Wall clock time and date at job start Tue Mar 31 2020 13:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47572 * 328.22437 * 3 2 1 5 5 C 1.36872 * 119.99863 * 263.65337 * 4 3 2 6 6 H 1.07996 * 119.99748 * 196.86216 * 5 4 3 7 7 C 1.39019 * 119.99953 * 16.86706 * 5 4 3 8 8 N 1.31386 * 120.00318 * 14.40989 * 7 5 4 9 9 Si 1.86805 * 119.99690 * 194.40948 * 7 5 4 10 10 H 1.48504 * 109.47176 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46689 * 119.99859 * 9 7 5 12 12 H 1.48493 * 109.47161 * 239.99944 * 9 7 5 13 13 C 1.34770 * 119.99708 * 83.65119 * 4 3 2 14 14 O 1.21724 * 119.99900 * 184.50325 * 13 4 3 15 15 C 1.46685 * 120.00649 * 4.50274 * 13 4 3 16 16 N 1.37806 * 125.84828 * 257.72741 * 15 13 4 17 17 H 0.97004 * 125.39182 * 359.97438 * 16 15 13 18 18 C 1.34270 * 109.22889 * 180.14281 * 16 15 13 19 19 C 1.50703 * 125.79591 * 179.89289 * 18 16 15 20 20 C 1.38300 * 108.40011 * 359.62668 * 18 16 15 21 21 C 1.47246 * 126.47066 * 180.19118 * 20 18 16 22 22 O 1.21530 * 120.00172 * 90.02036 * 21 20 18 23 23 O 1.34763 * 120.00138 * 270.03292 * 21 20 18 24 24 C 1.45199 * 117.00196 * 179.97438 * 23 21 20 25 25 C 1.53007 * 109.47343 * 179.97438 * 24 23 21 26 26 C 1.36442 * 125.84959 * 77.45725 * 15 13 4 27 27 C 1.50702 * 126.49832 * 0.04049 * 26 15 13 28 28 H 4.40647 * 5.51445 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.46926 * 208.22383 * 3 2 1 30 30 H 1.08999 * 109.46852 * 88.22730 * 3 2 1 31 31 H 0.96998 * 120.00016 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47298 * 269.68835 * 19 18 16 33 33 H 1.09007 * 109.46723 * 149.69199 * 19 18 16 34 34 H 1.08998 * 109.47543 * 29.69079 * 19 18 16 35 35 H 1.09001 * 109.47230 * 299.99597 * 24 23 21 36 36 H 1.09000 * 109.47574 * 59.99742 * 24 23 21 37 37 H 1.08990 * 109.46979 * 59.99438 * 25 24 23 38 38 H 1.08997 * 109.46954 * 179.97438 * 25 24 23 39 39 H 1.09007 * 109.46720 * 299.99641 * 25 24 23 40 40 H 1.09001 * 109.47321 * 269.96194 * 27 26 15 41 41 H 1.09001 * 109.47117 * 29.96053 * 27 26 15 42 42 H 1.08994 * 109.47194 * 149.95513 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1733 0.7273 5 6 3.4866 -1.0641 2.0456 6 1 4.0917 -1.8297 2.5082 7 6 3.0647 0.0323 2.7890 8 7 2.1110 0.8102 2.3291 9 14 3.8540 0.3995 4.4418 10 1 4.8956 -0.6190 4.7302 11 1 4.4769 1.7470 4.4044 12 1 2.8174 0.3626 5.5044 13 6 3.2384 -2.3607 0.0984 14 8 3.5660 -3.3533 0.7221 15 6 2.9563 -2.4571 -1.3379 16 7 1.7998 -2.9506 -1.9018 17 1 1.0366 -3.2927 -1.4104 18 6 1.8979 -2.8867 -3.2394 19 6 0.8456 -3.3307 -4.2226 20 6 3.1261 -2.3385 -3.5614 21 6 3.6431 -2.0846 -4.9166 22 8 3.4319 -1.0170 -5.4574 23 8 4.3503 -3.0362 -5.5572 24 6 4.8282 -2.7169 -6.8906 25 6 5.6043 -3.9094 -7.4534 26 6 3.7918 -2.0687 -2.3442 27 6 5.1646 -1.4670 -2.1875 28 1 -1.0499 -0.0002 0.0004 29 1 3.0089 0.9063 0.4860 30 1 3.0093 -0.0310 -1.0272 31 1 1.8169 1.5754 2.8477 32 1 1.0064 -4.3779 -4.4788 33 1 0.9110 -2.7218 -5.1244 34 1 -0.1417 -3.2135 -3.7759 35 1 3.9793 -2.4973 -7.5380 36 1 5.4835 -1.8472 -6.8431 37 1 4.9495 -4.7794 -7.5008 38 1 5.9627 -3.6698 -8.4545 39 1 6.4534 -4.1286 -6.8059 40 1 5.0814 -0.3816 -2.1316 41 1 5.6243 -1.8437 -1.2738 42 1 5.7811 -1.7405 -3.0438 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281520696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:31 Heat of formation + Delta-G solvation = -14.394501 kcal Electronic energy + Delta-G solvation = -27022.951793 eV Core-core repulsion = 23164.148875 eV Total energy + Delta-G solvation = -3858.802918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.34581 -39.85733 -38.23947 -36.35611 -35.21241 -32.90544 -32.21720 -31.88642 -31.29812 -31.12787 -27.99308 -26.79008 -26.18874 -24.65536 -23.85411 -22.36063 -20.70609 -19.71014 -18.81119 -18.00270 -17.34840 -17.17809 -16.49872 -16.36570 -15.73699 -15.59357 -14.66731 -14.58677 -14.13040 -13.97582 -13.87341 -13.39028 -13.19090 -12.98377 -12.90002 -12.84636 -12.61443 -12.27285 -12.17276 -12.05334 -11.97215 -11.87809 -11.66775 -11.57339 -11.20042 -11.08959 -10.56427 -10.52916 -10.45684 -10.40154 -9.46523 -9.44678 -8.94079 -8.73159 -8.54234 -8.00441 -7.62026 -6.43976 -3.99765 2.13932 2.30693 2.58171 2.87664 3.10412 3.19254 3.24070 3.29567 3.74858 3.88558 4.05409 4.11006 4.79937 4.80413 4.84938 4.88031 4.98088 5.05634 5.13983 5.14553 5.44338 5.45393 5.48425 5.59839 5.60682 5.63516 5.76669 5.81414 5.84772 6.07753 6.13779 6.31573 6.37220 6.41101 6.58268 6.81887 6.99322 7.02383 7.18311 7.43624 7.63996 7.90872 7.92983 8.29770 8.74872 8.97703 9.20093 9.74594 10.54961 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019796 B = 0.003721 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.104360 B = 7523.921952 C = 7947.032724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.102 4.102 3 C 0.223 3.777 4 N -0.415 5.415 5 C -0.311 4.311 6 H 0.108 0.892 7 C 0.032 3.968 8 N -0.863 5.863 9 Si 0.930 3.070 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.502 3.498 14 O -0.575 6.575 15 C 0.018 3.982 16 N -0.509 5.509 17 H 0.421 0.579 18 C 0.075 3.925 19 C -0.089 4.089 20 C -0.206 4.206 21 C 0.555 3.445 22 O -0.505 6.505 23 O -0.351 6.351 24 C 0.058 3.942 25 C -0.152 4.152 26 C -0.095 4.095 27 C -0.086 4.086 28 H 0.199 0.801 29 H 0.123 0.877 30 H 0.067 0.933 31 H 0.271 0.729 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.534 -4.082 -15.192 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.103 4.103 3 C 0.101 3.899 4 N -0.132 5.132 5 C -0.439 4.439 6 H 0.126 0.874 7 C -0.173 4.173 8 N -0.501 5.501 9 Si 0.756 3.244 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.207 1.207 13 C 0.289 3.711 14 O -0.459 6.459 15 C -0.097 4.097 16 N -0.102 5.102 17 H 0.259 0.741 18 C -0.045 4.045 19 C -0.147 4.147 20 C -0.214 4.214 21 C 0.398 3.602 22 O -0.392 6.392 23 O -0.268 6.268 24 C -0.016 4.016 25 C -0.209 4.209 26 C -0.101 4.101 27 C -0.143 4.143 28 H 0.216 0.784 29 H 0.140 0.860 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.484 -4.109 -14.861 15.426 hybrid contribution -0.517 0.356 0.937 1.128 sum -0.033 -3.753 -13.924 14.421 Atomic orbital electron populations 1.24245 0.95350 1.03277 1.06214 1.23189 0.94311 0.97598 0.95245 1.18505 0.84260 0.92282 0.94888 1.43586 1.53575 1.05774 1.10216 1.19814 1.30542 1.08405 0.85092 0.87401 1.25387 0.95288 0.96654 0.99954 1.70036 1.24492 1.16745 1.38835 0.85806 0.79147 0.78533 0.80934 1.19031 1.20417 1.20744 1.16750 0.86414 0.83956 0.83996 1.90689 1.53282 1.35579 1.66345 1.20077 0.88101 1.07086 0.94415 1.41440 1.15695 1.47732 1.05343 0.74072 1.20233 0.96648 1.03804 0.83845 1.20418 0.95527 1.01995 0.96730 1.18036 0.96853 1.16934 0.89574 1.20395 0.73878 0.81062 0.84831 1.90824 1.55377 1.25606 1.67433 1.86721 1.65031 1.44501 1.30574 1.23005 0.98569 0.99052 0.80937 1.21796 1.00644 0.97663 1.00787 1.19290 0.97178 1.04466 0.89132 1.20237 0.91399 1.00298 1.02365 0.78418 0.85962 0.91550 0.91859 0.90297 0.90234 0.90865 0.91411 0.91293 0.91541 0.90453 0.91387 0.91224 0.90901 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.60 19.25 29.55 0.57 -5.03 16 2 C -0.10 -2.30 11.63 -37.12 -0.43 -2.73 16 3 C 0.22 5.07 4.92 -6.83 -0.03 5.03 16 4 N -0.42 -10.30 2.60 -119.42 -0.31 -10.61 16 5 C -0.31 -8.26 9.36 -15.01 -0.14 -8.40 16 6 H 0.11 2.99 7.36 -52.49 -0.39 2.61 16 7 C 0.03 0.80 5.06 -17.45 -0.09 0.71 16 8 N -0.86 -21.85 9.09 55.50 0.50 -21.34 16 9 Si 0.93 19.84 29.58 -169.99 -5.03 14.81 16 10 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 C 0.50 12.23 6.96 -12.85 -0.09 12.14 16 14 O -0.58 -15.93 16.78 5.17 0.09 -15.84 16 15 C 0.02 0.36 5.33 -82.42 -0.44 -0.08 16 16 N -0.51 -8.66 6.01 -5.60 -0.03 -8.69 16 17 H 0.42 6.37 8.96 -40.82 -0.37 6.00 16 18 C 0.07 1.16 7.21 -81.50 -0.59 0.57 16 19 C -0.09 -0.98 10.24 36.01 0.37 -0.61 16 20 C -0.21 -3.56 6.01 -105.04 -0.63 -4.19 16 21 C 0.56 9.10 7.14 34.39 0.25 9.35 16 22 O -0.51 -9.15 16.90 -19.29 -0.33 -9.48 16 23 O -0.35 -5.01 10.23 -40.66 -0.42 -5.43 16 24 C 0.06 0.62 6.20 37.16 0.23 0.85 16 25 C -0.15 -1.17 10.29 37.16 0.38 -0.78 16 26 C -0.09 -1.79 5.32 -104.09 -0.55 -2.34 16 27 C -0.09 -1.46 9.88 36.01 0.36 -1.11 16 28 H 0.20 3.29 7.80 -54.10 -0.42 2.87 16 29 H 0.12 2.91 6.11 -51.93 -0.32 2.59 16 30 H 0.07 1.39 6.13 -51.93 -0.32 1.07 16 31 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.86 7.93 -51.92 -0.41 0.45 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 41 H 0.07 1.30 7.91 -51.93 -0.41 0.89 16 42 H 0.06 0.90 8.05 -51.93 -0.42 0.48 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -32.46 370.89 -6.34 -38.80 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.56 Total: 8.83 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -0.84 Total: 3.36 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.16 Total: -40.64 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.66 Total: -30.74 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.81 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.46 -6.34 -38.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281520696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.403 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds