Wall clock time and date at job start Tue Mar 31 2020 12:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47207 * 2 1 4 4 C 1.50696 * 109.47346 * 120.00134 * 2 1 3 5 5 H 1.07999 * 120.00084 * 119.99729 * 4 2 1 6 6 C 1.37880 * 119.99688 * 300.00175 * 4 2 1 7 7 N 1.31515 * 120.00219 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99822 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47064 * 90.00084 * 8 6 4 10 10 H 1.48499 * 109.47551 * 210.00089 * 8 6 4 11 11 H 1.48502 * 109.47177 * 330.00446 * 8 6 4 12 12 N 1.46497 * 109.47170 * 240.00569 * 2 1 3 13 13 C 1.34769 * 120.00527 * 85.00142 * 12 2 1 14 14 O 1.21368 * 120.00262 * 359.97438 * 13 12 2 15 15 C 1.49335 * 120.00261 * 180.02562 * 13 12 2 16 16 O 1.21391 * 119.99792 * 353.72581 * 15 13 12 17 17 N 1.34775 * 120.00001 * 173.72442 * 15 13 12 18 18 C 1.47293 * 121.14704 * 352.74260 * 17 15 13 19 19 C 1.53532 * 107.59532 * 222.24389 * 18 17 15 20 20 H 1.09002 * 109.58772 * 61.62674 * 19 18 17 21 21 C 1.53001 * 109.69852 * 181.97282 * 19 18 17 22 22 O 1.42958 * 108.79233 * 301.82994 * 19 18 17 23 23 C 1.35886 * 117.74615 * 49.44627 * 22 19 18 24 24 C 1.38705 * 119.67134 * 159.92250 * 23 22 19 25 25 C 1.38199 * 120.05351 * 179.65787 * 24 23 22 26 26 C 1.38299 * 120.31318 * 0.02562 * 25 24 23 27 27 C 1.38225 * 120.07217 * 0.03679 * 26 25 24 28 28 C 1.38655 * 119.87116 * 0.03491 * 27 26 25 29 29 H 1.09000 * 109.47339 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47470 * 299.99851 * 1 2 3 31 31 H 1.09009 * 109.47179 * 59.99856 * 1 2 3 32 32 H 0.96997 * 119.99643 * 180.02562 * 7 6 4 33 33 H 0.97006 * 119.99470 * 264.99383 * 12 2 1 34 34 H 1.08999 * 109.83475 * 341.76353 * 18 17 15 35 35 H 1.08998 * 109.83867 * 102.72664 * 18 17 15 36 36 H 1.09007 * 109.47181 * 179.37566 * 21 19 18 37 37 H 1.09000 * 109.46969 * 299.37348 * 21 19 18 38 38 H 1.08998 * 109.47452 * 59.37559 * 21 19 18 39 39 H 1.08000 * 119.96927 * 359.64183 * 24 23 22 40 40 H 1.08001 * 119.84300 * 179.97438 * 25 24 23 41 41 H 1.08000 * 119.96669 * 180.02562 * 26 25 24 42 42 H 1.07994 * 120.06583 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.6297 -0.5458 4.4123 10 1 1.3431 -0.9494 5.1120 11 1 2.4860 -2.5662 3.7118 12 7 2.0183 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8580 1.1594 -2.4118 15 6 2.6443 -0.7222 -3.5766 16 8 3.0400 -1.8671 -3.4975 17 7 2.6538 -0.0865 -4.7649 18 6 2.0362 1.2413 -4.9236 19 6 1.2698 1.2406 -6.2540 20 1 0.4843 0.4854 -6.2228 21 6 0.6476 2.6181 -6.4914 22 8 2.1831 0.9387 -7.3115 23 6 2.9932 -0.1415 -7.1586 24 6 3.5787 -0.7238 -8.2731 25 6 4.4097 -1.8183 -8.1261 26 6 4.6620 -2.3394 -6.8701 27 6 4.0823 -1.7670 -5.7535 28 6 3.2466 -0.6696 -5.8950 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.7095 1.1617 3.4844 33 1 2.2491 -1.6317 -1.1526 34 1 1.3474 1.4296 -4.1001 35 1 2.8096 2.0091 -4.9429 36 1 0.1138 2.6168 -7.4418 37 1 -0.0484 2.8464 -5.6841 38 1 1.4339 3.3724 -6.5174 39 1 3.3849 -0.3217 -9.2565 40 1 4.8634 -2.2693 -8.9962 41 1 5.3126 -3.1946 -6.7616 42 1 4.2798 -2.1737 -4.7727 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276096728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:29 Heat of formation + Delta-G solvation = -75.166458 kcal Electronic energy + Delta-G solvation = -26906.127393 eV Core-core repulsion = 23044.689205 eV Total energy + Delta-G solvation = -3861.438188 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.80234 -41.13341 -39.74571 -38.62997 -37.38464 -36.43276 -34.39520 -33.65512 -31.65209 -31.10224 -30.18923 -27.91887 -27.39402 -26.25605 -24.39820 -23.82680 -22.63495 -21.55168 -21.18377 -19.64321 -19.18857 -18.63338 -17.99279 -17.59734 -17.24852 -17.18113 -16.87133 -16.23571 -16.10406 -15.60354 -15.27512 -15.15954 -14.91110 -14.80731 -14.48950 -14.30689 -14.01201 -13.79532 -13.46299 -13.17195 -13.06493 -12.93113 -12.88204 -12.77646 -12.69780 -12.32554 -12.31014 -12.18927 -12.04948 -11.79900 -11.31704 -11.19236 -10.67255 -10.35136 -10.04757 -9.55367 -8.97560 -8.22774 -6.39912 -0.19163 0.34090 0.58036 0.99360 1.44260 1.45295 1.55695 1.95565 2.05048 2.28483 2.42861 2.77084 3.08287 3.23271 3.33145 3.65035 3.78794 3.86563 4.09243 4.24846 4.27948 4.35075 4.46189 4.54249 4.66723 4.68962 4.83501 4.87757 4.94100 4.98290 4.99771 5.18044 5.23762 5.28241 5.33824 5.41922 5.52531 5.57453 5.69700 5.77557 5.82306 6.00987 6.20348 6.35156 6.59253 6.66504 6.97454 7.32044 8.83258 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.003290 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.735281 B = 8509.516212 C = 9660.693264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.269 3.731 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.069 0.931 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.970 3.030 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.264 1.264 12 N -0.666 5.666 13 C 0.498 3.502 14 O -0.543 6.543 15 C 0.511 3.489 16 O -0.512 6.512 17 N -0.530 5.530 18 C 0.051 3.949 19 C 0.075 3.925 20 H 0.075 0.925 21 C -0.136 4.136 22 O -0.314 6.314 23 C 0.087 3.913 24 C -0.130 4.130 25 C -0.092 4.092 26 C -0.130 4.130 27 C -0.132 4.132 28 C 0.045 3.955 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.024 0.976 32 H 0.268 0.732 33 H 0.410 0.590 34 H 0.138 0.862 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.159 0.841 40 H 0.168 0.832 41 H 0.152 0.848 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.643 -1.859 -21.441 21.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.036 0.964 4 C -0.593 4.593 5 H 0.087 0.913 6 C -0.179 4.179 7 N -0.548 5.548 8 Si 0.795 3.205 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.189 1.189 12 N -0.315 5.315 13 C 0.278 3.722 14 O -0.423 6.423 15 C 0.296 3.704 16 O -0.389 6.389 17 N -0.254 5.254 18 C -0.070 4.070 19 C 0.018 3.982 20 H 0.093 0.907 21 C -0.193 4.193 22 O -0.229 6.229 23 C 0.040 3.960 24 C -0.148 4.148 25 C -0.111 4.111 26 C -0.149 4.149 27 C -0.152 4.152 28 C -0.048 4.048 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.245 0.755 34 H 0.156 0.844 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.176 0.824 40 H 0.186 0.814 41 H 0.169 0.831 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.497 -1.358 -21.325 21.513 hybrid contribution 0.267 -0.601 1.507 1.644 sum 2.764 -1.959 -19.818 20.106 Atomic orbital electron populations 1.21923 0.97143 0.99837 1.00530 1.18659 0.91854 0.92426 0.80351 0.96406 1.21486 1.33171 1.13855 0.90801 0.91291 1.25690 0.94681 0.95547 1.01966 1.70003 1.36442 1.23513 1.24888 0.85370 0.77940 0.79072 0.78144 1.20275 1.20571 1.18858 1.46300 1.61427 1.14791 1.08935 1.19920 0.80250 0.87113 0.84879 1.90565 1.51536 1.16032 1.84168 1.20375 0.79721 0.85923 0.84377 1.90600 1.45982 1.16967 1.85304 1.45505 1.53056 1.19783 1.07073 1.23611 1.00096 0.81760 1.01491 1.23043 0.89770 1.01206 0.84149 0.90689 1.21773 1.01474 0.91499 1.04598 1.86013 1.49204 1.43139 1.44555 1.18902 0.95266 0.90239 0.91617 1.20814 0.99971 0.97041 0.97014 1.21407 0.96667 0.94599 0.98396 1.21374 1.00653 1.01195 0.91652 1.21730 0.95943 0.95359 1.02189 1.18353 1.01130 0.99747 0.85547 0.94242 0.90685 0.95743 0.92249 0.75457 0.84445 0.89295 0.89455 0.88660 0.90753 0.82367 0.81408 0.83063 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.49 9.26 71.98 0.67 -5.82 16 2 C 0.27 13.46 2.56 44.24 0.11 13.57 16 3 H 0.02 1.03 7.58 -2.38 -0.02 1.01 16 4 C -0.56 -29.04 8.73 25.60 0.22 -28.82 16 5 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 6 C 0.02 1.16 5.30 84.66 0.45 1.61 16 7 N -0.91 -50.12 11.32 21.45 0.24 -49.88 16 8 Si 0.97 41.43 29.54 68.60 2.03 43.46 16 9 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 12 N -0.67 -28.48 5.06 -447.56 -2.26 -30.74 16 13 C 0.50 20.13 7.69 87.23 0.67 20.80 16 14 O -0.54 -23.17 12.95 -3.30 -0.04 -23.21 16 15 C 0.51 18.62 7.64 87.23 0.67 19.29 16 16 O -0.51 -19.32 13.39 -3.38 -0.05 -19.37 16 17 N -0.53 -17.13 3.01 -629.43 -1.89 -19.02 16 18 C 0.05 1.43 5.19 86.41 0.45 1.88 16 19 C 0.07 1.70 3.58 30.77 0.11 1.81 16 20 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 21 C -0.14 -2.17 9.59 71.98 0.69 -1.48 16 22 O -0.31 -7.76 9.97 -92.27 -0.92 -8.68 16 23 C 0.09 2.25 6.52 22.63 0.15 2.40 16 24 C -0.13 -2.54 9.97 22.37 0.22 -2.31 16 25 C -0.09 -1.54 10.03 22.27 0.22 -1.32 16 26 C -0.13 -2.70 10.04 22.28 0.22 -2.48 16 27 C -0.13 -3.79 8.92 22.37 0.20 -3.59 16 28 C 0.05 1.36 6.32 38.14 0.24 1.61 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 31 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 33 H 0.41 16.34 8.02 -92.70 -0.74 15.59 16 34 H 0.14 4.22 5.00 -4.89 -0.02 4.19 16 35 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 39 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 42 H 0.14 4.59 5.21 -3.23 -0.02 4.58 16 Total: -1.00 -62.78 347.01 2.70 -60.08 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.30 Total: 30.22 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 5.30 Total: 17.15 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -3.91 Total: -99.65 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -1.01 Total: -51.26 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -62.78 2.70 -60.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276096728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.088 kcal (2) G-P(sol) polarization free energy of solvation -62.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds