678 3.56914 3.68109 3.82370 4.03613 4.10108 4.24098 4.31386 4.37415 4.38611 4.41621 4.56072 4.62214 4.82581 4.91857 4.95921 5.04133 5.05772 5.22450 5.23596 5.35983 5.47446 5.54634 5.57541 5.69009 5.75582 5.84325 6.06424 6.30092 6.62795 6.68332 6.76256 7.27324 7.44354 8.84658 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017419 B = 0.003728 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.060274 B = 7509.398566 C = 8034.259318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.601 5.601 4 C 0.264 3.736 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.268 1.268 11 H -0.268 1.268 12 H -0.282 1.282 13 C 0.505 3.495 14 O -0.578 6.578 15 C -0.148 4.148 16 C 0.098 3.902 17 H 0.136 0.864 18 O -0.306 6.306 19 C 0.048 3.952 20 C -0.128 4.128 21 C -0.103 4.103 22 C -0.105 4.105 23 C -0.111 4.111 24 C 0.075 3.925 25 N -0.640 5.640 26 C 0.508 3.492 27 O -0.535 6.535 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.023 0.977 34 H -0.003 1.003 35 H 0.267 0.733 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.156 0.844 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.607 -7.737 19.074 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.026 4.026 3 N -0.332 5.332 4 C 0.143 3.857 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.192 1.192 11 H -0.193 1.193 12 H -0.208 1.208 13 C 0.293 3.707 14 O -0.458 6.458 15 C -0.188 4.188 16 C 0.037 3.963 17 H 0.153 0.847 18 O -0.221 6.221 19 C 0.002 3.998 20 C -0.147 4.147 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.131 4.131 24 C -0.020 4.020 25 N -0.288 5.288 26 C 0.294 3.706 27 O -0.412 6.412 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.041 0.959 34 H 0.016 0.984 35 H 0.076 0.924 36 H 0.149 0.851 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.174 0.826 40 H 0.186 0.814 41 H 0.184 0.816 42 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -14.720 -7.107 18.956 25.031 hybrid contribution 1.247 0.077 -0.550 1.365 sum -13.473 -7.031 18.406 23.869 Atomic orbital electron populations 1.22137 0.94452 1.03542 1.01605 1.21778 0.95436 0.81394 1.03955 1.48228 1.63872 1.15036 1.06097 1.18702 0.95277 0.91538 0.80177 1.21749 0.97895 1.31952 1.06527 0.92873 1.25830 1.02268 0.94464 0.96444 1.70052 1.37647 1.34213 1.14818 0.85390 0.79150 0.77986 0.78416 1.19206 1.19336 1.20838 1.20596 0.77746 0.86482 0.85889 1.90686 1.47414 1.19973 1.87746 1.22182 1.06229 0.99782 0.90602 1.22512 0.96136 0.86657 0.90946 0.84698 1.86452 1.18527 1.34044 1.83064 1.19099 0.85141 0.99034 0.96498 1.20778 0.91408 1.01663 1.00901 1.21360 0.95204 0.98555 0.97039 1.21413 1.00240 0.94764 0.95888 1.21020 0.88464 1.01818 1.01816 1.18173 0.89575 0.96394 0.97818 1.43445 1.07931 1.46785 1.30599 1.21068 0.82882 0.79850 0.86788 1.90794 1.37468 1.46820 1.66071 0.92577 0.93995 0.88486 0.90605 0.88558 0.95870 0.98449 0.92413 0.85072 0.86264 0.86014 0.82613 0.81390 0.81590 0.72899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 10.24 71.98 0.74 -3.15 16 2 C 0.10 2.93 5.93 86.38 0.51 3.45 16 3 N -0.60 -25.59 2.46 -826.17 -2.03 -27.62 16 4 C 0.26 14.38 5.16 85.63 0.44 14.82 16 5 C -0.54 -31.61 9.39 25.60 0.24 -31.37 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.52 5.46 84.66 0.46 0.98 16 8 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 9 Si 0.97 45.52 29.54 68.60 2.03 47.55 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 13 C 0.51 21.31 7.55 87.66 0.66 21.97 16 14 O -0.58 -30.38 15.00 10.80 0.16 -30.22 16 15 C -0.15 -4.39 3.77 29.85 0.11 -4.27 16 16 C 0.10 3.06 2.74 29.89 0.08 3.14 16 17 H 0.14 4.69 7.95 -2.39 -0.02 4.67 16 18 O -0.31 -10.36 9.38 -79.68 -0.75 -11.10 16 19 C 0.05 1.28 5.84 22.59 0.13 1.41 16 20 C -0.13 -3.01 9.99 22.33 0.22 -2.79 16 21 C -0.10 -1.54 10.04 22.30 0.22 -1.32 16 22 C -0.10 -1.10 10.04 22.29 0.22 -0.88 16 23 C -0.11 -1.32 9.93 22.34 0.22 -1.10 16 24 C 0.08 1.47 6.57 38.15 0.25 1.72 16 25 N -0.64 -12.39 5.46 -302.84 -1.65 -14.05 16 26 C 0.51 13.63 7.19 87.67 0.63 14.26 16 27 O -0.54 -17.04 17.95 -3.10 -0.06 -17.09 16 28 H 0.06 1.29 7.22 -2.39 -0.02 1.27 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 2.44 8.07 -2.39 -0.02 2.42 16 32 H 0.10 2.28 6.44 -2.39 -0.02 2.26 16 33 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 34 H 0.00 -0.17 7.42 -2.39 -0.02 -0.18 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.13 3.30 7.40 -2.38 -0.02 3.28 16 37 H 0.12 2.96 6.77 -2.39 -0.02 2.94 16 38 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16 41 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 42 H 0.43 5.66 8.87 -92.71 -0.82 4.84 16 Total: -1.00 -81.47 357.09 3.37 -78.10 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.23 Total: 13.81 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 5.16 Total: 16.87 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -3.40 Total: -97.91 kcal Atomic # 8 Polarization: -57.78 SS G_CDS: -0.64 Total: -58.42 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -81.47 3.37 -78.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267736202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.702 kcal (2) G-P(sol) polarization free energy of solvation -81.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds