Wall clock time and date at job start Tue Mar 31 2020 12:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47595 * 2 1 4 4 O 1.21254 * 119.99280 * 359.97438 * 3 2 1 5 5 C 1.47186 * 120.00268 * 179.97438 * 3 2 1 6 6 C 1.39893 * 120.13327 * 359.72335 * 5 3 2 7 7 C 1.37927 * 119.97533 * 179.72459 * 6 5 3 8 8 C 1.38278 * 120.25389 * 0.57825 * 7 6 5 9 9 C 1.39043 * 120.27641 * 359.69392 * 8 7 6 10 10 N 1.39762 * 119.98977 * 180.02562 * 9 8 7 11 11 C 1.34776 * 119.99685 * 209.28718 * 10 9 8 12 12 O 1.21374 * 120.00301 * 5.63220 * 11 10 9 13 13 C 1.49360 * 120.00123 * 185.63508 * 11 10 9 14 14 O 1.21365 * 119.99695 * 0.67192 * 13 11 10 15 15 N 1.34769 * 120.00391 * 180.67097 * 13 11 10 16 16 C 1.46503 * 120.00079 * 354.40426 * 15 13 11 17 17 C 1.46504 * 120.00251 * 174.39479 * 15 13 11 18 18 C 1.50699 * 109.46906 * 90.00188 * 17 15 13 19 19 H 1.08011 * 119.99823 * 0.02562 * 18 17 15 20 20 C 1.37879 * 120.00075 * 180.02562 * 18 17 15 21 21 N 1.31505 * 120.00082 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99779 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.47342 * 90.00146 * 22 20 18 24 24 H 1.48503 * 109.46996 * 209.99633 * 22 20 18 25 25 H 1.48500 * 109.47719 * 329.99853 * 22 20 18 26 26 C 1.38627 * 120.01743 * 0.02562 * 9 8 7 27 27 H 1.08999 * 109.47179 * 300.00063 * 1 2 3 28 28 H 1.09002 * 109.46924 * 60.00240 * 1 2 3 29 29 H 1.09001 * 109.47269 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46959 * 120.00314 * 2 1 3 31 31 H 1.09007 * 109.47078 * 239.99631 * 2 1 3 32 32 H 1.08005 * 120.01301 * 359.97438 * 6 5 3 33 33 H 1.07998 * 119.86641 * 180.29505 * 7 6 5 34 34 H 1.08003 * 119.86210 * 179.72088 * 8 7 6 35 35 H 0.96993 * 120.00606 * 29.28812 * 10 9 8 36 36 H 1.08996 * 109.47418 * 83.75512 * 16 15 13 37 37 H 1.08996 * 109.46818 * 203.75740 * 16 15 13 38 38 H 1.09000 * 109.46351 * 323.75420 * 16 15 13 39 39 H 1.08996 * 109.47664 * 210.00297 * 17 15 13 40 40 H 1.09001 * 109.47254 * 330.00834 * 17 15 13 41 41 H 0.96996 * 120.00267 * 180.02562 * 21 20 18 42 42 H 1.07997 * 120.12572 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 8 1.2445 2.3423 -0.0005 5 6 3.4795 1.6896 0.0006 6 6 4.3910 0.6284 0.0070 7 6 5.7464 0.8841 0.0017 8 6 6.2096 2.1870 0.0022 9 6 5.3130 3.2498 0.0016 10 7 5.7878 4.5643 0.0016 11 6 5.0589 5.5440 0.5720 12 8 4.0412 5.2709 1.1745 13 6 5.5033 6.9657 0.4628 14 8 6.5143 7.2400 -0.1501 15 7 4.7818 7.9440 1.0447 16 6 3.4990 7.6298 1.6788 17 6 5.2803 9.3216 1.0434 18 6 4.7839 10.0342 -0.1882 19 1 4.1592 9.5130 -0.8987 20 6 5.1272 11.3513 -0.4081 21 7 5.8882 11.9856 0.4567 22 14 4.5113 12.2347 -1.9344 23 1 3.2080 12.8828 -1.6393 24 1 5.4974 13.2683 -2.3399 25 1 4.3387 11.2555 -3.0374 26 6 3.9484 3.0058 0.0010 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 4.0336 -0.3907 0.0119 33 1 6.4485 0.0635 0.0018 34 1 7.2722 2.3800 0.0027 35 1 6.6417 4.7716 -0.4089 36 1 3.6733 7.2717 2.6934 37 1 2.8805 8.5267 1.7112 38 1 2.9890 6.8572 1.1034 39 1 4.9202 9.8392 1.9325 40 1 6.3702 9.3137 1.0440 41 1 6.1294 12.9124 0.3023 42 1 3.2504 3.8300 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283409886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:26 Heat of formation + Delta-G solvation = -67.463587 kcal Electronic energy + Delta-G solvation = -25864.163819 eV Core-core repulsion = 22003.059652 eV Total energy + Delta-G solvation = -3861.104166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.04308 -39.98810 -38.73705 -37.70619 -35.65678 -34.47548 -33.17257 -32.59951 -31.42856 -30.06363 -28.07155 -26.30443 -25.85896 -24.70194 -23.12727 -22.92881 -21.56942 -19.88037 -19.49452 -17.88030 -17.22689 -16.66518 -16.64723 -16.01226 -15.88350 -15.71504 -15.47284 -15.30985 -14.86998 -14.48039 -14.26816 -14.02602 -13.71420 -13.45976 -13.14857 -12.77072 -12.58801 -12.40868 -12.39233 -12.12869 -12.09972 -12.01694 -11.67122 -11.47628 -11.31426 -10.99343 -10.78148 -10.66445 -10.54378 -10.21486 -9.90409 -9.70327 -9.26047 -8.85833 -8.49773 -8.38194 -7.83820 -6.11005 -4.16225 0.40442 1.00649 1.79735 2.24243 2.59124 3.28682 3.34804 3.39665 3.48918 3.66756 3.73018 3.98973 4.40310 4.51582 4.62567 4.72970 4.75739 4.78825 4.80754 4.95993 5.15212 5.21161 5.23940 5.40683 5.50549 5.60895 5.61644 5.90256 5.91922 5.98352 6.01871 6.09306 6.10261 6.15467 6.46876 6.68173 6.78157 7.09372 7.23902 7.32915 7.34623 7.77014 7.86299 8.11094 8.15089 8.57405 8.88107 9.48828 10.97299 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018338 B = 0.002829 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.538423 B = 9894.100069 C =10691.500039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.168 4.168 3 C 0.392 3.608 4 O -0.443 6.443 5 C -0.152 4.152 6 C -0.096 4.096 7 C -0.111 4.111 8 C -0.117 4.117 9 C 0.143 3.857 10 N -0.652 5.652 11 C 0.507 3.493 12 O -0.495 6.495 13 C 0.494 3.506 14 O -0.521 6.521 15 N -0.561 5.561 16 C 0.077 3.923 17 C 0.242 3.758 18 C -0.529 4.529 19 H 0.060 0.940 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.070 4.070 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.425 0.575 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.042 0.958 40 H 0.047 0.953 41 H 0.265 0.735 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.049 -26.532 0.435 26.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C 0.269 3.731 4 O -0.317 6.317 5 C -0.154 4.154 6 C -0.115 4.115 7 C -0.129 4.129 8 C -0.138 4.138 9 C 0.049 3.951 10 N -0.299 5.299 11 C 0.290 3.710 12 O -0.369 6.369 13 C 0.274 3.726 14 O -0.399 6.399 15 N -0.292 5.292 16 C -0.066 4.066 17 C 0.124 3.876 18 C -0.568 4.568 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.532 5.532 22 Si 0.729 3.271 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.090 4.090 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.263 0.737 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.600 -25.755 0.604 26.012 hybrid contribution 0.291 0.640 -0.947 1.179 sum -3.309 -25.115 -0.343 25.335 Atomic orbital electron populations 1.21608 0.93598 1.01771 1.03299 1.21974 0.98389 0.95589 1.04553 1.22531 0.87718 0.91309 0.71572 1.90563 1.58189 1.47755 1.35181 1.20395 0.95159 0.93648 1.06165 1.21369 0.92937 0.98473 0.98715 1.20890 0.95500 0.96051 1.00490 1.21172 0.99582 0.91836 1.01204 1.17728 0.92871 0.83901 1.00641 1.43312 1.24679 1.05040 1.56856 1.21079 0.83813 0.87781 0.78301 1.90713 1.23686 1.83567 1.38934 1.19474 0.85571 0.84995 0.82530 1.90750 1.25654 1.82923 1.40567 1.48141 1.19910 1.09741 1.51387 1.22065 0.85090 1.01861 0.97550 1.19536 0.96536 0.73604 0.97918 1.21375 1.32011 0.96425 1.06986 0.92214 1.24928 0.94886 0.97242 0.96940 1.69920 1.36050 1.11493 1.35785 0.86444 0.78470 0.79288 0.82936 1.20518 1.21015 1.19812 1.21588 0.94489 0.97382 0.95568 0.91995 0.92047 0.92037 0.88316 0.88328 0.85024 0.84890 0.84896 0.73711 0.93068 0.90927 0.89965 0.94048 0.93503 0.92564 0.83024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.20 37.16 0.34 -0.73 16 2 C -0.17 -1.13 5.03 -27.88 -0.14 -1.27 16 3 C 0.39 4.36 7.12 -30.68 -0.22 4.14 16 4 O -0.44 -6.69 15.97 5.58 0.09 -6.60 16 5 C -0.15 -1.69 5.87 -105.09 -0.62 -2.31 16 6 C -0.10 -0.75 9.47 -39.08 -0.37 -1.12 16 7 C -0.11 -0.83 10.02 -39.68 -0.40 -1.22 16 8 C -0.12 -1.09 9.94 -39.27 -0.39 -1.48 16 9 C 0.14 1.81 6.35 -83.80 -0.53 1.28 16 10 N -0.65 -9.16 5.33 -10.33 -0.06 -9.22 16 11 C 0.51 8.84 7.53 -11.63 -0.09 8.75 16 12 O -0.50 -9.01 10.69 5.48 0.06 -8.95 16 13 C 0.49 10.42 7.72 -11.63 -0.09 10.33 16 14 O -0.52 -12.23 16.12 5.48 0.09 -12.14 16 15 N -0.56 -12.39 2.86 -183.50 -0.52 -12.92 16 16 C 0.08 1.44 9.27 59.85 0.55 1.99 16 17 C 0.24 6.30 5.09 -5.19 -0.03 6.27 16 18 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 19 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 22 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.07 -0.97 8.22 -38.89 -0.32 -1.29 16 27 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 28 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.10 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.10 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.13 0.59 7.04 -52.48 -0.37 0.22 16 33 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 34 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.42 5.27 8.28 -40.82 -0.34 4.93 16 36 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 37 H 0.07 1.32 8.02 -51.93 -0.42 0.90 16 38 H 0.08 1.50 5.84 -51.93 -0.30 1.19 16 39 H 0.04 1.08 8.07 -51.93 -0.42 0.66 16 40 H 0.05 1.33 7.51 -51.93 -0.39 0.94 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.15 2.53 5.71 -52.49 -0.30 2.23 16 LS Contribution 362.14 15.07 5.46 5.46 Total: -1.00 -34.09 362.14 -7.33 -41.43 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.45 Total: 1.88 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: -2.71 Total: 9.73 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.16 Total: -47.60 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: 0.24 Total: -27.68 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.09 -7.33 -41.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283409886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.034 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds