Wall clock time and date at job start Tue Mar 31 2020 13:11:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46499 * 109.47015 * 2 1
4 4 C 1.46502 * 120.00015 * 270.00004 * 3 2 1
5 5 C 1.50699 * 109.47026 * 270.00218 * 4 3 2
6 6 H 1.08003 * 119.99904 * 359.97438 * 5 4 3
7 7 C 1.37881 * 119.99863 * 180.02562 * 5 4 3
8 8 N 1.31516 * 120.00054 * 359.97438 * 7 5 4
9 9 Si 1.86799 * 119.99693 * 179.97438 * 7 5 4
10 10 H 1.48491 * 109.47508 * 359.97438 * 9 7 5
11 11 H 1.48500 * 109.46786 * 120.00297 * 9 7 5
12 12 H 1.48500 * 109.46656 * 239.99707 * 9 7 5
13 13 C 1.34780 * 120.00144 * 89.99961 * 3 2 1
14 14 O 1.21280 * 120.00169 * 180.02562 * 13 3 2
15 15 C 1.50697 * 119.99933 * 359.97438 * 13 3 2
16 16 C 1.53003 * 109.47347 * 179.97438 * 15 13 3
17 17 H 1.08995 * 109.44287 * 305.06981 * 16 15 13
18 18 O 1.42936 * 109.43741 * 65.00576 * 16 15 13
19 19 C 1.35996 * 117.00590 * 74.54726 * 18 16 15
20 20 C 1.38437 * 120.44336 * 210.99077 * 19 18 16
21 21 C 1.38298 * 119.92053 * 181.59307 * 20 19 18
22 22 C 1.38285 * 120.22870 * 0.02562 * 21 20 19
23 23 C 1.38263 * 120.17280 * 359.67159 * 22 21 20
24 24 C 1.38512 * 119.88457 * 0.02562 * 23 22 21
25 25 N 1.40160 * 120.64580 * 180.17354 * 24 23 22
26 26 C 1.34956 * 119.23463 * 169.05297 * 25 24 23
27 27 O 1.21302 * 120.14358 * 174.25980 * 26 25 24
28 28 H 1.08998 * 109.47380 * 299.99998 * 1 2 3
29 29 H 1.09002 * 109.47295 * 60.00106 * 1 2 3
30 30 H 1.09004 * 109.47482 * 179.97438 * 1 2 3
31 31 H 1.08994 * 109.46907 * 240.00116 * 2 1 3
32 32 H 1.08998 * 109.46836 * 119.99805 * 2 1 3
33 33 H 1.09000 * 109.46870 * 30.00134 * 4 3 2
34 34 H 1.08998 * 109.47241 * 149.99792 * 4 3 2
35 35 H 0.96992 * 120.00134 * 180.02562 * 8 7 5
36 36 H 1.09008 * 109.47087 * 60.00098 * 15 13 3
37 37 H 1.09000 * 109.47378 * 300.00543 * 15 13 3
38 38 H 1.08007 * 120.04265 * 1.59276 * 20 19 18
39 39 H 1.07999 * 119.88595 * 180.27891 * 21 20 19
40 40 H 1.07998 * 119.91227 * 179.68864 * 22 21 20
41 41 H 1.07999 * 120.05699 * 179.97438 * 23 22 21
42 42 H 0.97001 * 120.37911 * 349.03052 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2624 2.0718 -1.2687
5 6 3.6857 1.8350 -1.7038
6 1 4.3428 1.2308 -1.0958
7 6 4.1493 2.3905 -2.8775
8 7 3.3493 3.1266 -3.6176
9 14 5.9137 2.0975 -3.4163
10 1 6.6014 1.2423 -2.4159
11 1 5.9216 1.4190 -4.7373
12 1 6.6209 3.3989 -3.5241
13 6 2.2429 2.0166 1.1672
14 8 2.6467 3.1602 1.1672
15 6 1.9912 1.3064 2.4723
16 6 2.3233 2.2435 3.6353
17 1 3.3449 2.6078 3.5273
18 8 1.4197 3.3510 3.6267
19 6 0.1491 3.1145 4.0499
20 6 -0.9107 3.8334 3.5240
21 6 -2.1945 3.6072 3.9858
22 6 -2.4237 2.6654 4.9721
23 6 -1.3710 1.9392 5.4977
24 6 -0.0837 2.1565 5.0350
25 7 0.9947 1.4269 5.5540
26 6 2.1937 1.4950 4.9383
27 8 3.1624 0.9553 5.4300
28 1 -0.3634 0.5138 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8900
33 1 1.5816 1.6877 -2.0284
34 1 2.0954 3.1410 -1.1384
35 1 3.6753 3.5171 -4.4435
36 1 2.6211 0.4187 2.5302
37 1 0.9431 1.0126 2.5298
38 1 -0.7351 4.5700 2.7538
39 1 -3.0214 4.1651 3.5719
40 1 -3.4276 2.4965 5.3326
41 1 -1.5521 1.2045 6.2682
42 1 0.8805 0.8796 6.3466
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000267736202.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:11:11
Heat of formation + Delta-G solvation = -98.802355 kcal
Electronic energy + Delta-G solvation = -27218.742385 eV
Core-core repulsion = 23356.279268 eV
Total energy + Delta-G solvation = -3862.463117 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 318.141 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-42.77220 -40.67607 -39.98763 -38.54190 -36.96430 -36.23108 -34.96404 -33.31016
-31.61577 -31.32645 -30.23792 -29.13348 -26.87388 -24.80785 -24.58829 -23.99987
-23.75625 -20.62035 -20.33767 -19.73954 -19.01802 -18.61701 -17.94302 -17.78134
-17.16742 -16.97530 -16.70147 -16.26508 -16.06480 -15.84117 -15.52444 -15.20774
-14.85340 -14.73515 -14.48362 -14.44619 -14.17367 -13.73548 -13.59441 -13.32634
-13.19135 -13.00497 -12.96489 -12.69753 -12.54668 -12.24709 -12.20047 -12.16077
-11.91761 -11.88258 -11.68812 -11.27163 -10.65108 -10.64280 -9.66252 -9.45978
-8.97503 -8.22667 -6.37093 0.02301 0.30312 1.08439 1.35800 1.38583
1.50039 1.58341 1.76903 2.20372 2.25945 2.41352 2.75702 2.83978
3.07159 3.31678 3.56914 3.68109 3.82370 4.03613 4.10108 4.24098
4.31386 4.37415 4.38611 4.41621 4.56072 4.62214 4.82581 4.91857
4.95921 5.04133 5.05772 5.22450 5.23596 5.35983 5.47446 5.54634
5.57541 5.69009 5.75582 5.84325 6.06424 6.30092 6.62795 6.68332
6.76256 7.27324 7.44354 8.84658
Molecular weight = 318.14amu
Principal moments of inertia in cm(-1)
A = 0.017419 B = 0.003728 C = 0.003484
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1607.060274 B = 7509.398566 C = 8034.259318
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.097 3.903
3 N -0.601 5.601
4 C 0.264 3.736
5 C -0.543 4.543
6 H 0.053 0.947
7 C 0.009 3.991
8 N -0.927 5.927
9 Si 0.966 3.034
10 H -0.268 1.268
11 H -0.268 1.268
12 H -0.282 1.282
13 C 0.505 3.495
14 O -0.578 6.578
15 C -0.148 4.148
16 C 0.098 3.902
17 H 0.136 0.864
18 O -0.306 6.306
19 C 0.048 3.952
20 C -0.128 4.128
21 C -0.103 4.103
22 C -0.105 4.105
23 C -0.111 4.111
24 C 0.075 3.925
25 N -0.640 5.640
26 C 0.508 3.492
27 O -0.535 6.535
28 H 0.055 0.945
29 H 0.041 0.959
30 H 0.096 0.904
31 H 0.075 0.925
32 H 0.096 0.904
33 H 0.023 0.977
34 H -0.003 1.003
35 H 0.267 0.733
36 H 0.131 0.869
37 H 0.119 0.881
38 H 0.122 0.878
39 H 0.156 0.844
40 H 0.169 0.831
41 H 0.167 0.833
42 H 0.429 0.571
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.607 -7.737 19.074 25.832
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C -0.026 4.026
3 N -0.332 5.332
4 C 0.143 3.857
5 C -0.581 4.581
6 H 0.071 0.929
7 C -0.190 4.190
8 N -0.567 5.567
9 Si 0.791 3.209
10 H -0.192 1.192
11 H -0.193 1.193
12 H -0.208 1.208
13 C 0.293 3.707
14 O -0.458 6.458
15 C -0.188 4.188
16 C 0.037 3.963
17 H 0.153 0.847
18 O -0.221 6.221
19 C 0.002 3.998
20 C -0.147 4.147
21 C -0.122 4.122
22 C -0.123 4.123
23 C -0.131 4.131
24 C -0.020 4.020
25 N -0.288 5.288
26 C 0.294 3.706
27 O -0.412 6.412
28 H 0.074 0.926
29 H 0.060 0.940
30 H 0.115 0.885
31 H 0.094 0.906
32 H 0.114 0.886
33 H 0.041 0.959
34 H 0.016 0.984
35 H 0.076 0.924
36 H 0.149 0.851
37 H 0.137 0.863
38 H 0.140 0.860
39 H 0.174 0.826
40 H 0.186 0.814
41 H 0.184 0.816
42 H 0.271 0.729
Dipole moment (debyes) X Y Z Total
from point charges -14.720 -7.107 18.956 25.031
hybrid contribution 1.247 0.077 -0.550 1.365
sum -13.473 -7.031 18.406 23.869
Atomic orbital electron populations
1.22137 0.94452 1.03542 1.01605 1.21778 0.95436 0.81394 1.03955
1.48228 1.63872 1.15036 1.06097 1.18702 0.95277 0.91538 0.80177
1.21749 0.97895 1.31952 1.06527 0.92873 1.25830 1.02268 0.94464
0.96444 1.70052 1.37647 1.34213 1.14818 0.85390 0.79150 0.77986
0.78416 1.19206 1.19336 1.20838 1.20596 0.77746 0.86482 0.85889
1.90686 1.47414 1.19973 1.87746 1.22182 1.06229 0.99782 0.90602
1.22512 0.96136 0.86657 0.90946 0.84698 1.86452 1.18527 1.34044
1.83064 1.19099 0.85141 0.99034 0.96498 1.20778 0.91408 1.01663
1.00901 1.21360 0.95204 0.98555 0.97039 1.21413 1.00240 0.94764
0.95888 1.21020 0.88464 1.01818 1.01816 1.18173 0.89575 0.96394
0.97818 1.43445 1.07931 1.46785 1.30599 1.21068 0.82882 0.79850
0.86788 1.90794 1.37468 1.46820 1.66071 0.92577 0.93995 0.88486
0.90605 0.88558 0.95870 0.98449 0.92413 0.85072 0.86264 0.86014
0.82613 0.81390 0.81590 0.72899
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.88 10.24 71.98 0.74 -3.15 16
2 C 0.10 2.93 5.93 86.38 0.51 3.45 16
3 N -0.60 -25.59 2.46 -826.17 -2.03 -27.62 16
4 C 0.26 14.38 5.16 85.63 0.44 14.82 16
5 C -0.54 -31.61 9.39 25.60 0.24 -31.37 16
6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16
7 C 0.01 0.52 5.46 84.66 0.46 0.98 16
8 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16
9 Si 0.97 45.52 29.54 68.60 2.03 47.55 16
10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16
11 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16
12 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16
13 C 0.51 21.31 7.55 87.66 0.66 21.97 16
14 O -0.58 -30.38 15.00 10.80 0.16 -30.22 16
15 C -0.15 -4.39 3.77 29.85 0.11 -4.27 16
16 C 0.10 3.06 2.74 29.89 0.08 3.14 16
17 H 0.14 4.69 7.95 -2.39 -0.02 4.67 16
18 O -0.31 -10.36 9.38 -79.68 -0.75 -11.10 16
19 C 0.05 1.28 5.84 22.59 0.13 1.41 16
20 C -0.13 -3.01 9.99 22.33 0.22 -2.79 16
21 C -0.10 -1.54 10.04 22.30 0.22 -1.32 16
22 C -0.10 -1.10 10.04 22.29 0.22 -0.88 16
23 C -0.11 -1.32 9.93 22.34 0.22 -1.10 16
24 C 0.08 1.47 6.57 38.15 0.25 1.72 16
25 N -0.64 -12.39 5.46 -302.84 -1.65 -14.05 16
26 C 0.51 13.63 7.19 87.67 0.63 14.26 16
27 O -0.54 -17.04 17.95 -3.10 -0.06 -17.09 16
28 H 0.06 1.29 7.22 -2.39 -0.02 1.27 16
29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16
30 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16
31 H 0.08 2.44 8.07 -2.39 -0.02 2.42 16
32 H 0.10 2.28 6.44 -2.39 -0.02 2.26 16
33 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16
34 H 0.00 -0.17 7.42 -2.39 -0.02 -0.18 16
35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16
36 H 0.13 3.30 7.40 -2.38 -0.02 3.28 16
37 H 0.12 2.96 6.77 -2.39 -0.02 2.94 16
38 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16
39 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16
40 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16
41 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16
42 H 0.43 5.66 8.87 -92.71 -0.82 4.84 16
Total: -1.00 -81.47 357.09 3.37 -78.10
By element:
Atomic # 1 Polarization: 13.57 SS G_CDS: 0.23 Total: 13.81 kcal
Atomic # 6 Polarization: 11.71 SS G_CDS: 5.16 Total: 16.87 kcal
Atomic # 7 Polarization: -94.51 SS G_CDS: -3.40 Total: -97.91 kcal
Atomic # 8 Polarization: -57.78 SS G_CDS: -0.64 Total: -58.42 kcal
Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal
Total: -81.47 3.37 -78.10 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000267736202.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.702 kcal
(2) G-P(sol) polarization free energy of solvation -81.474 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.176 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.100 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.802 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds