Wall clock time and date at job start Tue Mar 31 2020 12:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47207 * 2 1 4 4 C 1.50696 * 109.47346 * 120.00134 * 2 1 3 5 5 H 1.07999 * 120.00084 * 119.99729 * 4 2 1 6 6 C 1.37880 * 119.99688 * 300.00175 * 4 2 1 7 7 N 1.31515 * 120.00219 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99822 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47064 * 90.00084 * 8 6 4 10 10 H 1.48499 * 109.47551 * 210.00089 * 8 6 4 11 11 H 1.48502 * 109.47177 * 330.00446 * 8 6 4 12 12 N 1.46497 * 109.47170 * 240.00569 * 2 1 3 13 13 C 1.34769 * 120.00527 * 85.00142 * 12 2 1 14 14 O 1.21368 * 120.00262 * 359.97438 * 13 12 2 15 15 C 1.49335 * 120.00261 * 180.02562 * 13 12 2 16 16 O 1.21391 * 119.99792 * 353.72581 * 15 13 12 17 17 N 1.34775 * 120.00001 * 173.72442 * 15 13 12 18 18 C 1.47293 * 121.14704 * 352.74260 * 17 15 13 19 19 C 1.53532 * 107.59532 * 222.24389 * 18 17 15 20 20 H 1.09002 * 109.58772 * 61.62674 * 19 18 17 21 21 C 1.53001 * 109.69852 * 181.97282 * 19 18 17 22 22 O 1.42958 * 108.79233 * 301.82994 * 19 18 17 23 23 C 1.35886 * 117.74615 * 49.44627 * 22 19 18 24 24 C 1.38705 * 119.67134 * 159.92250 * 23 22 19 25 25 C 1.38199 * 120.05351 * 179.65787 * 24 23 22 26 26 C 1.38299 * 120.31318 * 0.02562 * 25 24 23 27 27 C 1.38225 * 120.07217 * 0.03679 * 26 25 24 28 28 C 1.38655 * 119.87116 * 0.03491 * 27 26 25 29 29 H 1.09000 * 109.47339 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47470 * 299.99851 * 1 2 3 31 31 H 1.09009 * 109.47179 * 59.99856 * 1 2 3 32 32 H 0.96997 * 119.99643 * 180.02562 * 7 6 4 33 33 H 0.97006 * 119.99470 * 264.99383 * 12 2 1 34 34 H 1.08999 * 109.83475 * 341.76353 * 18 17 15 35 35 H 1.08998 * 109.83867 * 102.72664 * 18 17 15 36 36 H 1.09007 * 109.47181 * 179.37566 * 21 19 18 37 37 H 1.09000 * 109.46969 * 299.37348 * 21 19 18 38 38 H 1.08998 * 109.47452 * 59.37559 * 21 19 18 39 39 H 1.08000 * 119.96927 * 359.64183 * 24 23 22 40 40 H 1.08001 * 119.84300 * 179.97438 * 25 24 23 41 41 H 1.08000 * 119.96669 * 180.02562 * 26 25 24 42 42 H 1.07994 * 120.06583 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.6297 -0.5458 4.4123 10 1 1.3431 -0.9494 5.1120 11 1 2.4860 -2.5662 3.7118 12 7 2.0183 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8580 1.1594 -2.4118 15 6 2.6443 -0.7222 -3.5766 16 8 3.0400 -1.8671 -3.4975 17 7 2.6538 -0.0865 -4.7649 18 6 2.0362 1.2413 -4.9236 19 6 1.2698 1.2406 -6.2540 20 1 0.4843 0.4854 -6.2228 21 6 0.6476 2.6181 -6.4914 22 8 2.1831 0.9387 -7.3115 23 6 2.9932 -0.1415 -7.1586 24 6 3.5787 -0.7238 -8.2731 25 6 4.4097 -1.8183 -8.1261 26 6 4.6620 -2.3394 -6.8701 27 6 4.0823 -1.7670 -5.7535 28 6 3.2466 -0.6696 -5.8950 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.7095 1.1617 3.4844 33 1 2.2491 -1.6317 -1.1526 34 1 1.3474 1.4296 -4.1001 35 1 2.8096 2.0091 -4.9429 36 1 0.1138 2.6168 -7.4418 37 1 -0.0484 2.8464 -5.6841 38 1 1.4339 3.3724 -6.5174 39 1 3.3849 -0.3217 -9.2565 40 1 4.8634 -2.2693 -8.9962 41 1 5.3126 -3.1946 -6.7616 42 1 4.2798 -2.1737 -4.7727 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276096728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:30 Heat of formation + Delta-G solvation = -57.583127 kcal Electronic energy + Delta-G solvation = -26905.364922 eV Core-core repulsion = 23044.689205 eV Total energy + Delta-G solvation = -3860.675717 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.61039 -39.80420 -38.34300 -37.61093 -35.93940 -34.84971 -32.75327 -32.51415 -30.62258 -29.40279 -29.06347 -26.85116 -25.41944 -24.91634 -23.21253 -22.85590 -21.11204 -20.26832 -19.68537 -18.47347 -17.83502 -17.45192 -16.42078 -16.24766 -15.93554 -15.76598 -15.26265 -15.19193 -14.61902 -14.22602 -14.02580 -13.99980 -13.81575 -13.42015 -13.19135 -12.95550 -12.63632 -12.56879 -12.30463 -11.96529 -11.86645 -11.78554 -11.33270 -11.20593 -11.07084 -11.05489 -10.83618 -10.67667 -10.41691 -10.32866 -10.20316 -9.23072 -8.95211 -8.68124 -8.55206 -8.25684 -7.90888 -6.23832 -4.33661 1.00411 1.30457 1.83372 2.30063 3.02819 3.20251 3.27134 3.29639 3.42420 3.68866 3.76369 4.25883 4.31382 4.61684 4.72303 4.77724 4.88120 4.98733 5.09589 5.15034 5.23658 5.32480 5.39119 5.44878 5.50845 5.73608 5.85114 5.88879 5.99269 6.16537 6.34272 6.45967 6.62597 6.72028 6.76380 6.92126 6.94461 7.10024 7.21755 7.29301 7.53856 7.65583 7.77275 7.96875 8.31673 8.49575 8.75711 9.33739 10.82214 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.003290 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.735281 B = 8509.516212 C = 9660.693264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.261 3.739 3 H 0.056 0.944 4 C -0.539 4.539 5 H 0.065 0.935 6 C 0.069 3.931 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.663 5.663 13 C 0.497 3.503 14 O -0.530 6.530 15 C 0.509 3.491 16 O -0.500 6.500 17 N -0.534 5.534 18 C 0.053 3.947 19 C 0.072 3.928 20 H 0.076 0.924 21 C -0.142 4.142 22 O -0.312 6.312 23 C 0.100 3.900 24 C -0.131 4.131 25 C -0.108 4.108 26 C -0.131 4.131 27 C -0.112 4.112 28 C 0.078 3.922 29 H 0.030 0.970 30 H 0.095 0.905 31 H 0.016 0.984 32 H 0.266 0.734 33 H 0.403 0.597 34 H 0.151 0.849 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.989 -0.929 -19.261 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.577 4.577 5 H 0.083 0.917 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.311 5.311 13 C 0.276 3.724 14 O -0.410 6.410 15 C 0.295 3.705 16 O -0.375 6.375 17 N -0.259 5.259 18 C -0.068 4.068 19 C 0.015 3.985 20 H 0.094 0.906 21 C -0.199 4.199 22 O -0.227 6.227 23 C 0.052 3.948 24 C -0.150 4.150 25 C -0.127 4.127 26 C -0.150 4.150 27 C -0.132 4.132 28 C -0.016 4.016 29 H 0.049 0.951 30 H 0.114 0.886 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.238 0.762 34 H 0.168 0.832 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.837 -0.432 -19.094 19.187 hybrid contribution 0.418 -0.912 0.985 1.406 sum 2.255 -1.343 -18.109 18.298 Atomic orbital electron populations 1.22102 0.97690 0.99626 1.01255 1.19022 0.91495 0.94188 0.79232 0.92657 1.21183 1.32928 1.13585 0.89984 0.91699 1.24872 0.94605 0.94925 0.99115 1.69882 1.35601 1.22348 1.24171 0.86384 0.78633 0.79945 0.81820 1.20436 1.20974 1.19685 1.46549 1.60684 1.14566 1.09272 1.19586 0.80999 0.87276 0.84535 1.90565 1.51351 1.15377 1.83710 1.20925 0.79190 0.86074 0.84349 1.90598 1.45106 1.16712 1.85087 1.45511 1.53550 1.19421 1.07371 1.23574 1.00223 0.82537 1.00462 1.22945 0.90402 0.99510 0.85671 0.90574 1.21742 1.01298 0.93430 1.03428 1.86012 1.49093 1.43195 1.44399 1.18575 0.94722 0.89915 0.91540 1.20377 1.00816 0.97168 0.96682 1.20936 0.98311 0.95763 0.97719 1.21049 1.01087 1.00860 0.91984 1.21743 0.94795 0.94815 1.01854 1.18091 0.99581 0.98505 0.85417 0.95056 0.88607 0.96488 0.92385 0.76218 0.83181 0.89312 0.91024 0.89548 0.91068 0.84943 0.85432 0.85469 0.82063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.26 37.16 0.34 -3.12 16 2 C 0.26 6.33 2.56 -69.09 -0.18 6.16 16 3 H 0.06 1.51 7.58 -51.92 -0.39 1.11 16 4 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 5 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -23.87 11.32 55.43 0.63 -23.24 16 8 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 12 N -0.66 -13.75 5.06 -55.40 -0.28 -14.03 16 13 C 0.50 9.69 7.69 -11.64 -0.09 9.60 16 14 O -0.53 -10.89 12.95 5.48 0.07 -10.82 16 15 C 0.51 8.98 7.64 -11.64 -0.09 8.89 16 16 O -0.50 -9.15 13.39 5.46 0.07 -9.08 16 17 N -0.53 -8.45 3.01 -112.89 -0.34 -8.79 16 18 C 0.05 0.73 5.19 -3.33 -0.02 0.72 16 19 C 0.07 0.83 3.58 -26.45 -0.09 0.74 16 20 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 21 C -0.14 -1.23 9.59 37.16 0.36 -0.87 16 22 O -0.31 -4.08 9.97 -19.38 -0.19 -4.27 16 23 C 0.10 1.36 6.52 -39.02 -0.25 1.11 16 24 C -0.13 -1.50 9.97 -39.42 -0.39 -1.89 16 25 C -0.11 -1.11 10.03 -39.57 -0.40 -1.51 16 26 C -0.13 -1.52 10.04 -39.56 -0.40 -1.91 16 27 C -0.11 -1.63 8.92 -39.43 -0.35 -1.98 16 28 C 0.08 1.18 6.32 -83.44 -0.53 0.66 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 31 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.40 7.83 8.02 -40.82 -0.33 7.50 16 34 H 0.15 2.23 5.00 -52.09 -0.26 1.96 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 41 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.16 2.55 5.21 -52.51 -0.27 2.27 16 LS Contribution 347.01 15.07 5.23 5.23 Total: -1.00 -28.65 347.01 -7.66 -36.30 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -5.34 Total: 9.42 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -2.48 Total: 4.10 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.01 Total: -46.06 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.05 Total: -24.18 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.65 -7.66 -36.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276096728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.282 kcal (2) G-P(sol) polarization free energy of solvation -28.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds