Wall clock time and date at job start Tue Mar 31 2020 13:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47572 * 328.22437 * 3 2 1 5 5 C 1.36872 * 119.99863 * 263.65337 * 4 3 2 6 6 H 1.07996 * 119.99748 * 196.86216 * 5 4 3 7 7 C 1.39019 * 119.99953 * 16.86706 * 5 4 3 8 8 N 1.31386 * 120.00318 * 14.40989 * 7 5 4 9 9 Si 1.86805 * 119.99690 * 194.40948 * 7 5 4 10 10 H 1.48504 * 109.47176 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46689 * 119.99859 * 9 7 5 12 12 H 1.48493 * 109.47161 * 239.99944 * 9 7 5 13 13 C 1.34770 * 119.99708 * 83.65119 * 4 3 2 14 14 O 1.21724 * 119.99900 * 184.50325 * 13 4 3 15 15 C 1.46685 * 120.00649 * 4.50274 * 13 4 3 16 16 N 1.37806 * 125.84828 * 257.72741 * 15 13 4 17 17 H 0.97004 * 125.39182 * 359.97438 * 16 15 13 18 18 C 1.34270 * 109.22889 * 180.14281 * 16 15 13 19 19 C 1.50703 * 125.79591 * 179.89289 * 18 16 15 20 20 C 1.38300 * 108.40011 * 359.62668 * 18 16 15 21 21 C 1.47246 * 126.47066 * 180.19118 * 20 18 16 22 22 O 1.21530 * 120.00172 * 90.02036 * 21 20 18 23 23 O 1.34763 * 120.00138 * 270.03292 * 21 20 18 24 24 C 1.45199 * 117.00196 * 179.97438 * 23 21 20 25 25 C 1.53007 * 109.47343 * 179.97438 * 24 23 21 26 26 C 1.36442 * 125.84959 * 77.45725 * 15 13 4 27 27 C 1.50702 * 126.49832 * 0.04049 * 26 15 13 28 28 H 4.40647 * 5.51445 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.46926 * 208.22383 * 3 2 1 30 30 H 1.08999 * 109.46852 * 88.22730 * 3 2 1 31 31 H 0.96998 * 120.00016 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47298 * 269.68835 * 19 18 16 33 33 H 1.09007 * 109.46723 * 149.69199 * 19 18 16 34 34 H 1.08998 * 109.47543 * 29.69079 * 19 18 16 35 35 H 1.09001 * 109.47230 * 299.99597 * 24 23 21 36 36 H 1.09000 * 109.47574 * 59.99742 * 24 23 21 37 37 H 1.08990 * 109.46979 * 59.99438 * 25 24 23 38 38 H 1.08997 * 109.46954 * 179.97438 * 25 24 23 39 39 H 1.09007 * 109.46720 * 299.99641 * 25 24 23 40 40 H 1.09001 * 109.47321 * 269.96194 * 27 26 15 41 41 H 1.09001 * 109.47117 * 29.96053 * 27 26 15 42 42 H 1.08994 * 109.47194 * 149.95513 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1733 0.7273 5 6 3.4866 -1.0641 2.0456 6 1 4.0917 -1.8297 2.5082 7 6 3.0647 0.0323 2.7890 8 7 2.1110 0.8102 2.3291 9 14 3.8540 0.3995 4.4418 10 1 4.8956 -0.6190 4.7302 11 1 4.4769 1.7470 4.4044 12 1 2.8174 0.3626 5.5044 13 6 3.2384 -2.3607 0.0984 14 8 3.5660 -3.3533 0.7221 15 6 2.9563 -2.4571 -1.3379 16 7 1.7998 -2.9506 -1.9018 17 1 1.0366 -3.2927 -1.4104 18 6 1.8979 -2.8867 -3.2394 19 6 0.8456 -3.3307 -4.2226 20 6 3.1261 -2.3385 -3.5614 21 6 3.6431 -2.0846 -4.9166 22 8 3.4319 -1.0170 -5.4574 23 8 4.3503 -3.0362 -5.5572 24 6 4.8282 -2.7169 -6.8906 25 6 5.6043 -3.9094 -7.4534 26 6 3.7918 -2.0687 -2.3442 27 6 5.1646 -1.4670 -2.1875 28 1 -1.0499 -0.0002 0.0004 29 1 3.0089 0.9063 0.4860 30 1 3.0093 -0.0310 -1.0272 31 1 1.8169 1.5754 2.8477 32 1 1.0064 -4.3779 -4.4788 33 1 0.9110 -2.7218 -5.1244 34 1 -0.1417 -3.2135 -3.7759 35 1 3.9793 -2.4973 -7.5380 36 1 5.4835 -1.8472 -6.8431 37 1 4.9495 -4.7794 -7.5008 38 1 5.9627 -3.6698 -8.4545 39 1 6.4534 -4.1286 -6.8059 40 1 5.0814 -0.3816 -2.1316 41 1 5.6243 -1.8437 -1.2738 42 1 5.7811 -1.7405 -3.0438 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281520696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:31 Heat of formation + Delta-G solvation = -33.197637 kcal Electronic energy + Delta-G solvation = -27023.767158 eV Core-core repulsion = 23164.148875 eV Total energy + Delta-G solvation = -3859.618283 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.72622 -41.09930 -40.03892 -37.52715 -37.13962 -34.35772 -33.92711 -33.13337 -32.88132 -32.17520 -29.21950 -28.54790 -27.82577 -26.20644 -25.13473 -23.34556 -22.25307 -20.94801 -20.30986 -19.78895 -18.95831 -18.44118 -18.16407 -17.70670 -17.22966 -16.84914 -16.32666 -16.15255 -15.64494 -15.62160 -15.00378 -14.62870 -14.55994 -14.31228 -14.24272 -14.03351 -13.84573 -13.74696 -13.58993 -13.42298 -13.22576 -13.16871 -12.87859 -12.81412 -12.54405 -12.49692 -12.45783 -12.13813 -11.72823 -11.47063 -11.32995 -11.19571 -10.75237 -10.59509 -9.94839 -9.89649 -9.02770 -8.37301 -6.02051 0.84401 1.04795 1.20464 1.24767 1.43497 1.53480 1.57486 1.90438 2.09409 2.23919 2.34049 2.38081 3.01936 3.20060 3.72944 3.80206 3.87851 3.96301 4.04853 4.08106 4.13845 4.25740 4.41000 4.43701 4.61870 4.67787 4.71911 4.79264 4.86802 4.92392 4.97377 4.98688 5.02844 5.08633 5.20142 5.37250 5.40315 5.44872 5.62143 5.77724 5.94971 6.33519 6.39152 6.73450 7.02055 7.06808 7.27753 7.83748 8.59852 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019796 B = 0.003721 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.104360 B = 7523.921952 C = 7947.032724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.150 4.150 3 C 0.234 3.766 4 N -0.420 5.420 5 C -0.349 4.349 6 H 0.083 0.917 7 C 0.005 3.995 8 N -0.871 5.871 9 Si 0.993 3.007 10 H -0.272 1.272 11 H -0.264 1.264 12 H -0.278 1.278 13 C 0.501 3.499 14 O -0.623 6.623 15 C -0.019 4.019 16 N -0.505 5.505 17 H 0.429 0.571 18 C 0.103 3.897 19 C -0.089 4.089 20 C -0.234 4.234 21 C 0.565 3.435 22 O -0.527 6.527 23 O -0.355 6.355 24 C 0.049 3.951 25 C -0.146 4.146 26 C -0.094 4.094 27 C -0.085 4.085 28 H 0.237 0.763 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.275 0.725 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.706 -3.976 -16.920 17.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.151 4.151 3 C 0.112 3.888 4 N -0.136 5.136 5 C -0.477 4.477 6 H 0.101 0.899 7 C -0.199 4.199 8 N -0.508 5.508 9 Si 0.816 3.184 10 H -0.197 1.197 11 H -0.189 1.189 12 H -0.203 1.203 13 C 0.290 3.710 14 O -0.511 6.511 15 C -0.132 4.132 16 N -0.099 5.099 17 H 0.268 0.732 18 C -0.018 4.018 19 C -0.146 4.146 20 C -0.241 4.241 21 C 0.408 3.592 22 O -0.416 6.416 23 O -0.271 6.271 24 C -0.025 4.025 25 C -0.203 4.203 26 C -0.100 4.100 27 C -0.142 4.142 28 H 0.253 0.747 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.765 -3.984 -16.610 17.098 hybrid contribution -0.183 0.303 1.368 1.413 sum -0.948 -3.681 -15.242 15.709 Atomic orbital electron populations 1.25138 0.96249 1.01041 1.04034 1.23354 0.94827 0.99649 0.97257 1.18337 0.85023 0.90653 0.94819 1.43714 1.53322 1.06625 1.09922 1.19756 1.32229 1.09152 0.86513 0.89927 1.26082 0.95252 0.95717 1.02817 1.70125 1.24390 1.16570 1.39745 0.84889 0.78125 0.78551 0.76850 1.19656 1.18912 1.20341 1.17216 0.85170 0.83109 0.85518 1.90628 1.55292 1.37030 1.68115 1.19462 0.90412 1.10933 0.92420 1.41410 1.15064 1.47477 1.05954 0.73202 1.21000 0.96717 1.00534 0.83575 1.20642 0.95039 1.03326 0.95604 1.18227 0.97795 1.18400 0.89702 1.20138 0.73677 0.80911 0.84432 1.90808 1.56420 1.26459 1.67959 1.86708 1.64336 1.43835 1.32256 1.23388 0.99214 1.00540 0.79326 1.21829 1.00096 0.96527 1.01828 1.19526 0.97370 1.03503 0.89641 1.20257 0.91167 1.00488 1.02326 0.74663 0.87642 0.90528 0.91425 0.87871 0.89628 0.88519 0.90524 0.91350 0.91159 0.87819 0.91768 0.90703 0.92548 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.69 19.25 74.32 1.43 -8.26 16 2 C -0.15 -6.72 11.63 31.13 0.36 -6.35 16 3 C 0.23 10.89 4.92 84.57 0.42 11.31 16 4 N -0.42 -21.76 2.60 -649.95 -1.69 -23.45 16 5 C -0.35 -19.37 9.36 84.09 0.79 -18.59 16 6 H 0.08 4.89 7.36 -2.91 -0.02 4.87 16 7 C 0.01 0.26 5.06 84.95 0.43 0.69 16 8 N -0.87 -44.23 9.09 21.68 0.20 -44.04 16 9 Si 0.99 41.09 29.58 68.60 2.03 43.12 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 12 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 13 C 0.50 25.59 6.96 86.45 0.60 26.19 16 14 O -0.62 -36.53 16.78 -4.42 -0.07 -36.60 16 15 C -0.02 -0.79 5.33 39.99 0.21 -0.58 16 16 N -0.51 -16.89 6.01 -171.63 -1.03 -17.92 16 17 H 0.43 12.65 8.96 -92.71 -0.83 11.81 16 18 C 0.10 3.01 7.21 42.20 0.30 3.31 16 19 C -0.09 -1.64 10.24 71.24 0.73 -0.91 16 20 C -0.23 -7.88 6.01 -20.13 -0.12 -8.00 16 21 C 0.56 17.79 7.14 70.19 0.50 18.29 16 22 O -0.53 -18.49 16.90 19.74 0.33 -18.15 16 23 O -0.35 -9.56 10.23 -56.74 -0.58 -10.14 16 24 C 0.05 0.94 6.20 71.98 0.45 1.38 16 25 C -0.15 -1.89 10.29 71.98 0.74 -1.15 16 26 C -0.09 -3.58 5.32 -19.52 -0.10 -3.69 16 27 C -0.09 -2.98 9.88 71.24 0.70 -2.28 16 28 H 0.24 6.99 7.80 -4.42 -0.03 6.96 16 29 H 0.11 5.18 6.11 -2.39 -0.01 5.17 16 30 H 0.08 3.32 6.13 -2.39 -0.01 3.30 16 31 H 0.28 13.16 8.31 -92.71 -0.77 12.39 16 32 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.56 7.93 -2.38 -0.02 1.54 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.07 2.50 8.04 -2.39 -0.02 2.48 16 41 H 0.06 2.12 7.91 -2.39 -0.02 2.11 16 42 H 0.08 2.38 8.05 -2.39 -0.02 2.36 16 Total: -1.00 -72.59 370.89 6.85 -65.74 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.22 Total: 30.07 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 7.44 Total: 11.37 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -2.53 Total: -85.40 kcal Atomic # 8 Polarization: -64.58 SS G_CDS: -0.32 Total: -64.90 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -72.59 6.85 -65.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281520696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.545 kcal (2) G-P(sol) polarization free energy of solvation -72.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds