Wall clock time and date at job start Tue Mar 31 2020 12:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47397 * 2 1 4 4 C 1.50706 * 109.46959 * 239.99843 * 2 1 3 5 5 H 1.07997 * 120.00164 * 245.31634 * 4 2 1 6 6 C 1.37877 * 119.99801 * 65.32033 * 4 2 1 7 7 N 1.31514 * 119.99837 * 5.15631 * 6 4 2 8 8 Si 1.86795 * 119.99942 * 185.15734 * 6 4 2 9 9 H 1.48497 * 109.47266 * 94.99980 * 8 6 4 10 10 H 1.48504 * 109.47311 * 214.99799 * 8 6 4 11 11 H 1.48498 * 109.47371 * 334.99725 * 8 6 4 12 12 N 1.46508 * 109.47375 * 120.00172 * 2 1 3 13 13 C 1.34774 * 119.99690 * 275.00012 * 12 2 1 14 14 O 1.21358 * 120.00055 * 359.97438 * 13 12 2 15 15 C 1.49331 * 119.99918 * 179.97438 * 13 12 2 16 16 O 1.21389 * 119.99956 * 6.17934 * 15 13 12 17 17 N 1.34770 * 120.00425 * 186.17621 * 15 13 12 18 18 C 1.47299 * 121.14582 * 359.22585 * 17 15 13 19 19 C 1.53528 * 107.59050 * 137.97777 * 18 17 15 20 20 H 1.09003 * 109.58189 * 298.34031 * 19 18 17 21 21 C 1.53005 * 109.57823 * 177.94127 * 19 18 17 22 22 O 1.42961 * 108.81156 * 58.14477 * 19 18 17 23 23 C 1.35878 * 117.74995 * 310.59142 * 22 19 18 24 24 C 1.38712 * 119.66954 * 200.18632 * 23 22 19 25 25 C 1.38201 * 120.05305 * 180.20614 * 24 23 22 26 26 C 1.38303 * 120.30890 * 0.05997 * 25 24 23 27 27 C 1.38221 * 120.07619 * 359.93862 * 26 25 24 28 28 C 1.38653 * 119.86897 * 0.21896 * 27 26 25 29 29 H 1.09000 * 109.47223 * 294.96572 * 1 2 3 30 30 H 1.08998 * 109.47280 * 54.97253 * 1 2 3 31 31 H 1.08997 * 109.47207 * 174.97380 * 1 2 3 32 32 H 0.96998 * 119.99698 * 179.97438 * 7 6 4 33 33 H 0.96995 * 119.99959 * 94.99657 * 12 2 1 34 34 H 1.08996 * 109.83526 * 18.45303 * 18 17 15 35 35 H 1.09004 * 109.83121 * 257.49692 * 18 17 15 36 36 H 1.08996 * 109.47050 * 300.67134 * 21 19 18 37 37 H 1.08996 * 109.47356 * 60.67728 * 21 19 18 38 38 H 1.09003 * 109.47027 * 180.67911 * 21 19 18 39 39 H 1.08001 * 119.96850 * 0.22735 * 24 23 22 40 40 H 1.07992 * 119.84325 * 180.02562 * 25 24 23 41 41 H 1.08005 * 119.96031 * 179.91775 * 26 25 24 42 42 H 1.08000 * 120.06707 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5805 -1.6359 -1.1338 6 6 1.7920 -0.1789 -2.4798 7 7 1.2143 0.9971 -2.5940 8 14 2.2868 -1.1291 -4.0100 9 1 1.1238 -1.9072 -4.5072 10 1 2.7319 -0.1786 -5.0606 11 1 3.3981 -2.0568 -3.6789 12 7 2.0184 -0.6907 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8589 1.1593 2.4115 15 6 2.6444 -0.7224 3.5765 16 8 3.0385 -1.8678 3.4977 17 7 2.6557 -0.0862 4.7646 18 6 2.1993 1.3091 4.8860 19 6 1.3586 1.4124 6.1665 20 1 0.4886 0.7608 6.0859 21 6 0.9023 2.8593 6.3648 22 8 2.1602 1.0062 7.2783 23 6 2.8380 -0.1669 7.1746 24 6 3.2746 -0.8115 8.3226 25 6 3.9683 -2.0029 8.2261 26 6 4.2323 -2.5585 6.9874 27 6 3.8014 -1.9239 5.8375 28 6 3.1078 -0.7267 5.9281 29 1 -0.3633 0.4337 0.9316 30 1 -0.3634 0.5898 -0.8415 31 1 -0.3633 -1.0237 -0.0900 32 1 1.0456 1.3712 -3.4729 33 1 2.2490 -1.6318 1.1526 34 1 1.5912 1.5758 4.0217 35 1 3.0596 1.9750 4.9536 36 1 1.7747 3.5085 6.4390 37 1 0.2913 3.1672 5.5163 38 1 0.3158 2.9330 7.2806 39 1 3.0719 -0.3821 9.2926 40 1 4.3063 -2.5020 9.1221 41 1 4.7760 -3.4891 6.9185 42 1 4.0080 -2.3577 4.8703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276096724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:21 Heat of formation + Delta-G solvation = -71.421201 kcal Electronic energy + Delta-G solvation = -26917.054189 eV Core-core repulsion = 23055.778408 eV Total energy + Delta-G solvation = -3861.275781 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.81162 -41.13679 -39.76891 -38.61412 -37.39640 -36.40528 -34.38266 -33.64519 -31.65690 -31.16516 -30.18762 -27.90897 -27.36019 -26.24989 -24.42419 -23.82046 -22.65954 -21.54282 -21.23503 -19.62244 -19.16695 -18.66977 -18.01087 -17.52623 -17.27740 -17.15538 -16.90745 -16.25870 -16.08580 -15.60783 -15.30726 -15.15233 -14.88887 -14.80219 -14.47347 -14.30852 -14.06531 -13.84533 -13.47900 -13.18265 -13.06419 -12.95383 -12.87173 -12.74937 -12.68488 -12.41155 -12.31945 -12.15778 -12.01283 -11.74339 -11.27318 -11.19452 -10.66430 -10.24068 -10.06537 -9.56139 -8.97418 -8.24616 -6.39060 -0.18307 0.34699 0.58006 0.99589 1.44036 1.45463 1.55795 1.96709 2.05073 2.29159 2.42995 2.77522 3.08670 3.21483 3.34316 3.67380 3.79557 3.88399 4.10416 4.27473 4.29125 4.35856 4.46532 4.54484 4.66758 4.69541 4.82151 4.86409 4.94283 4.95655 5.00705 5.18593 5.24832 5.30145 5.34673 5.44023 5.53076 5.57401 5.68940 5.77090 5.83472 5.93722 6.22347 6.35570 6.60626 6.67088 6.98069 7.32204 8.83953 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.003293 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.087681 B = 8499.919800 C = 9630.536407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.267 3.733 3 H 0.023 0.977 4 C -0.555 4.555 5 H 0.070 0.930 6 C 0.023 3.977 7 N -0.912 5.912 8 Si 0.968 3.032 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.267 1.267 12 N -0.664 5.664 13 C 0.500 3.500 14 O -0.540 6.540 15 C 0.511 3.489 16 O -0.513 6.513 17 N -0.527 5.527 18 C 0.033 3.967 19 C 0.076 3.924 20 H 0.074 0.926 21 C -0.136 4.136 22 O -0.316 6.316 23 C 0.087 3.913 24 C -0.131 4.131 25 C -0.093 4.093 26 C -0.132 4.132 27 C -0.137 4.137 28 C 0.043 3.957 29 H 0.028 0.972 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.268 0.732 33 H 0.410 0.590 34 H 0.154 0.846 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.158 0.842 40 H 0.168 0.832 41 H 0.151 0.849 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 -2.182 21.210 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.165 3.835 3 H 0.041 0.959 4 C -0.593 4.593 5 H 0.088 0.912 6 C -0.178 4.178 7 N -0.550 5.550 8 Si 0.793 3.207 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.191 1.191 12 N -0.313 5.313 13 C 0.281 3.719 14 O -0.421 6.421 15 C 0.296 3.704 16 O -0.389 6.389 17 N -0.251 5.251 18 C -0.088 4.088 19 C 0.019 3.981 20 H 0.092 0.908 21 C -0.193 4.193 22 O -0.230 6.230 23 C 0.040 3.960 24 C -0.150 4.150 25 C -0.111 4.111 26 C -0.150 4.150 27 C -0.157 4.157 28 C -0.050 4.050 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.246 0.754 34 H 0.171 0.829 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.175 0.825 40 H 0.185 0.815 41 H 0.169 0.831 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.698 -1.662 21.094 21.227 hybrid contribution 0.268 -0.598 -1.460 1.600 sum 1.966 -2.260 19.634 19.861 Atomic orbital electron populations 1.21860 0.97184 1.00284 0.99512 1.18683 0.91694 0.92761 0.80338 0.95938 1.21474 1.37507 1.09384 0.90909 0.91229 1.25689 0.94656 0.95469 1.02012 1.70059 1.42667 1.17125 1.25116 0.85383 0.78723 0.78294 0.78285 1.19720 1.20960 1.19086 1.46297 1.61287 1.14831 1.08842 1.19915 0.80132 0.87045 0.84857 1.90430 1.52095 1.16070 1.83493 1.20346 0.79640 0.86047 0.84383 1.90542 1.45962 1.17457 1.84976 1.45502 1.59058 1.14869 1.05640 1.23996 1.02012 0.79379 1.03377 1.23022 0.91679 1.00080 0.83287 0.90805 1.21767 1.02817 0.90106 1.04637 1.86006 1.59766 1.35130 1.42144 1.18915 0.97001 0.88087 0.92024 1.20809 1.01779 0.95894 0.96516 1.21410 0.96732 0.94161 0.98800 1.21401 1.00923 1.01258 0.91438 1.22002 0.97228 0.93984 1.02462 1.18405 1.03952 0.97642 0.84996 0.95300 0.92196 0.93744 0.92294 0.75405 0.82911 0.89393 0.90758 0.88679 0.89542 0.82456 0.81483 0.83085 0.83207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.06 9.26 71.98 0.67 -5.39 16 2 C 0.27 13.22 2.43 44.24 0.11 13.33 16 3 H 0.02 1.29 7.56 -2.39 -0.02 1.27 16 4 C -0.55 -28.82 8.67 25.60 0.22 -28.60 16 5 H 0.07 3.47 7.72 -2.91 -0.02 3.45 16 6 C 0.02 1.21 5.29 84.65 0.45 1.65 16 7 N -0.91 -50.44 11.98 21.45 0.26 -50.19 16 8 Si 0.97 41.36 29.54 68.60 2.03 43.39 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 12 N -0.66 -28.05 5.06 -447.55 -2.26 -30.32 16 13 C 0.50 19.97 7.76 87.23 0.68 20.65 16 14 O -0.54 -22.72 12.75 -3.27 -0.04 -22.76 16 15 C 0.51 18.49 7.70 87.23 0.67 19.16 16 16 O -0.51 -19.16 13.22 -3.37 -0.04 -19.20 16 17 N -0.53 -17.03 3.00 -629.44 -1.89 -18.92 16 18 C 0.03 0.92 5.44 86.40 0.47 1.39 16 19 C 0.08 1.75 3.59 30.77 0.11 1.86 16 20 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 21 C -0.14 -2.23 9.58 71.98 0.69 -1.54 16 22 O -0.32 -7.92 9.97 -92.18 -0.92 -8.84 16 23 C 0.09 2.28 6.52 22.63 0.15 2.42 16 24 C -0.13 -2.61 9.97 22.37 0.22 -2.39 16 25 C -0.09 -1.57 10.03 22.28 0.22 -1.35 16 26 C -0.13 -2.75 10.04 22.28 0.22 -2.53 16 27 C -0.14 -3.93 8.99 22.36 0.20 -3.73 16 28 C 0.04 1.31 6.34 38.14 0.24 1.55 16 29 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 3.04 6.83 -2.39 -0.02 3.02 16 31 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 33 H 0.41 16.11 8.01 -92.71 -0.74 15.36 16 34 H 0.15 4.76 4.48 -42.12 -0.19 4.57 16 35 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 41 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 42 H 0.15 4.86 4.98 -14.91 -0.07 4.78 16 Total: -1.00 -62.35 347.53 2.53 -59.82 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.08 Total: 30.53 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 5.32 Total: 16.49 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -3.90 Total: -99.43 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -1.01 Total: -50.80 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -62.35 2.53 -59.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276096724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.597 kcal (2) G-P(sol) polarization free energy of solvation -62.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds