Wall clock time and date at job start Tue Mar 31 2020 13:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.47194 * 2 1 4 4 C 1.46507 * 119.99846 * 274.47429 * 3 2 1 5 5 C 1.50697 * 109.46693 * 264.92803 * 4 3 2 6 6 H 1.08005 * 120.00396 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00231 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99458 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00344 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47096 * 90.00109 * 9 7 5 11 11 H 1.48505 * 109.47203 * 209.99923 * 9 7 5 12 12 H 1.48495 * 109.47425 * 330.00133 * 9 7 5 13 13 C 1.34773 * 119.99897 * 94.46860 * 3 2 1 14 14 O 1.21359 * 120.00112 * 354.64024 * 13 3 2 15 15 C 1.49338 * 119.99826 * 174.63767 * 13 3 2 16 16 O 1.21390 * 119.99691 * 354.43768 * 15 13 3 17 17 N 1.34771 * 120.00284 * 174.43909 * 15 13 3 18 18 C 1.39861 * 120.00404 * 185.00072 * 17 15 13 19 19 C 1.38936 * 120.20118 * 215.20212 * 18 17 15 20 20 C 1.37829 * 120.27358 * 180.15422 * 19 18 17 21 21 C 1.39330 * 120.34418 * 0.02562 * 20 19 18 22 22 C 1.39003 * 118.97972 * 359.60688 * 21 20 19 23 23 C 1.37588 * 120.85277 * 0.57379 * 22 21 20 24 24 C 1.51662 * 106.98484 * 180.56765 * 22 21 20 25 25 C 1.54703 * 101.94843 * 15.72177 * 24 22 21 26 26 O 1.36215 * 129.78122 * 179.56564 * 21 20 19 27 27 H 1.08993 * 109.46939 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46906 * 300.00107 * 1 2 3 29 29 H 1.09000 * 109.47472 * 60.00028 * 1 2 3 30 30 H 1.08999 * 109.47026 * 240.00316 * 2 1 3 31 31 H 1.09000 * 109.47472 * 119.99972 * 2 1 3 32 32 H 1.09005 * 109.46990 * 24.92498 * 4 3 2 33 33 H 1.08991 * 109.47079 * 144.93070 * 4 3 2 34 34 H 0.96996 * 119.99428 * 179.97438 * 8 7 5 35 35 H 0.97002 * 119.99555 * 5.00303 * 17 15 13 36 36 H 1.08003 * 119.86029 * 0.13038 * 19 18 17 37 37 H 1.08006 * 119.83080 * 180.02562 * 20 19 18 38 38 H 1.07997 * 120.01602 * 179.64122 * 23 22 21 39 39 H 1.09006 * 110.93921 * 257.55508 * 24 22 21 40 40 H 1.08997 * 110.94172 * 133.90174 * 24 22 21 41 41 H 1.09003 * 110.74205 * 92.91571 * 25 24 22 42 42 H 1.08994 * 110.75294 * 216.08177 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1692 2.1049 -1.2649 5 6 3.5920 1.9835 -1.7463 6 1 4.3119 1.4231 -1.1682 7 6 3.9748 2.5870 -2.9255 8 7 3.0981 3.2691 -3.6298 9 14 5.7382 2.4360 -3.5226 10 1 5.8676 1.2342 -4.3853 11 1 6.1022 3.6464 -4.3023 12 1 6.6469 2.3075 -2.3552 13 6 2.3287 1.9863 1.1636 14 8 2.1125 1.4233 2.2168 15 6 2.9387 3.3494 1.1570 16 8 3.2481 3.8707 0.1053 17 7 3.1457 4.0007 2.3186 18 6 3.6191 5.3167 2.3078 19 6 4.4892 5.7547 3.2985 20 6 4.9541 7.0522 3.2911 21 6 4.5559 7.9368 2.2910 22 6 3.6913 7.4876 1.2996 23 6 3.2220 6.1942 1.3055 24 6 3.4528 8.6528 0.3585 25 6 4.6009 9.6156 0.7434 26 8 4.8848 9.2452 2.1031 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.4962 1.6794 -2.0094 33 1 1.9254 3.1563 -1.1133 34 1 3.3674 3.6940 -4.4591 35 1 2.9665 3.5566 3.1622 36 1 4.8022 5.0756 4.0778 37 1 5.6305 7.3849 4.0645 38 1 2.5462 5.8612 0.5318 39 1 2.4813 9.1111 0.5443 40 1 3.5403 8.3379 -0.6813 41 1 5.4717 9.4512 0.1086 42 1 4.2716 10.6528 0.6835 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275787108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:25 Heat of formation + Delta-G solvation = -54.378924 kcal Electronic energy + Delta-G solvation = -26912.238622 eV Core-core repulsion = 23051.701849 eV Total energy + Delta-G solvation = -3860.536773 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.09486 -40.22788 -38.49148 -36.96306 -35.63309 -33.85528 -32.66131 -32.59765 -30.51927 -29.28967 -28.87650 -27.08250 -24.97317 -23.59876 -23.07568 -22.42508 -21.75027 -20.88426 -19.24030 -17.54781 -17.35087 -16.76332 -16.65755 -16.28248 -16.02649 -15.74462 -15.06566 -14.81293 -14.24002 -14.04934 -13.95750 -13.61624 -13.38607 -13.17728 -12.98368 -12.91148 -12.62879 -12.38617 -12.33161 -11.98509 -11.74347 -11.69023 -11.57623 -11.23349 -10.95941 -10.87113 -10.69175 -10.62024 -10.48480 -9.99454 -9.70702 -9.58026 -8.85582 -8.64926 -8.33004 -7.91063 -7.53703 -6.03890 -4.04838 1.27444 1.43662 2.16933 2.87421 3.29982 3.30550 3.36620 3.41582 3.69681 3.97452 4.08380 4.43608 4.47947 4.62494 4.96299 4.98063 5.03186 5.20101 5.28781 5.33185 5.37582 5.51116 5.67022 5.67276 5.75822 5.77978 5.78970 5.95146 6.08316 6.13980 6.26610 6.40578 6.46026 6.52605 6.53775 6.66558 6.83646 7.23481 7.33508 7.35431 7.57232 7.85385 8.06719 8.17609 8.35223 8.66158 8.94248 9.57420 11.05203 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011124 B = 0.004717 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.376031 B = 5933.962360 C = 7563.645163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 N -0.559 5.559 4 C 0.232 3.768 5 C -0.509 4.509 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.561 6.561 15 C 0.485 3.515 16 O -0.428 6.428 17 N -0.661 5.661 18 C 0.135 3.865 19 C -0.113 4.113 20 C -0.119 4.119 21 C 0.080 3.920 22 C -0.151 4.151 23 C -0.068 4.068 24 C -0.111 4.111 25 C 0.053 3.947 26 O -0.309 6.309 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.261 0.739 35 H 0.416 0.584 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.140 0.860 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.268 6.883 10.271 12.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.289 5.289 4 C 0.113 3.887 5 C -0.548 4.548 6 H 0.072 0.928 7 C -0.133 4.133 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.289 3.711 14 O -0.443 6.443 15 C 0.266 3.734 16 O -0.294 6.294 17 N -0.311 5.311 18 C 0.040 3.960 19 C -0.134 4.134 20 C -0.138 4.138 21 C 0.035 3.965 22 C -0.152 4.152 23 C -0.088 4.088 24 C -0.148 4.148 25 C -0.022 4.022 26 O -0.223 6.223 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.253 0.747 36 H 0.152 0.848 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.126 7.169 9.890 12.267 hybrid contribution 0.933 -0.294 -0.329 1.032 sum -0.193 6.874 9.561 11.777 Atomic orbital electron populations 1.22102 0.96218 1.01606 1.02259 1.21434 0.93971 0.82761 1.03037 1.48302 1.58941 1.13484 1.08203 1.19867 0.97708 0.93120 0.77996 1.21169 0.94846 1.32552 1.06215 0.92829 1.24779 0.97175 0.94838 0.96492 1.69913 1.33990 1.34089 1.15180 0.86583 0.85230 0.77401 0.78687 1.20778 1.21199 1.20056 1.19763 0.80164 0.86579 0.84545 1.90646 1.55933 1.66684 1.31041 1.20452 0.81274 0.87613 0.84042 1.91040 1.43189 1.66315 1.28890 1.43189 1.66050 1.11785 1.10079 1.17457 0.97133 0.84128 0.97259 1.20601 0.96998 0.95665 1.00129 1.19918 1.02957 0.91392 0.99539 1.19541 0.96005 0.84286 0.96652 1.20549 1.00627 0.95268 0.98749 1.20286 0.99564 0.90269 0.98729 1.21799 0.99627 0.93029 1.00387 1.23795 0.97646 0.99738 0.81043 1.86783 1.82822 1.22724 1.29991 0.92027 0.92701 0.92225 0.89888 0.90572 0.94857 0.92267 0.92918 0.74715 0.84778 0.85268 0.84266 0.89167 0.88569 0.90598 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 10.24 37.16 0.38 -2.06 16 2 C 0.11 1.94 6.12 -4.04 -0.02 1.91 16 3 N -0.56 -11.75 2.47 -175.61 -0.43 -12.18 16 4 C 0.23 5.67 4.77 -5.19 -0.02 5.64 16 5 C -0.51 -13.76 7.74 -34.44 -0.27 -14.03 16 6 H 0.05 1.48 7.81 -52.48 -0.41 1.07 16 7 C 0.07 1.92 5.46 -17.81 -0.10 1.82 16 8 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.51 10.45 7.68 -11.64 -0.09 10.36 16 14 O -0.56 -11.46 16.05 5.49 0.09 -11.37 16 15 C 0.48 9.78 7.43 -11.64 -0.09 9.69 16 16 O -0.43 -10.05 9.97 5.46 0.05 -10.00 16 17 N -0.66 -10.79 5.33 -10.25 -0.05 -10.85 16 18 C 0.13 2.14 6.25 -83.65 -0.52 1.62 16 19 C -0.11 -1.50 9.94 -39.47 -0.39 -1.89 16 20 C -0.12 -1.56 10.05 -39.33 -0.40 -1.95 16 21 C 0.08 1.17 7.04 -38.89 -0.27 0.90 16 22 C -0.15 -2.28 6.27 -104.10 -0.65 -2.94 16 23 C -0.07 -1.15 8.64 -39.53 -0.34 -1.49 16 24 C -0.11 -1.34 7.11 -26.51 -0.19 -1.53 16 25 C 0.05 0.56 8.01 38.05 0.30 0.87 16 26 O -0.31 -4.21 11.10 -20.43 -0.23 -4.43 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 31 H 0.08 1.29 7.37 -51.93 -0.38 0.91 16 32 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 33 H 0.06 1.56 5.92 -51.93 -0.31 1.26 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.42 5.78 8.30 -40.82 -0.34 5.44 16 36 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 37 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 38 H 0.14 2.60 6.56 -52.49 -0.34 2.26 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -31.81 355.33 -7.73 -39.55 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.56 Total: 5.08 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -2.67 Total: 6.92 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.25 Total: -47.84 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.08 Total: -25.80 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.81 -7.73 -39.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275787108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.833 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds