Wall clock time and date at job start Tue Mar 31 2020 12:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47595 * 2 1 4 4 O 1.21254 * 119.99280 * 359.97438 * 3 2 1 5 5 C 1.47186 * 120.00268 * 179.97438 * 3 2 1 6 6 C 1.39893 * 120.13327 * 359.72335 * 5 3 2 7 7 C 1.37927 * 119.97533 * 179.72459 * 6 5 3 8 8 C 1.38278 * 120.25389 * 0.57825 * 7 6 5 9 9 C 1.39043 * 120.27641 * 359.69392 * 8 7 6 10 10 N 1.39762 * 119.98977 * 180.02562 * 9 8 7 11 11 C 1.34776 * 119.99685 * 209.28718 * 10 9 8 12 12 O 1.21374 * 120.00301 * 5.63220 * 11 10 9 13 13 C 1.49360 * 120.00123 * 185.63508 * 11 10 9 14 14 O 1.21365 * 119.99695 * 0.67192 * 13 11 10 15 15 N 1.34769 * 120.00391 * 180.67097 * 13 11 10 16 16 C 1.46503 * 120.00079 * 354.40426 * 15 13 11 17 17 C 1.46504 * 120.00251 * 174.39479 * 15 13 11 18 18 C 1.50699 * 109.46906 * 90.00188 * 17 15 13 19 19 H 1.08011 * 119.99823 * 0.02562 * 18 17 15 20 20 C 1.37879 * 120.00075 * 180.02562 * 18 17 15 21 21 N 1.31505 * 120.00082 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99779 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.47342 * 90.00146 * 22 20 18 24 24 H 1.48503 * 109.46996 * 209.99633 * 22 20 18 25 25 H 1.48500 * 109.47719 * 329.99853 * 22 20 18 26 26 C 1.38627 * 120.01743 * 0.02562 * 9 8 7 27 27 H 1.08999 * 109.47179 * 300.00063 * 1 2 3 28 28 H 1.09002 * 109.46924 * 60.00240 * 1 2 3 29 29 H 1.09001 * 109.47269 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46959 * 120.00314 * 2 1 3 31 31 H 1.09007 * 109.47078 * 239.99631 * 2 1 3 32 32 H 1.08005 * 120.01301 * 359.97438 * 6 5 3 33 33 H 1.07998 * 119.86641 * 180.29505 * 7 6 5 34 34 H 1.08003 * 119.86210 * 179.72088 * 8 7 6 35 35 H 0.96993 * 120.00606 * 29.28812 * 10 9 8 36 36 H 1.08996 * 109.47418 * 83.75512 * 16 15 13 37 37 H 1.08996 * 109.46818 * 203.75740 * 16 15 13 38 38 H 1.09000 * 109.46351 * 323.75420 * 16 15 13 39 39 H 1.08996 * 109.47664 * 210.00297 * 17 15 13 40 40 H 1.09001 * 109.47254 * 330.00834 * 17 15 13 41 41 H 0.96996 * 120.00267 * 180.02562 * 21 20 18 42 42 H 1.07997 * 120.12572 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 8 1.2445 2.3423 -0.0005 5 6 3.4795 1.6896 0.0006 6 6 4.3910 0.6284 0.0070 7 6 5.7464 0.8841 0.0017 8 6 6.2096 2.1870 0.0022 9 6 5.3130 3.2498 0.0016 10 7 5.7878 4.5643 0.0016 11 6 5.0589 5.5440 0.5720 12 8 4.0412 5.2709 1.1745 13 6 5.5033 6.9657 0.4628 14 8 6.5143 7.2400 -0.1501 15 7 4.7818 7.9440 1.0447 16 6 3.4990 7.6298 1.6788 17 6 5.2803 9.3216 1.0434 18 6 4.7839 10.0342 -0.1882 19 1 4.1592 9.5130 -0.8987 20 6 5.1272 11.3513 -0.4081 21 7 5.8882 11.9856 0.4567 22 14 4.5113 12.2347 -1.9344 23 1 3.2080 12.8828 -1.6393 24 1 5.4974 13.2683 -2.3399 25 1 4.3387 11.2555 -3.0374 26 6 3.9484 3.0058 0.0010 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 4.0336 -0.3907 0.0119 33 1 6.4485 0.0635 0.0018 34 1 7.2722 2.3800 0.0027 35 1 6.6417 4.7716 -0.4089 36 1 3.6733 7.2717 2.6934 37 1 2.8805 8.5267 1.7112 38 1 2.9890 6.8572 1.1034 39 1 4.9202 9.8392 1.9325 40 1 6.3702 9.3137 1.0440 41 1 6.1294 12.9124 0.3023 42 1 3.2504 3.8300 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283409886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:26 Heat of formation + Delta-G solvation = -90.525946 kcal Electronic energy + Delta-G solvation = -25865.163877 eV Core-core repulsion = 22003.059652 eV Total energy + Delta-G solvation = -3862.104225 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.29746 -41.02540 -40.01269 -38.94164 -37.20934 -35.87022 -34.70722 -33.83085 -32.18763 -31.02445 -30.06162 -27.86271 -26.70699 -26.33384 -24.55301 -23.69545 -22.81122 -21.02328 -20.65192 -19.00781 -18.78418 -18.55076 -17.85075 -17.26640 -17.02825 -16.81752 -16.63189 -16.42697 -16.36469 -15.83963 -15.52773 -15.06891 -14.95912 -14.57225 -14.37473 -14.23125 -13.94546 -13.71899 -13.64570 -13.40221 -13.13085 -13.01622 -12.88322 -12.77852 -12.64583 -12.45381 -12.28848 -12.19703 -12.00721 -11.79904 -11.62737 -10.72255 -10.68567 -10.47247 -10.00315 -9.71629 -9.28730 -8.28460 -6.43051 -0.39744 -0.03074 0.57573 1.21343 1.36366 1.37930 1.43186 1.49302 2.05313 2.33549 2.49885 2.80124 2.97866 3.02422 3.22674 3.85865 3.96629 4.08094 4.19860 4.27193 4.30444 4.32933 4.39730 4.44537 4.60067 4.75063 4.80670 4.90300 4.95860 5.00568 5.07519 5.07955 5.16489 5.20848 5.30078 5.35408 5.36671 5.39822 5.64532 5.85696 5.90076 5.94839 6.30845 6.56795 6.58313 6.64725 6.89840 7.27146 8.79386 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018338 B = 0.002829 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.538423 B = 9894.100069 C =10691.500039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.159 4.159 3 C 0.387 3.613 4 O -0.501 6.501 5 C -0.171 4.171 6 C -0.070 4.070 7 C -0.101 4.101 8 C -0.106 4.106 9 C 0.111 3.889 10 N -0.636 5.636 11 C 0.514 3.486 12 O -0.507 6.507 13 C 0.489 3.511 14 O -0.552 6.552 15 N -0.571 5.571 16 C 0.083 3.917 17 C 0.257 3.743 18 C -0.549 4.549 19 H 0.050 0.950 20 C 0.014 3.986 21 N -0.923 5.923 22 Si 0.969 3.031 23 H -0.265 1.265 24 H -0.276 1.276 25 H -0.274 1.274 26 C -0.101 4.101 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.179 0.821 33 H 0.179 0.821 34 H 0.158 0.842 35 H 0.431 0.569 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.036 0.964 40 H 0.015 0.985 41 H 0.270 0.730 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 -30.484 -0.244 30.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.196 4.196 3 C 0.268 3.732 4 O -0.379 6.379 5 C -0.173 4.173 6 C -0.089 4.089 7 C -0.119 4.119 8 C -0.126 4.126 9 C 0.018 3.982 10 N -0.283 5.283 11 C 0.297 3.703 12 O -0.382 6.382 13 C 0.271 3.729 14 O -0.431 6.431 15 N -0.302 5.302 16 C -0.059 4.059 17 C 0.136 3.864 18 C -0.587 4.587 19 H 0.069 0.931 20 C -0.186 4.186 21 N -0.562 5.562 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.199 1.199 26 C -0.122 4.122 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.196 0.804 33 H 0.197 0.803 34 H 0.176 0.824 35 H 0.271 0.729 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.054 0.946 40 H 0.033 0.967 41 H 0.079 0.921 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.992 -29.775 -0.072 29.925 hybrid contribution 0.159 1.696 -0.729 1.853 sum -2.833 -28.079 -0.801 28.233 Atomic orbital electron populations 1.21637 0.94526 1.02908 1.01491 1.22072 0.97574 0.92545 1.07391 1.23358 0.87542 0.92894 0.69429 1.90550 1.59375 1.49835 1.38164 1.20613 0.96038 0.93460 1.07185 1.21904 0.92549 0.99421 0.94995 1.21470 0.96156 0.96206 0.98020 1.21565 1.00295 0.91657 0.99057 1.17946 0.93123 0.83531 1.03633 1.43107 1.24205 1.05335 1.55650 1.20205 0.84144 0.86660 0.79326 1.90717 1.24158 1.83349 1.39996 1.20120 0.84852 0.86592 0.81364 1.90709 1.26848 1.83918 1.41662 1.48121 1.21179 1.08774 1.52163 1.22141 0.83583 1.01939 0.98235 1.19076 0.94541 0.75701 0.97043 1.21596 1.32351 0.97141 1.07650 0.93129 1.25800 0.94851 0.97919 1.00054 1.70019 1.36741 1.12010 1.37451 0.85400 0.78540 0.77995 0.78789 1.19034 1.20078 1.19938 1.21426 0.94577 0.97896 0.98257 0.93973 0.93900 0.89235 0.85183 0.85031 0.80395 0.80332 0.82393 0.72943 0.91305 0.90807 0.89708 0.94633 0.96691 0.92094 0.87208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.20 71.98 0.66 -1.31 16 2 C -0.16 -1.62 5.03 29.85 0.15 -1.47 16 3 C 0.39 8.39 7.12 28.04 0.20 8.58 16 4 O -0.50 -16.17 15.97 -2.95 -0.05 -16.22 16 5 C -0.17 -3.57 5.87 -20.17 -0.12 -3.69 16 6 C -0.07 -0.75 9.47 22.60 0.21 -0.54 16 7 C -0.10 -0.94 10.02 22.21 0.22 -0.72 16 8 C -0.11 -1.61 9.94 22.47 0.22 -1.39 16 9 C 0.11 2.75 6.35 38.16 0.24 2.99 16 10 N -0.64 -18.28 5.33 -304.95 -1.63 -19.91 16 11 C 0.51 18.82 7.53 87.24 0.66 19.48 16 12 O -0.51 -19.47 10.69 -3.32 -0.04 -19.51 16 13 C 0.49 21.69 7.72 87.24 0.67 22.36 16 14 O -0.55 -27.19 16.12 -3.29 -0.05 -27.24 16 15 N -0.57 -26.55 2.86 -852.84 -2.44 -28.99 16 16 C 0.08 3.21 9.27 127.77 1.18 4.39 16 17 C 0.26 14.02 5.09 85.63 0.44 14.45 16 18 C -0.55 -32.11 9.39 25.60 0.24 -31.87 16 19 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 20 C 0.01 0.78 5.46 84.66 0.46 1.25 16 21 N -0.92 -55.21 13.29 21.45 0.28 -54.92 16 22 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 26 C -0.10 -2.89 8.22 22.72 0.19 -2.70 16 27 H 0.04 0.71 8.10 -2.39 -0.02 0.69 16 28 H 0.04 0.71 8.10 -2.39 -0.02 0.70 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.13 0.58 8.08 -2.39 -0.02 0.56 16 31 H 0.13 0.54 8.09 -2.38 -0.02 0.52 16 32 H 0.18 0.27 7.04 -2.91 -0.02 0.25 16 33 H 0.18 0.20 8.06 -2.91 -0.02 0.18 16 34 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 35 H 0.43 10.85 8.28 -92.71 -0.77 10.08 16 36 H 0.07 2.39 8.13 -2.39 -0.02 2.37 16 37 H 0.07 2.79 8.02 -2.39 -0.02 2.77 16 38 H 0.08 3.25 5.84 -2.39 -0.01 3.24 16 39 H 0.04 1.95 8.07 -2.39 -0.02 1.93 16 40 H 0.02 0.90 7.51 -2.39 -0.02 0.89 16 41 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 42 H 0.11 4.03 5.71 -2.91 -0.02 4.02 16 Total: -1.00 -80.90 362.14 4.04 -76.86 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.29 Total: 12.86 kcal Atomic # 6 Polarization: 24.18 SS G_CDS: 5.64 Total: 29.82 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -3.78 Total: -103.82 kcal Atomic # 8 Polarization: -62.83 SS G_CDS: -0.14 Total: -62.97 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -80.90 4.04 -76.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283409886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.668 kcal (2) G-P(sol) polarization free energy of solvation -80.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds