Wall clock time and date at job start Tue Mar 31 2020 13:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46976 * 2 1 4 4 C 1.46506 * 120.00244 * 270.00142 * 3 2 1 5 5 C 1.50694 * 109.47360 * 270.00431 * 4 3 2 6 6 H 1.08004 * 119.99998 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00103 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00020 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00097 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47219 * 90.00165 * 9 7 5 11 11 H 1.48503 * 109.47044 * 210.00291 * 9 7 5 12 12 H 1.48507 * 109.46999 * 329.99894 * 9 7 5 13 13 C 1.34774 * 119.99955 * 90.00653 * 3 2 1 14 14 O 1.21287 * 119.99908 * 179.97438 * 13 3 2 15 15 C 1.50695 * 119.99942 * 359.97438 * 13 3 2 16 16 C 1.53003 * 109.47357 * 180.02562 * 15 13 3 17 17 H 1.09000 * 109.41519 * 55.07861 * 16 15 13 18 18 O 1.42945 * 109.44125 * 295.17278 * 16 15 13 19 19 C 1.36004 * 116.97210 * 285.49767 * 18 16 15 20 20 C 1.38438 * 120.45405 * 148.74458 * 19 18 16 21 21 C 1.38299 * 119.91091 * 178.13717 * 20 19 18 22 22 C 1.38280 * 120.22997 * 359.87966 * 21 20 19 23 23 C 1.38260 * 120.18035 * 0.45990 * 22 21 20 24 24 C 1.38527 * 119.87494 * 0.30187 * 23 22 21 25 25 N 1.40160 * 120.64559 * 179.60469 * 24 23 22 26 26 C 1.34949 * 119.23170 * 190.40145 * 25 24 23 27 27 O 1.21295 * 120.14330 * 185.58663 * 26 25 24 28 28 H 1.08993 * 109.47368 * 59.99404 * 1 2 3 29 29 H 1.08997 * 109.46918 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46458 * 299.99746 * 1 2 3 31 31 H 1.09007 * 109.47016 * 240.00649 * 2 1 3 32 32 H 1.08998 * 109.47795 * 120.00476 * 2 1 3 33 33 H 1.09005 * 109.46562 * 30.00504 * 4 3 2 34 34 H 1.08998 * 109.47300 * 149.99919 * 4 3 2 35 35 H 0.97006 * 120.00405 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47415 * 60.00560 * 15 13 3 37 37 H 1.09003 * 109.47257 * 300.00389 * 15 13 3 38 38 H 1.08005 * 120.04857 * 358.16080 * 20 19 18 39 39 H 1.08000 * 119.88604 * 179.85896 * 21 20 19 40 40 H 1.08006 * 119.90908 * 180.43838 * 22 21 20 41 41 H 1.08001 * 120.06894 * 180.32235 * 23 22 21 42 42 H 0.96997 * 120.38062 * 10.42774 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6856 1.8352 -1.7039 6 1 4.3428 1.2309 -1.0960 7 6 4.1489 2.3898 -2.8780 8 7 3.3489 3.1259 -3.6181 9 14 5.9133 2.0969 -3.4171 10 1 5.9773 0.8756 -4.2594 11 1 6.3918 3.2642 -4.2005 12 1 6.7734 1.9181 -2.2198 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9915 1.3063 2.4722 16 6 2.3225 2.2437 3.6352 17 1 1.7554 3.1684 3.5280 18 8 3.7210 2.5395 3.6247 19 6 4.5624 1.5572 4.0453 20 6 5.8359 1.4489 3.5135 21 6 6.6958 0.4698 3.9769 22 6 6.2888 -0.4002 4.9718 23 6 5.0160 -0.3024 5.5027 24 6 4.1444 0.6659 5.0318 25 7 2.8477 0.7741 5.5527 26 6 1.9552 1.5776 4.9372 27 8 0.8620 1.7629 5.4288 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8935 -0.5139 0.8899 33 1 1.5815 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1384 35 1 3.6748 3.5165 -4.4440 36 1 2.6214 0.4186 2.5301 37 1 0.9434 1.0124 2.5299 38 1 6.1578 2.1283 2.7381 39 1 7.6885 0.3842 3.5602 40 1 6.9671 -1.1583 5.3348 41 1 4.7018 -0.9795 6.2832 42 1 2.5949 0.2774 6.3466 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267736204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:15 Heat of formation + Delta-G solvation = -75.204022 kcal Electronic energy + Delta-G solvation = -27314.672861 eV Core-core repulsion = 23453.233044 eV Total energy + Delta-G solvation = -3861.439817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.72583 -39.14323 -38.94098 -37.48144 -35.35119 -35.23680 -32.92918 -31.98722 -30.47456 -30.10712 -29.25781 -27.37522 -25.40575 -23.70305 -23.05311 -22.96488 -22.40727 -19.59738 -19.21225 -18.27280 -18.05334 -16.74381 -16.58412 -16.30630 -16.04017 -15.69286 -15.23764 -15.12393 -14.83856 -14.31492 -14.27521 -14.03712 -13.94142 -13.42216 -13.31409 -13.00346 -12.65410 -12.56990 -12.17617 -12.03243 -11.85959 -11.56200 -11.35249 -11.27709 -11.13008 -11.00021 -10.91990 -10.74351 -10.52758 -10.17906 -10.12788 -9.63997 -8.96274 -8.80743 -8.43519 -8.06552 -7.68807 -6.04215 -4.08779 0.91753 1.13889 2.10524 2.56230 3.21795 3.29534 3.34946 3.37404 3.42063 3.57279 3.69872 4.02404 4.43327 4.46241 4.56721 4.78595 4.88380 5.03714 5.08661 5.19558 5.24115 5.28739 5.31541 5.43366 5.56210 5.62494 5.68628 5.75784 5.87795 6.01093 6.02358 6.20210 6.30225 6.37530 6.45639 6.52848 6.62679 7.04204 7.29118 7.43843 7.52710 7.57071 7.91885 8.23366 8.37671 8.88893 9.05457 9.56161 11.03927 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012384 B = 0.004689 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.433846 B = 5969.591889 C = 7332.869404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.512 3.488 14 O -0.524 6.524 15 C -0.168 4.168 16 C 0.102 3.898 17 H 0.156 0.844 18 O -0.275 6.275 19 C 0.084 3.916 20 C -0.102 4.102 21 C -0.108 4.108 22 C -0.117 4.117 23 C -0.127 4.127 24 C 0.085 3.915 25 N -0.658 5.658 26 C 0.499 3.501 27 O -0.509 6.509 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.143 0.857 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 -10.402 17.035 19.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.297 3.703 14 O -0.401 6.401 15 C -0.209 4.209 16 C 0.042 3.958 17 H 0.174 0.826 18 O -0.188 6.188 19 C 0.037 3.963 20 C -0.121 4.121 21 C -0.127 4.127 22 C -0.136 4.136 23 C -0.148 4.148 24 C -0.010 4.010 25 N -0.305 5.305 26 C 0.285 3.715 27 O -0.383 6.383 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.161 0.839 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.875 -9.246 16.886 19.272 hybrid contribution 0.697 -0.761 0.024 1.032 sum 1.572 -10.007 16.910 19.712 Atomic orbital electron populations 1.22230 0.96709 1.01484 1.02418 1.21423 0.93563 0.84279 1.02606 1.48220 1.63719 1.13198 1.07611 1.19284 0.96313 0.93659 0.77924 1.21413 0.96878 1.31879 1.06184 0.92492 1.24923 0.97798 0.94920 0.96413 1.69930 1.35694 1.33421 1.14328 0.86516 0.84775 0.77650 0.78597 1.20702 1.21099 1.19849 1.19727 0.79100 0.86974 0.84457 1.90720 1.44931 1.17617 1.86810 1.22329 1.04729 0.99679 0.94156 1.22631 0.81957 1.01439 0.89823 0.82640 1.86511 1.14901 1.35076 1.82353 1.18751 0.92483 0.90442 0.94592 1.20734 0.91746 0.99641 1.00013 1.21044 0.99849 0.94770 0.97053 1.20928 0.95415 0.99800 0.97415 1.20550 0.94014 0.98096 1.02092 1.18055 0.85862 0.99350 0.97778 1.43670 1.10045 1.46308 1.30453 1.21502 0.84315 0.78367 0.87281 1.90794 1.21677 1.60357 1.65487 0.91850 0.92139 0.93099 0.89802 0.92058 0.95002 0.93790 0.92731 0.88610 0.87403 0.83904 0.84911 0.85259 0.85246 0.74807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.29 2.46 -175.05 -0.43 -12.72 16 4 C 0.25 6.35 5.16 -5.19 -0.03 6.33 16 5 C -0.52 -14.64 9.39 -34.45 -0.32 -14.96 16 6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 9 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.51 10.39 7.55 -10.99 -0.08 10.30 16 14 O -0.52 -12.83 14.99 -9.06 -0.14 -12.96 16 15 C -0.17 -2.53 3.77 -27.88 -0.11 -2.63 16 16 C 0.10 1.54 2.74 -27.84 -0.08 1.46 16 17 H 0.16 2.41 7.96 -51.93 -0.41 1.99 16 18 O -0.27 -4.59 9.37 -34.36 -0.32 -4.91 16 19 C 0.08 1.20 5.84 -39.09 -0.23 0.97 16 20 C -0.10 -1.35 9.99 -39.49 -0.39 -1.75 16 21 C -0.11 -1.11 10.04 -39.54 -0.40 -1.50 16 22 C -0.12 -1.02 10.04 -39.56 -0.40 -1.41 16 23 C -0.13 -1.14 9.93 -39.47 -0.39 -1.54 16 24 C 0.08 0.98 6.57 -83.52 -0.55 0.44 16 25 N -0.66 -7.29 5.46 -9.70 -0.05 -7.35 16 26 C 0.50 6.86 7.19 -10.87 -0.08 6.78 16 27 O -0.51 -8.08 17.95 5.54 0.10 -7.98 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.64 7.22 -51.93 -0.37 0.27 16 31 H 0.08 1.37 8.07 -51.92 -0.42 0.95 16 32 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 33 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.10 1.33 6.99 -51.93 -0.36 0.97 16 37 H 0.11 1.39 7.18 -51.93 -0.37 1.02 16 38 H 0.14 2.00 8.06 -52.48 -0.42 1.58 16 39 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.41 3.48 8.87 -40.82 -0.36 3.12 16 LS Contribution 357.07 15.07 5.38 5.38 Total: -1.00 -34.44 357.07 -8.06 -42.50 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.53 Total: 3.24 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -2.79 Total: 3.88 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.25 Total: -45.71 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.36 Total: -25.86 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.44 -8.06 -42.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267736204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.705 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds