Wall clock time and date at job start Tue Mar 31 2020 12:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47397 * 2 1 4 4 C 1.50706 * 109.46959 * 239.99843 * 2 1 3 5 5 H 1.07997 * 120.00164 * 245.31634 * 4 2 1 6 6 C 1.37877 * 119.99801 * 65.32033 * 4 2 1 7 7 N 1.31514 * 119.99837 * 5.15631 * 6 4 2 8 8 Si 1.86795 * 119.99942 * 185.15734 * 6 4 2 9 9 H 1.48497 * 109.47266 * 94.99980 * 8 6 4 10 10 H 1.48504 * 109.47311 * 214.99799 * 8 6 4 11 11 H 1.48498 * 109.47371 * 334.99725 * 8 6 4 12 12 N 1.46508 * 109.47375 * 120.00172 * 2 1 3 13 13 C 1.34774 * 119.99690 * 275.00012 * 12 2 1 14 14 O 1.21358 * 120.00055 * 359.97438 * 13 12 2 15 15 C 1.49331 * 119.99918 * 179.97438 * 13 12 2 16 16 O 1.21389 * 119.99956 * 6.17934 * 15 13 12 17 17 N 1.34770 * 120.00425 * 186.17621 * 15 13 12 18 18 C 1.47299 * 121.14582 * 359.22585 * 17 15 13 19 19 C 1.53528 * 107.59050 * 137.97777 * 18 17 15 20 20 H 1.09003 * 109.58189 * 298.34031 * 19 18 17 21 21 C 1.53005 * 109.57823 * 177.94127 * 19 18 17 22 22 O 1.42961 * 108.81156 * 58.14477 * 19 18 17 23 23 C 1.35878 * 117.74995 * 310.59142 * 22 19 18 24 24 C 1.38712 * 119.66954 * 200.18632 * 23 22 19 25 25 C 1.38201 * 120.05305 * 180.20614 * 24 23 22 26 26 C 1.38303 * 120.30890 * 0.05997 * 25 24 23 27 27 C 1.38221 * 120.07619 * 359.93862 * 26 25 24 28 28 C 1.38653 * 119.86897 * 0.21896 * 27 26 25 29 29 H 1.09000 * 109.47223 * 294.96572 * 1 2 3 30 30 H 1.08998 * 109.47280 * 54.97253 * 1 2 3 31 31 H 1.08997 * 109.47207 * 174.97380 * 1 2 3 32 32 H 0.96998 * 119.99698 * 179.97438 * 7 6 4 33 33 H 0.96995 * 119.99959 * 94.99657 * 12 2 1 34 34 H 1.08996 * 109.83526 * 18.45303 * 18 17 15 35 35 H 1.09004 * 109.83121 * 257.49692 * 18 17 15 36 36 H 1.08996 * 109.47050 * 300.67134 * 21 19 18 37 37 H 1.08996 * 109.47356 * 60.67728 * 21 19 18 38 38 H 1.09003 * 109.47027 * 180.67911 * 21 19 18 39 39 H 1.08001 * 119.96850 * 0.22735 * 24 23 22 40 40 H 1.07992 * 119.84325 * 180.02562 * 25 24 23 41 41 H 1.08005 * 119.96031 * 179.91775 * 26 25 24 42 42 H 1.08000 * 120.06707 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5805 -1.6359 -1.1338 6 6 1.7920 -0.1789 -2.4798 7 7 1.2143 0.9971 -2.5940 8 14 2.2868 -1.1291 -4.0100 9 1 1.1238 -1.9072 -4.5072 10 1 2.7319 -0.1786 -5.0606 11 1 3.3981 -2.0568 -3.6789 12 7 2.0184 -0.6907 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8589 1.1593 2.4115 15 6 2.6444 -0.7224 3.5765 16 8 3.0385 -1.8678 3.4977 17 7 2.6557 -0.0862 4.7646 18 6 2.1993 1.3091 4.8860 19 6 1.3586 1.4124 6.1665 20 1 0.4886 0.7608 6.0859 21 6 0.9023 2.8593 6.3648 22 8 2.1602 1.0062 7.2783 23 6 2.8380 -0.1669 7.1746 24 6 3.2746 -0.8115 8.3226 25 6 3.9683 -2.0029 8.2261 26 6 4.2323 -2.5585 6.9874 27 6 3.8014 -1.9239 5.8375 28 6 3.1078 -0.7267 5.9281 29 1 -0.3633 0.4337 0.9316 30 1 -0.3634 0.5898 -0.8415 31 1 -0.3633 -1.0237 -0.0900 32 1 1.0456 1.3712 -3.4729 33 1 2.2490 -1.6318 1.1526 34 1 1.5912 1.5758 4.0217 35 1 3.0596 1.9750 4.9536 36 1 1.7747 3.5085 6.4390 37 1 0.2913 3.1672 5.5163 38 1 0.3158 2.9330 7.2806 39 1 3.0719 -0.3821 9.2926 40 1 4.3063 -2.5020 9.1221 41 1 4.7760 -3.4891 6.9185 42 1 4.0080 -2.3577 4.8703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276096724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:22 Heat of formation + Delta-G solvation = -53.811136 kcal Electronic energy + Delta-G solvation = -26916.290559 eV Core-core repulsion = 23055.778408 eV Total energy + Delta-G solvation = -3860.512152 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61331 -39.81547 -38.37926 -37.58955 -35.95364 -34.84125 -32.72918 -32.50789 -30.60826 -29.45583 -29.09664 -26.83215 -25.40463 -24.91016 -23.23110 -22.84957 -21.12990 -20.25959 -19.76411 -18.44113 -17.81975 -17.48418 -16.42018 -16.22395 -15.88153 -15.83061 -15.31497 -15.17243 -14.61332 -14.24095 -14.02710 -13.97914 -13.79010 -13.43662 -13.17288 -13.01970 -12.62475 -12.56558 -12.28894 -11.99016 -11.92084 -11.78510 -11.35503 -11.20603 -11.08856 -11.03276 -10.84669 -10.58420 -10.49795 -10.33714 -10.15064 -9.25276 -8.84613 -8.69018 -8.55855 -8.29112 -7.90290 -6.25916 -4.33451 1.01403 1.32033 1.83040 2.30381 3.04795 3.19736 3.27289 3.29920 3.42737 3.66550 3.78199 4.25975 4.33821 4.62990 4.74603 4.80273 4.86286 4.99520 5.09236 5.16505 5.25484 5.36148 5.41195 5.46923 5.53501 5.75953 5.89622 5.90822 6.00550 6.18666 6.35896 6.47364 6.58840 6.68536 6.77543 6.86497 6.95921 7.09503 7.20581 7.30216 7.52723 7.59965 7.75916 7.87833 8.29653 8.49001 8.75271 9.33276 10.82392 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.003293 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.087681 B = 8499.919800 C = 9630.536407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.259 3.741 3 H 0.062 0.938 4 C -0.540 4.540 5 H 0.065 0.935 6 C 0.070 3.930 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.661 5.661 13 C 0.499 3.501 14 O -0.528 6.528 15 C 0.510 3.490 16 O -0.502 6.502 17 N -0.530 5.530 18 C 0.034 3.966 19 C 0.073 3.927 20 H 0.076 0.924 21 C -0.141 4.141 22 O -0.314 6.314 23 C 0.100 3.900 24 C -0.133 4.133 25 C -0.108 4.108 26 C -0.133 4.133 27 C -0.118 4.118 28 C 0.075 3.925 29 H 0.019 0.981 30 H 0.080 0.920 31 H 0.034 0.966 32 H 0.266 0.734 33 H 0.403 0.597 34 H 0.168 0.832 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 -1.144 19.022 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.159 3.841 3 H 0.079 0.921 4 C -0.578 4.578 5 H 0.083 0.917 6 C -0.134 4.134 7 N -0.518 5.518 8 Si 0.730 3.270 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.309 5.309 13 C 0.278 3.722 14 O -0.409 6.409 15 C 0.295 3.705 16 O -0.377 6.377 17 N -0.255 5.255 18 C -0.086 4.086 19 C 0.016 3.984 20 H 0.094 0.906 21 C -0.199 4.199 22 O -0.228 6.228 23 C 0.053 3.947 24 C -0.152 4.152 25 C -0.127 4.127 26 C -0.151 4.151 27 C -0.137 4.137 28 C -0.019 4.019 29 H 0.038 0.962 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.238 0.762 34 H 0.184 0.816 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.150 0.850 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.235 -0.626 18.857 18.907 hybrid contribution 0.363 -0.933 -0.943 1.375 sum 1.598 -1.558 17.913 18.052 Atomic orbital electron populations 1.22038 0.97937 1.00130 1.00002 1.19048 0.91182 0.94620 0.79275 0.92070 1.21160 1.37421 1.09151 0.90094 0.91669 1.24876 0.94700 0.94731 0.99120 1.69942 1.41706 1.15784 1.24417 0.86397 0.78872 0.79633 0.82055 1.20440 1.21003 1.19668 1.46544 1.60519 1.14598 1.09191 1.19587 0.80839 0.87194 0.84538 1.90415 1.51979 1.15469 1.83006 1.20861 0.79069 0.86203 0.84369 1.90534 1.45132 1.17230 1.84766 1.45506 1.59731 1.14373 1.05864 1.23988 1.01840 0.80185 1.02634 1.22926 0.92494 0.98314 0.84629 0.90570 1.21740 1.02385 0.92245 1.03514 1.86005 1.59665 1.35187 1.41962 1.18586 0.96494 0.87727 0.91858 1.20376 1.02719 0.95797 0.96287 1.20944 0.98810 0.95000 0.97968 1.21078 1.01534 1.00659 0.91865 1.22031 0.96055 0.93609 1.02013 1.18149 1.02110 0.96661 0.84965 0.96216 0.90097 0.94672 0.92395 0.76175 0.81605 0.89586 0.91144 0.89495 0.91082 0.84982 0.85487 0.85509 0.81318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.26 37.16 0.34 -2.91 16 2 C 0.26 6.22 2.43 -69.08 -0.17 6.05 16 3 H 0.06 1.66 7.56 -51.93 -0.39 1.27 16 4 C -0.54 -13.83 8.67 -34.44 -0.30 -14.13 16 5 H 0.07 1.62 7.72 -52.49 -0.41 1.22 16 6 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 7 N -0.88 -23.91 11.98 55.43 0.66 -23.25 16 8 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 N -0.66 -13.56 5.06 -55.40 -0.28 -13.84 16 13 C 0.50 9.63 7.76 -11.64 -0.09 9.54 16 14 O -0.53 -10.70 12.75 5.49 0.07 -10.63 16 15 C 0.51 8.94 7.70 -11.64 -0.09 8.85 16 16 O -0.50 -9.10 13.22 5.46 0.07 -9.03 16 17 N -0.53 -8.42 3.00 -112.90 -0.34 -8.76 16 18 C 0.03 0.48 5.44 -3.33 -0.02 0.46 16 19 C 0.07 0.87 3.59 -26.46 -0.09 0.77 16 20 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 21 C -0.14 -1.26 9.58 37.16 0.36 -0.90 16 22 O -0.31 -4.16 9.97 -19.36 -0.19 -4.35 16 23 C 0.10 1.39 6.52 -39.02 -0.25 1.14 16 24 C -0.13 -1.53 9.97 -39.42 -0.39 -1.92 16 25 C -0.11 -1.13 10.03 -39.57 -0.40 -1.53 16 26 C -0.13 -1.55 10.04 -39.56 -0.40 -1.95 16 27 C -0.12 -1.71 8.99 -39.43 -0.35 -2.06 16 28 C 0.08 1.15 6.34 -83.44 -0.53 0.62 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 2.00 6.83 -51.93 -0.35 1.64 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.40 7.73 8.01 -40.82 -0.33 7.41 16 34 H 0.17 2.50 4.48 -54.44 -0.24 2.26 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 40 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 42 H 0.17 2.67 4.98 -53.24 -0.27 2.41 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -28.46 347.53 -7.62 -36.08 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.35 Total: 9.64 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -2.48 Total: 3.76 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.04 Total: -45.84 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.46 -7.62 -36.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276096724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.728 kcal (2) G-P(sol) polarization free energy of solvation -28.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds