Wall clock time and date at job start Tue Mar 31 2020 13:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46976 * 2 1 4 4 C 1.46506 * 120.00244 * 270.00142 * 3 2 1 5 5 C 1.50694 * 109.47360 * 270.00431 * 4 3 2 6 6 H 1.08004 * 119.99998 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00103 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00020 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00097 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47219 * 90.00165 * 9 7 5 11 11 H 1.48503 * 109.47044 * 210.00291 * 9 7 5 12 12 H 1.48507 * 109.46999 * 329.99894 * 9 7 5 13 13 C 1.34774 * 119.99955 * 90.00653 * 3 2 1 14 14 O 1.21287 * 119.99908 * 179.97438 * 13 3 2 15 15 C 1.50695 * 119.99942 * 359.97438 * 13 3 2 16 16 C 1.53003 * 109.47357 * 180.02562 * 15 13 3 17 17 H 1.09000 * 109.41519 * 55.07861 * 16 15 13 18 18 O 1.42945 * 109.44125 * 295.17278 * 16 15 13 19 19 C 1.36004 * 116.97210 * 285.49767 * 18 16 15 20 20 C 1.38438 * 120.45405 * 148.74458 * 19 18 16 21 21 C 1.38299 * 119.91091 * 178.13717 * 20 19 18 22 22 C 1.38280 * 120.22997 * 359.87966 * 21 20 19 23 23 C 1.38260 * 120.18035 * 0.45990 * 22 21 20 24 24 C 1.38527 * 119.87494 * 0.30187 * 23 22 21 25 25 N 1.40160 * 120.64559 * 179.60469 * 24 23 22 26 26 C 1.34949 * 119.23170 * 190.40145 * 25 24 23 27 27 O 1.21295 * 120.14330 * 185.58663 * 26 25 24 28 28 H 1.08993 * 109.47368 * 59.99404 * 1 2 3 29 29 H 1.08997 * 109.46918 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46458 * 299.99746 * 1 2 3 31 31 H 1.09007 * 109.47016 * 240.00649 * 2 1 3 32 32 H 1.08998 * 109.47795 * 120.00476 * 2 1 3 33 33 H 1.09005 * 109.46562 * 30.00504 * 4 3 2 34 34 H 1.08998 * 109.47300 * 149.99919 * 4 3 2 35 35 H 0.97006 * 120.00405 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47415 * 60.00560 * 15 13 3 37 37 H 1.09003 * 109.47257 * 300.00389 * 15 13 3 38 38 H 1.08005 * 120.04857 * 358.16080 * 20 19 18 39 39 H 1.08000 * 119.88604 * 179.85896 * 21 20 19 40 40 H 1.08006 * 119.90908 * 180.43838 * 22 21 20 41 41 H 1.08001 * 120.06894 * 180.32235 * 23 22 21 42 42 H 0.96997 * 120.38062 * 10.42774 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6856 1.8352 -1.7039 6 1 4.3428 1.2309 -1.0960 7 6 4.1489 2.3898 -2.8780 8 7 3.3489 3.1259 -3.6181 9 14 5.9133 2.0969 -3.4171 10 1 5.9773 0.8756 -4.2594 11 1 6.3918 3.2642 -4.2005 12 1 6.7734 1.9181 -2.2198 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9915 1.3063 2.4722 16 6 2.3225 2.2437 3.6352 17 1 1.7554 3.1684 3.5280 18 8 3.7210 2.5395 3.6247 19 6 4.5624 1.5572 4.0453 20 6 5.8359 1.4489 3.5135 21 6 6.6958 0.4698 3.9769 22 6 6.2888 -0.4002 4.9718 23 6 5.0160 -0.3024 5.5027 24 6 4.1444 0.6659 5.0318 25 7 2.8477 0.7741 5.5527 26 6 1.9552 1.5776 4.9372 27 8 0.8620 1.7629 5.4288 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8935 -0.5139 0.8899 33 1 1.5815 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1384 35 1 3.6748 3.5165 -4.4440 36 1 2.6214 0.4186 2.5301 37 1 0.9434 1.0124 2.5299 38 1 6.1578 2.1283 2.7381 39 1 7.6885 0.3842 3.5602 40 1 6.9671 -1.1583 5.3348 41 1 4.7018 -0.9795 6.2832 42 1 2.5949 0.2774 6.3466 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267736204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:14 Heat of formation + Delta-G solvation = -98.416346 kcal Electronic energy + Delta-G solvation = -27315.679423 eV Core-core repulsion = 23453.233044 eV Total energy + Delta-G solvation = -3862.446379 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.77421 -40.67775 -39.98734 -38.54554 -36.96329 -36.23299 -34.95627 -33.31023 -31.61051 -31.33720 -30.24629 -29.13249 -26.87081 -24.80395 -24.58812 -23.99871 -23.77518 -20.63520 -20.35474 -19.66688 -19.03708 -18.62403 -17.97619 -17.84629 -17.10539 -16.88030 -16.74271 -16.23548 -16.07764 -15.90287 -15.51478 -15.22500 -14.85924 -14.74179 -14.49501 -14.39629 -14.17020 -13.72200 -13.62184 -13.32240 -13.18872 -13.04815 -12.92473 -12.68367 -12.52095 -12.27040 -12.19445 -12.16891 -11.90349 -11.87846 -11.71094 -11.27135 -10.64855 -10.62773 -9.67295 -9.46066 -8.98252 -8.21235 -6.35767 0.01441 0.29148 1.08293 1.36727 1.40140 1.50190 1.58534 1.76847 2.20280 2.27174 2.42215 2.74593 2.83449 3.08623 3.31991 3.56032 3.66774 3.82350 4.04854 4.10630 4.18304 4.33939 4.36696 4.37287 4.40989 4.55677 4.61153 4.81473 4.92028 4.96088 5.04185 5.04619 5.22279 5.22562 5.36547 5.46596 5.53478 5.57794 5.68503 5.74605 5.84532 6.07318 6.29872 6.62989 6.68691 6.76487 7.28159 7.44660 8.85985 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012384 B = 0.004689 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.433846 B = 5969.591889 C = 7332.869404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.099 3.901 3 N -0.601 5.601 4 C 0.263 3.737 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.505 3.495 14 O -0.578 6.578 15 C -0.147 4.147 16 C 0.096 3.904 17 H 0.140 0.860 18 O -0.307 6.307 19 C 0.050 3.950 20 C -0.131 4.131 21 C -0.105 4.105 22 C -0.104 4.104 23 C -0.110 4.110 24 C 0.077 3.923 25 N -0.639 5.639 26 C 0.509 3.491 27 O -0.533 6.533 28 H 0.041 0.959 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.023 0.977 34 H -0.003 1.003 35 H 0.266 0.734 36 H 0.114 0.886 37 H 0.136 0.864 38 H 0.117 0.883 39 H 0.153 0.847 40 H 0.169 0.831 41 H 0.169 0.831 42 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.569 -14.222 19.225 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.024 4.024 3 N -0.332 5.332 4 C 0.142 3.858 5 C -0.578 4.578 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.293 3.707 14 O -0.458 6.458 15 C -0.188 4.188 16 C 0.036 3.964 17 H 0.157 0.843 18 O -0.222 6.222 19 C 0.004 3.996 20 C -0.150 4.150 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.130 4.130 24 C -0.018 4.018 25 N -0.287 5.287 26 C 0.295 3.705 27 O -0.409 6.409 28 H 0.060 0.940 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.041 0.959 34 H 0.015 0.985 35 H 0.075 0.925 36 H 0.132 0.868 37 H 0.154 0.846 38 H 0.135 0.865 39 H 0.171 0.829 40 H 0.187 0.813 41 H 0.187 0.813 42 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 2.182 -13.139 19.108 23.292 hybrid contribution 0.376 0.406 -0.626 0.835 sum 2.558 -12.733 18.482 22.589 Atomic orbital electron populations 1.22171 0.94508 1.03620 1.01774 1.21753 0.95354 0.81390 1.03855 1.48233 1.63839 1.15060 1.06109 1.18716 0.95411 0.91509 0.80169 1.21672 0.97769 1.31956 1.06419 0.92889 1.25849 1.02367 0.94450 0.96439 1.70056 1.37811 1.34238 1.14795 0.85437 0.79091 0.78164 0.78283 1.18746 1.20796 1.19529 1.20605 0.77692 0.86552 0.85899 1.90688 1.47175 1.20206 1.87748 1.22185 1.06653 0.99313 0.90620 1.22551 0.81735 1.01099 0.90985 0.84285 1.86464 1.15582 1.36949 1.83202 1.19046 0.92610 0.91452 0.96474 1.20776 0.92567 1.00962 1.00704 1.21345 1.00107 0.93760 0.97150 1.21408 0.95736 0.99379 0.95746 1.21032 0.93304 0.96947 1.01740 1.18139 0.86303 0.99732 0.97657 1.43430 1.09406 1.45380 1.30491 1.21028 0.84208 0.78500 0.86752 1.90788 1.22715 1.61418 1.66022 0.93999 0.88511 0.92293 0.90635 0.88675 0.95929 0.98509 0.92465 0.86782 0.84640 0.86535 0.82935 0.81309 0.81323 0.72832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 10.24 71.98 0.74 -3.30 16 2 C 0.10 3.00 5.93 86.38 0.51 3.51 16 3 N -0.60 -25.60 2.46 -826.14 -2.03 -27.63 16 4 C 0.26 14.33 5.16 85.63 0.44 14.77 16 5 C -0.54 -31.23 9.39 25.60 0.24 -30.99 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -56.62 13.29 21.44 0.28 -56.33 16 9 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 C 0.50 21.29 7.55 87.66 0.66 21.95 16 14 O -0.58 -30.40 14.99 10.92 0.16 -30.23 16 15 C -0.15 -4.37 3.77 29.85 0.11 -4.26 16 16 C 0.10 3.00 2.74 29.88 0.08 3.08 16 17 H 0.14 4.65 7.96 -2.39 -0.02 4.64 16 18 O -0.31 -10.81 9.37 -79.62 -0.75 -11.55 16 19 C 0.05 1.43 5.84 22.59 0.13 1.56 16 20 C -0.13 -3.52 9.99 22.33 0.22 -3.29 16 21 C -0.11 -1.90 10.04 22.29 0.22 -1.68 16 22 C -0.10 -1.32 10.04 22.29 0.22 -1.09 16 23 C -0.11 -1.46 9.93 22.34 0.22 -1.24 16 24 C 0.08 1.59 6.57 38.15 0.25 1.84 16 25 N -0.64 -12.57 5.46 -302.89 -1.66 -14.22 16 26 C 0.51 13.49 7.19 87.66 0.63 14.12 16 27 O -0.53 -16.42 17.95 -3.07 -0.06 -16.48 16 28 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.37 7.22 -2.39 -0.02 1.35 16 31 H 0.08 2.42 8.07 -2.38 -0.02 2.41 16 32 H 0.10 2.25 6.44 -2.39 -0.02 2.24 16 33 H 0.02 1.25 8.07 -2.38 -0.02 1.23 16 34 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 35 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 36 H 0.11 2.97 6.99 -2.39 -0.02 2.95 16 37 H 0.14 3.23 7.18 -2.39 -0.02 3.22 16 38 H 0.12 3.60 8.06 -2.91 -0.02 3.57 16 39 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 41 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 42 H 0.43 5.70 8.87 -92.71 -0.82 4.88 16 Total: -1.00 -81.05 357.07 3.38 -77.68 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.23 Total: 15.98 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 5.15 Total: 15.90 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -3.40 Total: -98.19 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: -0.64 Total: -58.26 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -81.05 3.38 -77.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267736204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.739 kcal (2) G-P(sol) polarization free energy of solvation -81.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds