Wall clock time and date at job start Tue Mar 31 2020 13:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47540 * 2 1 4 4 C 1.46506 * 119.99800 * 269.99581 * 3 2 1 5 5 C 1.50699 * 109.47352 * 269.99857 * 4 3 2 6 6 H 1.08000 * 119.99828 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00146 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99841 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00215 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47025 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46976 * 120.00048 * 9 7 5 12 12 H 1.48503 * 109.46927 * 239.99950 * 9 7 5 13 13 C 1.34773 * 120.00231 * 90.00038 * 3 2 1 14 14 O 1.21283 * 120.00360 * 179.72577 * 13 3 2 15 15 C 1.50706 * 120.00081 * 359.97438 * 13 3 2 16 16 N 1.46493 * 109.47128 * 179.72554 * 15 13 3 17 17 C 1.39725 * 119.99716 * 179.97438 * 16 15 13 18 18 C 1.39170 * 120.10620 * 0.02562 * 17 16 15 19 19 C 1.38211 * 120.13697 * 179.97438 * 18 17 16 20 20 C 1.38037 * 120.41394 * 359.97128 * 19 18 17 21 21 C 1.39613 * 119.94668 * 0.03096 * 20 19 18 22 22 C 1.38191 * 120.09919 * 179.72247 * 17 16 15 23 23 C 1.50782 * 133.39413 * 0.02562 * 22 17 16 24 24 O 1.45394 * 106.40809 * 180.02562 * 23 22 17 25 25 C 1.34360 * 108.99639 * 359.53153 * 24 23 22 26 26 O 1.21468 * 124.89163 * 179.97438 * 25 24 23 27 27 H 1.08994 * 109.46887 * 300.00656 * 1 2 3 28 28 H 1.09001 * 109.46388 * 60.00135 * 1 2 3 29 29 H 1.08990 * 109.47469 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47326 * 239.99182 * 2 1 3 31 31 H 1.09006 * 109.46825 * 120.00024 * 2 1 3 32 32 H 1.08995 * 109.47161 * 30.00561 * 4 3 2 33 33 H 1.09002 * 109.46900 * 149.99872 * 4 3 2 34 34 H 0.97007 * 120.00044 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46564 * 299.73030 * 15 13 3 36 36 H 1.08998 * 109.47012 * 59.72084 * 15 13 3 37 37 H 0.97005 * 120.00530 * 0.02562 * 16 15 13 38 38 H 1.08011 * 119.93001 * 359.97438 * 18 17 16 39 39 H 1.08003 * 119.79608 * 180.02562 * 19 18 17 40 40 H 1.07995 * 120.02311 * 180.02562 * 20 19 18 41 41 H 1.09000 * 110.06562 * 299.25719 * 23 22 17 42 42 H 1.08996 * 110.06665 * 60.72913 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0716 -1.2688 5 6 3.6860 1.8348 -1.7038 6 1 4.3428 1.2300 -1.0961 7 6 4.1494 2.3893 -2.8779 8 7 3.3494 3.1253 -3.6181 9 14 5.9134 2.0951 -3.4175 10 1 6.6010 1.2401 -2.4168 11 1 5.9204 1.4158 -4.7380 12 1 6.6212 3.3960 -3.5263 13 6 2.2431 2.0164 1.1671 14 8 2.6522 3.1582 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3151 2.2016 3.5857 17 6 2.1600 1.7624 4.9031 18 6 1.6987 0.4748 5.1599 19 6 1.5456 0.0395 6.4627 20 6 1.8484 0.8752 7.5189 21 6 2.3120 2.1690 7.2731 22 6 2.4703 2.6032 5.9550 23 6 2.9855 4.0181 6.0329 24 8 3.1067 4.3338 7.4470 25 6 2.7121 3.2707 8.1678 26 8 2.6970 3.2210 9.3813 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0275 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.5819 1.6876 -2.0284 33 1 2.0958 3.1409 -1.1385 34 1 3.6753 3.5152 -4.4445 35 1 0.9422 1.0169 2.5319 36 1 2.6175 0.4159 2.5281 37 1 2.6365 3.0995 3.4085 38 1 1.4598 -0.1858 4.3394 39 1 1.1875 -0.9610 6.6558 40 1 1.7268 0.5284 8.5344 41 1 3.9597 4.0886 5.5492 42 1 2.2811 4.6994 5.5557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290212286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:01 Heat of formation + Delta-G solvation = -96.792025 kcal Electronic energy + Delta-G solvation = -25952.482495 eV Core-core repulsion = 22090.106552 eV Total energy + Delta-G solvation = -3862.375943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.60479 -40.95600 -39.68342 -38.49830 -37.13216 -36.22516 -34.89915 -32.93574 -31.72830 -31.20607 -29.47548 -28.22621 -27.47725 -25.18018 -24.51667 -23.89239 -23.19516 -21.39637 -20.14484 -18.96044 -18.61398 -18.46237 -17.88783 -17.73077 -17.50784 -16.92334 -16.61248 -16.45221 -16.09640 -15.69854 -15.18359 -15.04602 -14.73948 -14.69324 -14.60003 -14.29383 -14.22455 -14.14632 -13.62425 -13.43991 -13.23394 -13.04909 -12.78637 -12.68587 -12.47989 -12.38935 -12.16708 -12.03459 -11.88420 -11.69206 -11.51830 -11.24477 -10.72692 -10.65608 -10.01306 -9.48243 -8.51942 -8.23486 -6.37754 -0.45986 0.42888 1.36559 1.38943 1.40327 1.49870 1.72599 1.96577 1.99895 2.36550 2.57583 2.69081 2.73449 3.07123 3.18231 3.54318 3.93152 4.10490 4.12164 4.20970 4.29709 4.34014 4.35901 4.38470 4.47857 4.48512 4.66871 4.69223 4.95336 5.02004 5.03398 5.08850 5.19928 5.22462 5.38554 5.44246 5.55247 5.56532 5.64767 5.82416 6.04907 6.13226 6.24978 6.54155 6.69626 6.77972 7.25430 7.40225 8.83665 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017782 B = 0.002845 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.213932 B = 9838.669948 C =10771.939612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.597 5.597 4 C 0.262 3.738 5 C -0.539 4.539 6 H 0.056 0.944 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.265 1.265 11 H -0.271 1.271 12 H -0.284 1.284 13 C 0.490 3.510 14 O -0.592 6.592 15 C 0.117 3.883 16 N -0.737 5.737 17 C 0.239 3.761 18 C -0.153 4.153 19 C -0.066 4.066 20 C -0.100 4.100 21 C -0.167 4.167 22 C -0.192 4.192 23 C 0.096 3.904 24 O -0.332 6.332 25 C 0.519 3.481 26 O -0.497 6.497 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.023 0.977 33 H -0.002 1.002 34 H 0.266 0.734 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.406 0.594 38 H 0.165 0.835 39 H 0.173 0.827 40 H 0.140 0.860 41 H 0.126 0.874 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.633 -11.390 16.180 20.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.327 5.327 4 C 0.140 3.860 5 C -0.578 4.578 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.189 1.189 11 H -0.197 1.197 12 H -0.211 1.211 13 C 0.278 3.722 14 O -0.473 6.473 15 C -0.010 4.010 16 N -0.368 5.368 17 C 0.135 3.865 18 C -0.175 4.175 19 C -0.084 4.084 20 C -0.120 4.120 21 C -0.170 4.170 22 C -0.197 4.197 23 C 0.023 3.977 24 O -0.247 6.247 25 C 0.364 3.636 26 O -0.386 6.386 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.128 0.872 32 H 0.041 0.959 33 H 0.016 0.984 34 H 0.075 0.925 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.243 0.757 38 H 0.182 0.818 39 H 0.190 0.810 40 H 0.158 0.842 41 H 0.143 0.857 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.414 -10.656 16.429 20.606 hybrid contribution 1.060 0.990 -0.966 1.743 sum -5.354 -9.666 15.463 19.005 Atomic orbital electron populations 1.22176 0.94461 1.03705 1.01778 1.21861 0.95357 0.80945 1.04538 1.48219 1.63241 1.15266 1.05988 1.18720 0.95251 0.91610 0.80412 1.21734 0.97894 1.31783 1.06401 0.92615 1.25823 1.02135 0.94574 0.96579 1.70053 1.37649 1.34329 1.14824 0.85408 0.79300 0.77915 0.78423 1.18946 1.19661 1.21056 1.21143 0.77627 0.86663 0.86738 1.90646 1.48250 1.20746 1.87691 1.21274 1.04211 0.93289 0.82269 1.44540 1.73189 1.17660 1.01361 1.16997 0.94472 0.92883 0.82194 1.21378 1.03186 0.93645 0.99284 1.21312 0.96091 1.00652 0.90364 1.20917 0.99116 0.90672 1.01284 1.20493 1.06708 0.96771 0.92994 1.20142 1.08744 0.97470 0.93371 1.22469 1.04892 0.93267 0.77098 1.87190 1.77733 1.38678 1.21114 1.20954 0.73351 0.82328 0.86970 1.90828 1.52299 1.82192 1.13281 0.91690 0.94657 0.88441 0.90936 0.87207 0.95897 0.98436 0.92480 0.86131 0.86589 0.75736 0.81751 0.80965 0.84186 0.85671 0.85515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 10.24 71.98 0.74 -2.35 16 2 C 0.09 2.27 5.93 86.38 0.51 2.79 16 3 N -0.60 -21.72 2.46 -826.15 -2.03 -23.75 16 4 C 0.26 13.08 5.16 85.63 0.44 13.53 16 5 C -0.54 -29.32 9.39 25.60 0.24 -29.08 16 6 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.44 5.46 84.65 0.46 0.90 16 8 N -0.93 -54.41 13.29 21.44 0.28 -54.12 16 9 Si 0.96 43.25 29.54 68.60 2.03 45.27 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 C 0.49 16.96 7.74 87.66 0.68 17.64 16 14 O -0.59 -26.70 15.25 -3.04 -0.05 -26.74 16 15 C 0.12 2.35 3.95 85.64 0.34 2.69 16 16 N -0.74 -15.68 5.71 -343.48 -1.96 -17.64 16 17 C 0.24 4.35 6.64 38.10 0.25 4.61 16 18 C -0.15 -1.93 9.32 22.49 0.21 -1.72 16 19 C -0.07 -0.74 10.01 22.22 0.22 -0.52 16 20 C -0.10 -1.66 10.10 22.55 0.23 -1.43 16 21 C -0.17 -3.67 6.27 -20.17 -0.13 -3.79 16 22 C -0.19 -3.87 6.29 -19.50 -0.12 -4.00 16 23 C 0.10 1.84 7.65 71.26 0.54 2.39 16 24 O -0.33 -8.43 11.13 -53.04 -0.59 -9.02 16 25 C 0.52 14.19 8.59 70.25 0.60 14.79 16 26 O -0.50 -16.43 18.04 19.63 0.35 -16.08 16 27 H 0.06 1.06 7.23 -2.39 -0.02 1.04 16 28 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.95 8.07 -2.39 -0.02 1.94 16 31 H 0.11 1.67 6.43 -2.38 -0.02 1.65 16 32 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 33 H 0.00 -0.15 7.43 -2.39 -0.02 -0.16 16 34 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 35 H 0.12 1.68 7.01 -2.39 -0.02 1.66 16 36 H 0.12 1.74 7.20 -2.39 -0.02 1.73 16 37 H 0.41 10.22 7.20 -92.70 -0.67 9.55 16 38 H 0.17 1.12 6.74 -2.90 -0.02 1.11 16 39 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 40 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.13 2.06 8.14 -2.39 -0.02 2.05 16 42 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -77.73 359.63 3.65 -74.07 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.39 Total: 11.56 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 5.22 Total: 16.44 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -3.70 Total: -95.52 kcal Atomic # 8 Polarization: -51.55 SS G_CDS: -0.28 Total: -51.83 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -77.73 3.65 -74.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290212286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.718 kcal (2) G-P(sol) polarization free energy of solvation -77.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds