Wall clock time and date at job start Tue Mar 31 2020 13:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.47194 * 2 1 4 4 C 1.46507 * 119.99846 * 274.47429 * 3 2 1 5 5 C 1.50697 * 109.46693 * 264.92803 * 4 3 2 6 6 H 1.08005 * 120.00396 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00231 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99458 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00344 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47096 * 90.00109 * 9 7 5 11 11 H 1.48505 * 109.47203 * 209.99923 * 9 7 5 12 12 H 1.48495 * 109.47425 * 330.00133 * 9 7 5 13 13 C 1.34773 * 119.99897 * 94.46860 * 3 2 1 14 14 O 1.21359 * 120.00112 * 354.64024 * 13 3 2 15 15 C 1.49338 * 119.99826 * 174.63767 * 13 3 2 16 16 O 1.21390 * 119.99691 * 354.43768 * 15 13 3 17 17 N 1.34771 * 120.00284 * 174.43909 * 15 13 3 18 18 C 1.39861 * 120.00404 * 185.00072 * 17 15 13 19 19 C 1.38936 * 120.20118 * 215.20212 * 18 17 15 20 20 C 1.37829 * 120.27358 * 180.15422 * 19 18 17 21 21 C 1.39330 * 120.34418 * 0.02562 * 20 19 18 22 22 C 1.39003 * 118.97972 * 359.60688 * 21 20 19 23 23 C 1.37588 * 120.85277 * 0.57379 * 22 21 20 24 24 C 1.51662 * 106.98484 * 180.56765 * 22 21 20 25 25 C 1.54703 * 101.94843 * 15.72177 * 24 22 21 26 26 O 1.36215 * 129.78122 * 179.56564 * 21 20 19 27 27 H 1.08993 * 109.46939 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46906 * 300.00107 * 1 2 3 29 29 H 1.09000 * 109.47472 * 60.00028 * 1 2 3 30 30 H 1.08999 * 109.47026 * 240.00316 * 2 1 3 31 31 H 1.09000 * 109.47472 * 119.99972 * 2 1 3 32 32 H 1.09005 * 109.46990 * 24.92498 * 4 3 2 33 33 H 1.08991 * 109.47079 * 144.93070 * 4 3 2 34 34 H 0.96996 * 119.99428 * 179.97438 * 8 7 5 35 35 H 0.97002 * 119.99555 * 5.00303 * 17 15 13 36 36 H 1.08003 * 119.86029 * 0.13038 * 19 18 17 37 37 H 1.08006 * 119.83080 * 180.02562 * 20 19 18 38 38 H 1.07997 * 120.01602 * 179.64122 * 23 22 21 39 39 H 1.09006 * 110.93921 * 257.55508 * 24 22 21 40 40 H 1.08997 * 110.94172 * 133.90174 * 24 22 21 41 41 H 1.09003 * 110.74205 * 92.91571 * 25 24 22 42 42 H 1.08994 * 110.75294 * 216.08177 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1692 2.1049 -1.2649 5 6 3.5920 1.9835 -1.7463 6 1 4.3119 1.4231 -1.1682 7 6 3.9748 2.5870 -2.9255 8 7 3.0981 3.2691 -3.6298 9 14 5.7382 2.4360 -3.5226 10 1 5.8676 1.2342 -4.3853 11 1 6.1022 3.6464 -4.3023 12 1 6.6469 2.3075 -2.3552 13 6 2.3287 1.9863 1.1636 14 8 2.1125 1.4233 2.2168 15 6 2.9387 3.3494 1.1570 16 8 3.2481 3.8707 0.1053 17 7 3.1457 4.0007 2.3186 18 6 3.6191 5.3167 2.3078 19 6 4.4892 5.7547 3.2985 20 6 4.9541 7.0522 3.2911 21 6 4.5559 7.9368 2.2910 22 6 3.6913 7.4876 1.2996 23 6 3.2220 6.1942 1.3055 24 6 3.4528 8.6528 0.3585 25 6 4.6009 9.6156 0.7434 26 8 4.8848 9.2452 2.1031 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.4962 1.6794 -2.0094 33 1 1.9254 3.1563 -1.1133 34 1 3.3674 3.6940 -4.4591 35 1 2.9665 3.5566 3.1622 36 1 4.8022 5.0756 4.0778 37 1 5.6305 7.3849 4.0645 38 1 2.5462 5.8612 0.5318 39 1 2.4813 9.1111 0.5443 40 1 3.5403 8.3379 -0.6813 41 1 5.4717 9.4512 0.1086 42 1 4.2716 10.6528 0.6835 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275787108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:24 Heat of formation + Delta-G solvation = -74.553979 kcal Electronic energy + Delta-G solvation = -26913.113478 eV Core-core repulsion = 23051.701849 eV Total energy + Delta-G solvation = -3861.411629 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.28093 -41.66387 -39.94767 -38.33054 -37.25178 -35.23662 -34.67549 -33.63783 -32.04598 -30.39680 -30.03563 -29.02373 -26.42831 -25.01909 -24.69609 -23.64747 -22.87835 -22.20248 -20.74561 -19.04459 -18.57746 -18.47631 -18.17927 -17.57030 -17.40827 -16.91325 -16.69979 -16.55697 -15.96960 -15.35858 -15.16375 -15.10628 -14.63542 -14.48631 -14.29449 -14.20045 -13.97101 -13.80093 -13.62132 -13.45647 -13.31155 -13.16155 -12.72870 -12.72433 -12.67924 -12.40186 -12.23843 -12.08000 -11.81322 -11.80429 -11.69150 -10.86131 -10.58974 -10.24386 -9.88209 -9.64939 -8.73413 -8.14714 -6.21532 0.03221 0.28355 0.65470 1.36093 1.38203 1.42042 1.47745 2.17458 2.33535 2.39913 2.63708 2.71023 3.19458 3.34574 3.52837 3.69193 3.89846 4.12019 4.15188 4.17708 4.25697 4.34640 4.49125 4.51413 4.63793 4.70767 4.75702 4.83943 4.87183 4.93555 5.00805 5.01210 5.21289 5.24703 5.30052 5.36101 5.38339 5.52402 5.66354 5.75811 6.09515 6.14920 6.17711 6.32080 6.77923 6.84230 7.10293 7.43616 8.93689 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011124 B = 0.004717 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.376031 B = 5933.962360 C = 7563.645163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.104 3.896 3 N -0.566 5.566 4 C 0.252 3.748 5 C -0.511 4.511 6 H 0.043 0.957 7 C 0.022 3.978 8 N -0.922 5.922 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.280 1.280 13 C 0.505 3.495 14 O -0.558 6.558 15 C 0.484 3.516 16 O -0.470 6.470 17 N -0.641 5.641 18 C 0.109 3.891 19 C -0.099 4.099 20 C -0.116 4.116 21 C 0.076 3.924 22 C -0.170 4.170 23 C -0.091 4.091 24 C -0.114 4.114 25 C 0.053 3.947 26 O -0.315 6.315 27 H 0.094 0.906 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.023 0.977 33 H 0.037 0.963 34 H 0.263 0.737 35 H 0.428 0.572 36 H 0.168 0.832 37 H 0.161 0.839 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.190 7.191 11.792 13.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.018 4.018 3 N -0.296 5.296 4 C 0.131 3.869 5 C -0.550 4.550 6 H 0.061 0.939 7 C -0.177 4.177 8 N -0.562 5.562 9 Si 0.775 3.225 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.205 1.205 13 C 0.287 3.713 14 O -0.440 6.440 15 C 0.265 3.735 16 O -0.341 6.341 17 N -0.292 5.292 18 C 0.015 3.985 19 C -0.119 4.119 20 C -0.135 4.135 21 C 0.030 3.970 22 C -0.171 4.171 23 C -0.111 4.111 24 C -0.151 4.151 25 C -0.021 4.021 26 O -0.230 6.230 27 H 0.113 0.887 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.267 0.733 36 H 0.185 0.815 37 H 0.179 0.821 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.056 7.462 11.464 13.679 hybrid contribution 0.584 -0.330 -0.705 0.973 sum 0.528 7.132 10.759 12.919 Atomic orbital electron populations 1.22027 0.94066 1.03570 1.01513 1.21694 0.95763 0.80872 1.03468 1.48287 1.59423 1.14702 1.07181 1.19367 0.96201 0.92219 0.79067 1.21325 0.95705 1.31963 1.06030 0.93893 1.25477 1.00611 0.94730 0.96852 1.70009 1.35588 1.34998 1.15599 0.85712 0.80925 0.77825 0.78082 1.19304 1.20954 1.20500 1.19886 0.80055 0.86837 0.84475 1.90632 1.55928 1.66764 1.30645 1.20487 0.80975 0.87478 0.84554 1.91028 1.45434 1.67136 1.30458 1.42987 1.64820 1.11940 1.09413 1.17690 0.98820 0.83531 0.98421 1.20926 0.95228 0.96276 0.99490 1.20337 1.02624 0.90905 0.99588 1.19832 0.95583 0.84893 0.96646 1.20850 1.00892 0.95309 1.00063 1.20199 1.00389 0.91672 0.98856 1.21908 1.01217 0.92526 0.99455 1.24047 0.97235 1.01066 0.79743 1.86772 1.82693 1.22007 1.31491 0.88681 0.93226 0.93114 0.89765 0.89765 0.95891 0.94517 0.92852 0.73276 0.81467 0.82110 0.87323 0.87734 0.89268 0.90044 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 10.24 71.98 0.74 -3.67 16 2 C 0.10 3.57 6.12 86.38 0.53 4.10 16 3 N -0.57 -24.15 2.47 -827.86 -2.04 -26.19 16 4 C 0.25 12.74 4.77 85.63 0.41 13.15 16 5 C -0.51 -28.29 7.74 25.60 0.20 -28.10 16 6 H 0.04 2.42 7.81 -2.91 -0.02 2.39 16 7 C 0.02 1.26 5.46 84.66 0.46 1.72 16 8 N -0.92 -54.00 13.29 21.45 0.28 -53.72 16 9 Si 0.95 45.03 29.54 68.60 2.03 47.05 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 C 0.51 21.03 7.68 87.23 0.67 21.70 16 14 O -0.56 -22.40 16.05 -3.27 -0.05 -22.45 16 15 C 0.48 20.07 7.43 87.24 0.65 20.72 16 16 O -0.47 -23.22 9.97 -3.37 -0.03 -23.25 16 17 N -0.64 -21.00 5.33 -304.68 -1.62 -22.63 16 18 C 0.11 3.46 6.25 38.21 0.24 3.70 16 19 C -0.10 -2.42 9.94 22.34 0.22 -2.19 16 20 C -0.12 -2.73 10.05 22.44 0.23 -2.51 16 21 C 0.08 2.10 7.04 22.72 0.16 2.26 16 22 C -0.17 -5.19 6.27 -19.53 -0.12 -5.31 16 23 C -0.09 -3.20 8.64 22.30 0.19 -3.01 16 24 C -0.11 -2.72 7.11 30.74 0.22 -2.50 16 25 C 0.05 1.03 8.01 72.56 0.58 1.61 16 26 O -0.32 -7.92 11.10 -96.00 -1.07 -8.99 16 27 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 2.86 8.11 -2.39 -0.02 2.84 16 31 H 0.08 2.76 7.37 -2.39 -0.02 2.74 16 32 H 0.02 1.20 8.03 -2.38 -0.02 1.18 16 33 H 0.04 2.05 5.92 -2.39 -0.01 2.04 16 34 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 35 H 0.43 11.53 8.30 -92.71 -0.77 10.76 16 36 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.11 4.44 6.56 -2.91 -0.02 4.42 16 39 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.14 1.70 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -69.85 355.33 3.14 -66.71 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.29 Total: 21.80 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 5.37 Total: 21.67 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -3.38 Total: -102.53 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -1.15 Total: -54.69 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -69.85 3.14 -66.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275787108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.847 kcal (2) G-P(sol) polarization free energy of solvation -69.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds