Wall clock time and date at job start Tue Mar 31 2020 12:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47291 * 2 1 4 4 C 1.50698 * 109.47030 * 239.99695 * 2 1 3 5 5 H 1.08007 * 119.99979 * 244.71316 * 4 2 1 6 6 C 1.37873 * 119.99926 * 64.71259 * 4 2 1 7 7 N 1.31521 * 119.99967 * 186.14830 * 6 4 2 8 8 Si 1.86801 * 120.00197 * 5.87523 * 6 4 2 9 9 H 1.48504 * 109.46982 * 270.27389 * 8 6 4 10 10 H 1.48493 * 109.46972 * 30.27396 * 8 6 4 11 11 H 1.48499 * 109.46962 * 150.27578 * 8 6 4 12 12 N 1.46500 * 109.46711 * 119.99835 * 2 1 3 13 13 C 1.34777 * 119.99879 * 274.99357 * 12 2 1 14 14 O 1.21365 * 119.99942 * 0.02562 * 13 12 2 15 15 C 1.49336 * 119.99961 * 180.02562 * 13 12 2 16 16 O 1.21391 * 120.00067 * 1.49316 * 15 13 12 17 17 N 1.34777 * 119.99956 * 181.48384 * 15 13 12 18 18 C 1.47298 * 121.14381 * 358.72794 * 17 15 13 19 19 C 1.53147 * 107.79572 * 221.87589 * 18 17 15 20 20 H 1.08999 * 109.40829 * 61.87900 * 19 18 17 21 21 C 1.53001 * 109.74868 * 182.14804 * 19 18 17 22 22 O 1.42960 * 108.91323 * 302.11743 * 19 18 17 23 23 C 1.35885 * 117.74755 * 49.30511 * 22 19 18 24 24 C 1.38703 * 119.66467 * 159.92177 * 23 22 19 25 25 C 1.38200 * 120.05097 * 179.69333 * 24 23 22 26 26 C 1.38303 * 120.31232 * 359.97438 * 25 24 23 27 27 C 1.38227 * 120.07252 * 0.07582 * 26 25 24 28 28 C 1.38658 * 119.87138 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47103 * 174.83733 * 1 2 3 30 30 H 1.08994 * 109.47115 * 294.83321 * 1 2 3 31 31 H 1.09002 * 109.46935 * 54.83411 * 1 2 3 32 32 H 0.97004 * 119.99954 * 354.69581 * 7 6 4 33 33 H 0.97003 * 120.00301 * 95.00514 * 12 2 1 34 34 H 1.08991 * 109.83515 * 341.48976 * 18 17 15 35 35 H 1.09000 * 109.83102 * 102.44744 * 18 17 15 36 36 H 1.09000 * 109.46765 * 179.55600 * 21 19 18 37 37 H 1.08994 * 109.47195 * 299.55532 * 21 19 18 38 38 H 1.08997 * 109.46743 * 59.56275 * 21 19 18 39 39 H 1.08000 * 119.97639 * 359.67566 * 24 23 22 40 40 H 1.07997 * 119.84791 * 179.97438 * 25 24 23 41 41 H 1.07999 * 119.96551 * 180.08805 * 26 25 24 42 42 H 1.08000 * 120.06853 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5890 -1.6309 -1.1331 6 6 1.7812 -0.1855 -2.4803 7 7 2.1124 -0.8641 -3.5572 8 14 0.9637 1.4861 -2.6444 9 1 -0.5107 1.3139 -2.6871 10 1 1.3298 2.3324 -1.4805 11 1 1.4222 2.1405 -3.8961 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8581 1.1593 2.4116 15 6 2.6453 -0.7220 3.5764 16 8 2.9600 -1.8928 3.5154 17 7 2.7457 -0.0572 4.7445 18 6 2.3974 1.3708 4.8407 19 6 3.4553 2.0529 5.7131 20 1 4.4314 1.9614 5.2368 21 6 3.1063 3.5323 5.8871 22 8 3.4841 1.4136 6.9915 23 6 3.5590 0.0571 7.0190 24 6 4.0029 -0.5828 8.1667 25 6 4.0763 -1.9623 8.2056 26 6 3.7080 -2.7122 7.1034 27 6 3.2653 -2.0838 5.9546 28 6 3.1906 -0.7000 5.9094 29 1 -0.3633 -1.0235 -0.0925 30 1 -0.3633 0.4316 0.9326 31 1 -0.3633 0.5919 -0.8401 32 1 2.6020 -1.6974 -3.4739 33 1 2.2490 -1.6318 1.1527 34 1 2.3936 1.8183 3.8469 35 1 1.4155 1.4817 5.3009 36 1 3.8576 4.0114 6.5150 37 1 3.0849 4.0178 4.9115 38 1 2.1278 3.6217 6.3591 39 1 4.2917 -0.0025 9.0306 40 1 4.4228 -2.4571 9.1008 41 1 3.7662 -3.7900 7.1405 42 1 2.9782 -2.6695 5.0938 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276096722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:17 Heat of formation + Delta-G solvation = -51.087692 kcal Electronic energy + Delta-G solvation = -27004.906341 eV Core-core repulsion = 23144.512286 eV Total energy + Delta-G solvation = -3860.394054 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.70380 -39.94500 -38.51762 -37.67254 -36.09758 -35.01784 -32.80381 -32.59131 -30.68413 -30.04538 -29.24837 -26.93819 -25.28163 -24.78912 -23.27429 -22.90384 -21.07488 -20.22469 -19.95226 -18.54357 -18.08984 -17.54572 -17.12930 -16.42614 -16.16083 -15.89759 -15.43512 -15.22820 -14.56249 -14.36333 -14.04680 -13.93735 -13.86760 -13.39617 -13.25197 -13.14086 -12.89420 -12.69329 -12.43778 -12.26354 -12.01884 -11.92503 -11.83698 -11.63128 -11.34134 -11.08941 -10.68104 -10.67304 -10.23590 -10.19784 -9.89911 -9.08089 -8.96169 -8.69540 -8.61797 -8.53660 -7.96813 -6.67257 -4.36584 0.93314 1.26749 1.71311 2.19582 2.98495 3.26213 3.30054 3.35153 3.48354 3.53165 3.71625 4.27288 4.30774 4.52438 4.67198 4.72115 4.75148 4.93442 5.09551 5.10882 5.20131 5.28422 5.35067 5.40561 5.47111 5.68169 5.81415 5.84448 5.94090 6.12861 6.16421 6.25005 6.30126 6.39993 6.42087 6.64649 6.69936 6.87277 6.94647 7.07672 7.22576 7.35486 7.59693 8.03536 8.15242 8.32366 8.65566 9.35005 10.73977 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.003492 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.026023 B = 8015.290579 C = 9059.813797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.233 3.767 3 H 0.055 0.945 4 C -0.615 4.615 5 H 0.066 0.934 6 C 0.038 3.962 7 N -0.899 5.899 8 Si 1.051 2.949 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.654 5.654 13 C 0.501 3.499 14 O -0.530 6.530 15 C 0.510 3.490 16 O -0.499 6.499 17 N -0.529 5.529 18 C 0.030 3.970 19 C 0.073 3.927 20 H 0.076 0.924 21 C -0.141 4.141 22 O -0.313 6.313 23 C 0.101 3.899 24 C -0.132 4.132 25 C -0.107 4.107 26 C -0.132 4.132 27 C -0.116 4.116 28 C 0.074 3.926 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.271 0.729 33 H 0.408 0.592 34 H 0.171 0.829 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.925 3.558 21.699 22.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.130 3.870 3 H 0.073 0.927 4 C -0.653 4.653 5 H 0.084 0.916 6 C -0.169 4.169 7 N -0.532 5.532 8 Si 0.880 3.120 9 H -0.206 1.206 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.302 5.302 13 C 0.280 3.720 14 O -0.410 6.410 15 C 0.295 3.705 16 O -0.374 6.374 17 N -0.254 5.254 18 C -0.091 4.091 19 C 0.017 3.983 20 H 0.094 0.906 21 C -0.198 4.198 22 O -0.228 6.228 23 C 0.054 3.946 24 C -0.151 4.151 25 C -0.126 4.126 26 C -0.151 4.151 27 C -0.136 4.136 28 C -0.020 4.020 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.244 0.756 34 H 0.187 0.813 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.245 4.972 20.571 21.199 hybrid contribution 0.716 -1.738 1.028 2.143 sum 1.961 3.233 21.598 21.927 Atomic orbital electron populations 1.22427 0.98388 1.01467 0.99638 1.19483 0.90880 0.94894 0.81720 0.92732 1.22135 1.40943 1.11538 0.90714 0.91630 1.25728 0.96136 1.03570 0.91452 1.70822 1.35834 1.16349 1.30241 0.83915 0.76515 0.75352 0.76242 1.20647 1.19988 1.21224 1.46273 1.60535 1.14778 1.08594 1.19666 0.80572 0.87165 0.84550 1.90367 1.51778 1.15437 1.83465 1.20700 0.78887 0.86803 0.84092 1.90564 1.46948 1.15817 1.84055 1.45481 1.61449 1.11852 1.06613 1.23985 0.98422 0.78683 1.07996 1.22833 0.99285 0.93882 0.82320 0.90574 1.21735 1.03106 0.91277 1.03725 1.86011 1.89169 1.16173 1.31433 1.18583 0.99487 0.82200 0.94327 1.20383 1.03378 0.94427 0.96955 1.20955 1.00144 0.92762 0.98750 1.21078 1.01065 1.00140 0.92806 1.21967 0.98916 0.92165 1.00527 1.18123 1.04097 0.92762 0.86988 0.92676 0.94593 0.92545 0.91916 0.75636 0.81310 0.89702 0.91014 0.89504 0.91171 0.84922 0.85416 0.85454 0.81500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 9.07 37.16 0.34 -3.03 16 2 C 0.23 5.28 2.14 -69.08 -0.15 5.13 16 3 H 0.05 1.31 6.11 -51.93 -0.32 0.99 16 4 C -0.62 -16.13 9.10 -34.44 -0.31 -16.44 16 5 H 0.07 1.82 7.95 -52.48 -0.42 1.40 16 6 C 0.04 1.03 5.43 -17.82 -0.10 0.93 16 7 N -0.90 -26.27 13.70 55.43 0.76 -25.51 16 8 Si 1.05 24.10 25.30 -169.99 -4.30 19.80 16 9 H -0.28 -6.06 6.78 56.52 0.38 -5.67 16 10 H -0.27 -5.93 6.38 56.52 0.36 -5.57 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.65 -13.05 5.06 -55.40 -0.28 -13.33 16 13 C 0.50 9.24 7.78 -11.64 -0.09 9.15 16 14 O -0.53 -10.03 12.70 5.48 0.07 -9.96 16 15 C 0.51 8.68 7.69 -11.64 -0.09 8.59 16 16 O -0.50 -8.91 13.24 5.46 0.07 -8.84 16 17 N -0.53 -8.12 3.01 -113.11 -0.34 -8.46 16 18 C 0.03 0.39 5.47 -3.53 -0.02 0.37 16 19 C 0.07 0.84 3.56 -26.65 -0.10 0.75 16 20 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 21 C -0.14 -1.18 9.59 37.16 0.36 -0.83 16 22 O -0.31 -4.03 9.97 -19.38 -0.19 -4.22 16 23 C 0.10 1.36 6.52 -39.02 -0.25 1.11 16 24 C -0.13 -1.49 9.97 -39.42 -0.39 -1.88 16 25 C -0.11 -1.09 10.03 -39.57 -0.40 -1.48 16 26 C -0.13 -1.51 10.04 -39.56 -0.40 -1.90 16 27 C -0.12 -1.65 8.98 -39.43 -0.35 -2.01 16 28 C 0.07 1.10 6.33 -83.44 -0.53 0.57 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.18 4.35 -51.93 -0.23 0.96 16 32 H 0.27 7.85 8.72 -40.82 -0.36 7.50 16 33 H 0.41 7.82 8.00 -40.82 -0.33 7.50 16 34 H 0.17 2.41 4.40 -54.90 -0.24 2.16 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.17 2.58 5.02 -53.05 -0.27 2.32 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -29.59 340.66 -6.80 -36.39 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.23 Total: 9.96 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -2.48 Total: -0.95 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.14 Total: -47.30 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.05 Total: -23.02 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -4.30 Total: 19.80 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.59 -6.80 -36.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276096722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.701 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds