Wall clock time and date at job start Tue Mar 31 2020 12:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47291 * 2 1 4 4 C 1.50698 * 109.47030 * 239.99695 * 2 1 3 5 5 H 1.08007 * 119.99979 * 244.71316 * 4 2 1 6 6 C 1.37873 * 119.99926 * 64.71259 * 4 2 1 7 7 N 1.31521 * 119.99967 * 186.14830 * 6 4 2 8 8 Si 1.86801 * 120.00197 * 5.87523 * 6 4 2 9 9 H 1.48504 * 109.46982 * 270.27389 * 8 6 4 10 10 H 1.48493 * 109.46972 * 30.27396 * 8 6 4 11 11 H 1.48499 * 109.46962 * 150.27578 * 8 6 4 12 12 N 1.46500 * 109.46711 * 119.99835 * 2 1 3 13 13 C 1.34777 * 119.99879 * 274.99357 * 12 2 1 14 14 O 1.21365 * 119.99942 * 0.02562 * 13 12 2 15 15 C 1.49336 * 119.99961 * 180.02562 * 13 12 2 16 16 O 1.21391 * 120.00067 * 1.49316 * 15 13 12 17 17 N 1.34777 * 119.99956 * 181.48384 * 15 13 12 18 18 C 1.47298 * 121.14381 * 358.72794 * 17 15 13 19 19 C 1.53147 * 107.79572 * 221.87589 * 18 17 15 20 20 H 1.08999 * 109.40829 * 61.87900 * 19 18 17 21 21 C 1.53001 * 109.74868 * 182.14804 * 19 18 17 22 22 O 1.42960 * 108.91323 * 302.11743 * 19 18 17 23 23 C 1.35885 * 117.74755 * 49.30511 * 22 19 18 24 24 C 1.38703 * 119.66467 * 159.92177 * 23 22 19 25 25 C 1.38200 * 120.05097 * 179.69333 * 24 23 22 26 26 C 1.38303 * 120.31232 * 359.97438 * 25 24 23 27 27 C 1.38227 * 120.07252 * 0.07582 * 26 25 24 28 28 C 1.38658 * 119.87138 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47103 * 174.83733 * 1 2 3 30 30 H 1.08994 * 109.47115 * 294.83321 * 1 2 3 31 31 H 1.09002 * 109.46935 * 54.83411 * 1 2 3 32 32 H 0.97004 * 119.99954 * 354.69581 * 7 6 4 33 33 H 0.97003 * 120.00301 * 95.00514 * 12 2 1 34 34 H 1.08991 * 109.83515 * 341.48976 * 18 17 15 35 35 H 1.09000 * 109.83102 * 102.44744 * 18 17 15 36 36 H 1.09000 * 109.46765 * 179.55600 * 21 19 18 37 37 H 1.08994 * 109.47195 * 299.55532 * 21 19 18 38 38 H 1.08997 * 109.46743 * 59.56275 * 21 19 18 39 39 H 1.08000 * 119.97639 * 359.67566 * 24 23 22 40 40 H 1.07997 * 119.84791 * 179.97438 * 25 24 23 41 41 H 1.07999 * 119.96551 * 180.08805 * 26 25 24 42 42 H 1.08000 * 120.06853 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5890 -1.6309 -1.1331 6 6 1.7812 -0.1855 -2.4803 7 7 2.1124 -0.8641 -3.5572 8 14 0.9637 1.4861 -2.6444 9 1 -0.5107 1.3139 -2.6871 10 1 1.3298 2.3324 -1.4805 11 1 1.4222 2.1405 -3.8961 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8581 1.1593 2.4116 15 6 2.6453 -0.7220 3.5764 16 8 2.9600 -1.8928 3.5154 17 7 2.7457 -0.0572 4.7445 18 6 2.3974 1.3708 4.8407 19 6 3.4553 2.0529 5.7131 20 1 4.4314 1.9614 5.2368 21 6 3.1063 3.5323 5.8871 22 8 3.4841 1.4136 6.9915 23 6 3.5590 0.0571 7.0190 24 6 4.0029 -0.5828 8.1667 25 6 4.0763 -1.9623 8.2056 26 6 3.7080 -2.7122 7.1034 27 6 3.2653 -2.0838 5.9546 28 6 3.1906 -0.7000 5.9094 29 1 -0.3633 -1.0235 -0.0925 30 1 -0.3633 0.4316 0.9326 31 1 -0.3633 0.5919 -0.8401 32 1 2.6020 -1.6974 -3.4739 33 1 2.2490 -1.6318 1.1527 34 1 2.3936 1.8183 3.8469 35 1 1.4155 1.4817 5.3009 36 1 3.8576 4.0114 6.5150 37 1 3.0849 4.0178 4.9115 38 1 2.1278 3.6217 6.3591 39 1 4.2917 -0.0025 9.0306 40 1 4.4228 -2.4571 9.1008 41 1 3.7662 -3.7900 7.1405 42 1 2.9782 -2.6695 5.0938 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276096722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:17 Heat of formation + Delta-G solvation = -71.117809 kcal Electronic energy + Delta-G solvation = -27005.774912 eV Core-core repulsion = 23144.512286 eV Total energy + Delta-G solvation = -3861.262625 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.85889 -41.21269 -39.84682 -38.65139 -37.51889 -36.48974 -34.54102 -33.67256 -31.91277 -31.52963 -30.23551 -27.95088 -26.99251 -26.26225 -24.42057 -23.84166 -22.51310 -21.57443 -21.31717 -19.96102 -19.44704 -18.68597 -18.63015 -17.74705 -17.24414 -17.16367 -16.90689 -16.22106 -15.95237 -15.61895 -15.29326 -15.15434 -14.93992 -14.88197 -14.66135 -14.39881 -14.33632 -14.05105 -13.65931 -13.46560 -13.42888 -13.14690 -12.89988 -12.73960 -12.48369 -12.36336 -12.08255 -11.96892 -11.77281 -11.67060 -11.29453 -11.02392 -10.73548 -10.33557 -10.23849 -9.58583 -9.00076 -8.83988 -6.53956 -0.23982 0.32087 0.52852 0.93533 1.43928 1.53670 1.69711 1.90257 2.01605 2.26526 2.41554 2.74830 3.00489 3.09473 3.33166 3.64411 3.78793 3.86965 4.07821 4.25612 4.27055 4.32619 4.38753 4.44205 4.49568 4.59693 4.62971 4.70646 4.84017 4.91955 4.93531 4.98754 5.17924 5.23061 5.28145 5.34256 5.39573 5.46810 5.51433 5.70912 5.80861 5.92446 6.14112 6.30403 6.40669 6.51794 6.82996 7.25970 8.56224 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.003492 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.026023 B = 8015.290579 C = 9059.813797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.237 3.763 3 H 0.047 0.953 4 C -0.613 4.613 5 H 0.036 0.964 6 C -0.010 4.010 7 N -0.932 5.932 8 Si 1.084 2.916 9 H -0.255 1.255 10 H -0.253 1.253 11 H -0.288 1.288 12 N -0.663 5.663 13 C 0.505 3.495 14 O -0.532 6.532 15 C 0.509 3.491 16 O -0.515 6.515 17 N -0.525 5.525 18 C 0.028 3.972 19 C 0.074 3.926 20 H 0.070 0.930 21 C -0.135 4.135 22 O -0.315 6.315 23 C 0.088 3.912 24 C -0.131 4.131 25 C -0.092 4.092 26 C -0.133 4.133 27 C -0.137 4.137 28 C 0.043 3.957 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.256 0.744 33 H 0.409 0.591 34 H 0.161 0.839 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.158 0.842 40 H 0.167 0.833 41 H 0.150 0.850 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.642 4.907 24.801 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.134 3.866 3 H 0.065 0.935 4 C -0.651 4.651 5 H 0.054 0.946 6 C -0.210 4.210 7 N -0.567 5.567 8 Si 0.906 3.094 9 H -0.181 1.181 10 H -0.178 1.178 11 H -0.215 1.215 12 N -0.311 5.311 13 C 0.286 3.714 14 O -0.413 6.413 15 C 0.294 3.706 16 O -0.392 6.392 17 N -0.250 5.250 18 C -0.092 4.092 19 C 0.018 3.982 20 H 0.088 0.912 21 C -0.192 4.192 22 O -0.230 6.230 23 C 0.041 3.959 24 C -0.150 4.150 25 C -0.111 4.111 26 C -0.151 4.151 27 C -0.156 4.156 28 C -0.050 4.050 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.245 0.755 34 H 0.177 0.823 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.176 0.824 40 H 0.185 0.815 41 H 0.168 0.832 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.964 6.327 23.734 24.582 hybrid contribution 0.902 -2.239 0.237 2.426 sum 1.866 4.088 23.971 24.389 Atomic orbital electron populations 1.22324 0.96565 1.01759 1.00740 1.19222 0.92153 0.93937 0.81304 0.93485 1.22309 1.39818 1.10469 0.92531 0.94572 1.27061 0.96341 1.06247 0.91301 1.70939 1.37852 1.16543 1.31372 0.83536 0.77230 0.71806 0.76847 1.18066 1.17784 1.21487 1.46105 1.61545 1.14854 1.08612 1.19861 0.79931 0.87032 0.84580 1.90382 1.51555 1.15538 1.83800 1.20319 0.79440 0.86612 0.84232 1.90573 1.48030 1.16271 1.84316 1.45504 1.60615 1.12549 1.06292 1.24032 0.99563 0.77719 1.07864 1.22955 0.98343 0.95282 0.81645 0.91156 1.21764 1.03788 0.88988 1.04703 1.86014 1.89171 1.15949 1.31884 1.18899 0.99889 0.82483 0.94622 1.20814 1.02189 0.95209 0.96806 1.21410 0.97931 0.92358 0.99376 1.21394 1.00037 1.01513 0.92170 1.21944 1.00309 0.92114 1.01255 1.18367 1.06109 0.93320 0.87203 0.92719 0.92688 0.92302 0.93422 0.75503 0.82290 0.89030 0.89740 0.88489 0.90578 0.82417 0.81509 0.83190 0.83435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.29 9.07 71.98 0.65 -5.64 16 2 C 0.24 10.72 2.14 44.25 0.09 10.81 16 3 H 0.05 2.22 6.11 -2.39 -0.01 2.20 16 4 C -0.61 -32.86 9.10 25.60 0.23 -32.62 16 5 H 0.04 2.10 7.95 -2.91 -0.02 2.08 16 6 C -0.01 -0.54 5.43 84.65 0.46 -0.08 16 7 N -0.93 -55.94 13.70 21.45 0.29 -55.64 16 8 Si 1.08 47.68 25.30 68.60 1.74 49.42 16 9 H -0.26 -10.23 6.78 99.48 0.67 -9.55 16 10 H -0.25 -10.23 6.38 99.48 0.63 -9.59 16 11 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 12 N -0.66 -26.78 5.06 -447.54 -2.27 -29.05 16 13 C 0.51 18.72 7.78 87.23 0.68 19.40 16 14 O -0.53 -19.82 12.70 -3.29 -0.04 -19.86 16 15 C 0.51 17.65 7.69 87.23 0.67 18.32 16 16 O -0.52 -19.03 13.24 -3.37 -0.04 -19.08 16 17 N -0.53 -16.12 3.01 -630.12 -1.90 -18.02 16 18 C 0.03 0.73 5.47 86.28 0.47 1.20 16 19 C 0.07 1.61 3.56 30.64 0.11 1.72 16 20 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 21 C -0.14 -1.97 9.59 71.98 0.69 -1.28 16 22 O -0.32 -7.55 9.97 -92.26 -0.92 -8.47 16 23 C 0.09 2.23 6.52 22.63 0.15 2.38 16 24 C -0.13 -2.54 9.97 22.37 0.22 -2.32 16 25 C -0.09 -1.53 10.03 22.28 0.22 -1.31 16 26 C -0.13 -2.74 10.04 22.28 0.22 -2.51 16 27 C -0.14 -3.84 8.98 22.37 0.20 -3.64 16 28 C 0.04 1.26 6.33 38.14 0.24 1.51 16 29 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.06 2.34 4.35 -2.39 -0.01 2.33 16 32 H 0.26 15.58 8.72 -92.71 -0.81 14.78 16 33 H 0.41 16.26 8.00 -92.71 -0.74 15.51 16 34 H 0.16 4.44 4.40 -49.42 -0.22 4.22 16 35 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 40 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 42 H 0.15 4.71 5.02 -11.83 -0.06 4.66 16 Total: -1.00 -65.22 340.66 2.12 -63.10 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -0.07 Total: 31.67 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 5.32 Total: 5.92 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -3.87 Total: -102.71 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -1.01 Total: -47.40 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.74 Total: 49.42 kcal Total: -65.22 2.12 -63.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276096722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.013 kcal (2) G-P(sol) polarization free energy of solvation -65.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds