Wall clock time and date at job start Tue Mar 31 2020 12:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 119.99729 * 2 1 4 4 N 1.46893 * 109.47176 * 124.99879 * 3 2 1 5 5 C 1.46899 * 111.00143 * 169.99759 * 4 3 2 6 6 C 1.50701 * 109.47377 * 293.95409 * 5 4 3 7 7 H 1.08001 * 119.99725 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00196 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00078 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99839 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47107 * 90.00030 * 10 8 6 12 12 H 1.48505 * 109.47124 * 209.99782 * 10 8 6 13 13 H 1.48495 * 109.47378 * 329.99829 * 10 8 6 14 14 C 1.38893 * 111.00134 * 293.94854 * 4 3 2 15 15 C 1.39331 * 119.90460 * 296.05212 * 14 4 3 16 16 C 1.36526 * 120.09716 * 179.97438 * 15 14 4 17 17 C 1.40132 * 119.90002 * 0.02562 * 16 15 14 18 18 C 1.46757 * 120.08940 * 180.02562 * 17 16 15 19 19 O 1.21308 * 119.99595 * 180.02562 * 18 17 16 20 20 C 1.50693 * 120.00401 * 0.02562 * 18 17 16 21 21 C 1.52998 * 109.47046 * 179.97438 * 20 18 17 22 22 C 1.40088 * 119.81470 * 0.02562 * 17 16 15 23 23 C 1.36575 * 119.89663 * 359.69960 * 22 17 16 24 24 N 1.48012 * 119.94804 * 180.31689 * 23 22 17 25 25 O 1.21805 * 120.00147 * 0.25354 * 24 23 22 26 26 O 1.21801 * 119.99683 * 180.25916 * 24 23 22 27 27 H 1.08002 * 119.99479 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.00202 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00202 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46953 * 244.99339 * 3 2 1 31 31 H 1.09000 * 109.47318 * 4.98937 * 3 2 1 32 32 H 1.09007 * 109.47273 * 53.95083 * 5 4 3 33 33 H 1.09003 * 109.47513 * 173.95066 * 5 4 3 34 34 H 0.97004 * 119.99709 * 179.97438 * 9 8 6 35 35 H 1.08008 * 119.95414 * 359.97438 * 15 14 4 36 36 H 1.07998 * 120.05058 * 180.02562 * 16 15 14 37 37 H 1.09005 * 109.46737 * 299.99515 * 20 18 17 38 38 H 1.08998 * 109.47529 * 59.99867 * 20 18 17 39 39 H 1.08998 * 109.47068 * 179.97438 * 21 20 18 40 40 H 1.08995 * 109.46946 * 299.99344 * 21 20 18 41 41 H 1.09001 * 109.47519 * 59.99792 * 21 20 18 42 42 H 1.07994 * 120.05070 * 180.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9962 1.3321 1.1345 5 6 3.9125 2.4761 1.0357 6 6 4.8098 2.2990 -0.1621 7 1 4.7097 1.4240 -0.7871 8 6 5.7592 3.2536 -0.4593 9 7 5.8814 4.3189 0.3021 10 14 6.8719 3.0337 -1.9435 11 1 6.2363 3.6524 -3.1346 12 1 8.1790 3.6888 -1.6836 13 1 7.0849 1.5853 -2.1923 14 6 2.3106 1.3465 2.3423 15 6 1.4972 2.4303 2.6665 16 6 0.8211 2.4483 3.8525 17 6 0.9467 1.3748 4.7445 18 6 0.2214 1.3896 6.0202 19 8 0.3316 0.4596 6.7913 20 6 -0.6603 2.5598 6.3723 21 6 -1.2951 2.3255 7.7445 22 6 1.7664 0.2877 4.4150 23 6 2.4347 0.2753 3.2240 24 7 3.2956 -0.8759 2.8717 25 8 3.4040 -1.8135 3.6416 26 8 3.8958 -0.8857 1.8118 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 2.6214 1.4026 -0.9313 31 1 1.3585 2.1317 0.0894 32 1 3.3362 3.3947 0.9252 33 1 4.5196 2.5345 1.9391 34 1 6.5496 4.9903 0.0931 35 1 1.4014 3.2574 1.9786 36 1 0.1905 3.2885 4.1028 37 1 -0.0618 3.4705 6.3991 38 1 -1.4446 2.6625 5.6223 39 1 -1.9325 3.1721 7.9993 40 1 -1.8936 1.4150 7.7171 41 1 -0.5111 2.2226 8.4947 42 1 1.8656 -0.5418 5.0994 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292017076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:43 Heat of formation + Delta-G solvation = 22.565116 kcal Electronic energy + Delta-G solvation = -26990.425120 eV Core-core repulsion = 23133.224892 eV Total energy + Delta-G solvation = -3857.200229 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.72211 -40.37216 -39.21766 -36.85965 -35.77993 -33.54094 -33.37885 -32.59970 -31.93688 -30.33819 -27.28480 -26.39469 -26.05793 -24.36784 -23.01135 -22.43868 -21.14822 -20.15724 -19.54182 -18.39922 -18.00219 -17.03326 -16.85958 -16.58912 -15.90129 -15.86865 -15.76113 -15.06346 -14.77977 -14.55540 -14.24509 -14.04302 -13.58544 -13.50024 -12.97296 -12.63640 -12.53093 -12.37061 -12.22473 -11.83621 -11.73634 -11.49297 -11.41459 -10.94405 -10.92687 -10.87301 -10.65435 -10.55873 -10.43528 -10.18554 -9.99754 -9.68684 -9.55372 -9.20843 -8.95234 -8.59910 -7.82564 -6.18169 -4.20102 0.09003 0.45943 1.63100 1.88494 2.15738 2.41525 3.26168 3.33686 3.36056 3.39899 3.64693 4.07427 4.37276 4.46091 4.54970 4.67204 4.77485 4.81098 4.86508 5.00830 5.17925 5.19345 5.29200 5.36301 5.45917 5.51076 5.60114 5.66056 5.74079 5.80609 5.89059 5.91551 6.10880 6.21324 6.27214 6.69725 6.79977 6.87335 6.92286 7.03363 7.23749 7.55722 7.63681 7.88859 8.22706 8.28407 8.86840 9.45026 10.92671 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.003943 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.488884 B = 7098.839692 C = 7562.441012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.138 4.138 3 C 0.094 3.906 4 N -0.501 5.501 5 C 0.202 3.798 6 C -0.509 4.509 7 H 0.072 0.928 8 C 0.059 3.941 9 N -0.898 5.898 10 Si 0.902 3.098 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.269 1.269 14 C 0.226 3.774 15 C -0.168 4.168 16 C -0.018 4.018 17 C -0.195 4.195 18 C 0.401 3.599 19 O -0.450 6.450 20 C -0.169 4.169 21 C -0.144 4.144 22 C 0.001 3.999 23 C -0.045 4.045 24 N 0.027 4.973 25 O -0.219 6.219 26 O -0.070 6.070 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.036 0.964 32 H 0.003 0.997 33 H 0.032 0.968 34 H 0.263 0.737 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.312 -0.662 7.456 17.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.156 4.156 3 C -0.031 4.031 4 N -0.223 5.223 5 C 0.081 3.919 6 C -0.547 4.547 7 H 0.091 0.909 8 C -0.143 4.143 9 N -0.537 5.537 10 Si 0.729 3.271 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.194 1.194 14 C 0.129 3.871 15 C -0.189 4.189 16 C -0.037 4.037 17 C -0.197 4.197 18 C 0.279 3.721 19 O -0.325 6.325 20 C -0.207 4.207 21 C -0.201 4.201 22 C -0.018 4.018 23 C -0.130 4.130 24 N 0.550 4.450 25 O -0.417 6.417 26 O -0.307 6.307 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.168 0.832 36 H 0.162 0.838 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.284 -0.927 8.176 17.358 hybrid contribution 0.540 0.548 -0.887 1.174 sum -14.744 -0.379 7.289 16.452 Atomic orbital electron populations 1.23765 0.95900 1.01324 1.03629 1.23241 0.95463 0.99743 0.97179 1.21292 0.93169 0.93076 0.95550 1.59909 1.16689 1.48757 0.96974 1.19910 0.89479 0.83406 0.99123 1.21056 1.17048 1.06483 1.10095 0.90940 1.24967 0.97224 0.94982 0.97168 1.69944 1.35096 1.10207 1.38497 0.86421 0.79788 0.78705 0.82160 1.20668 1.21238 1.19357 1.19228 0.87212 0.88755 0.91929 1.21723 0.98678 0.99753 0.98778 1.21405 0.94435 0.96146 0.91752 1.20329 1.04095 0.96585 0.98696 1.22278 0.78822 0.87054 0.83958 1.90558 1.56859 1.35796 1.49301 1.21991 1.00133 0.98367 1.00186 1.21597 1.01061 1.02074 0.95415 1.20887 0.89674 0.97988 0.93272 1.20872 1.02976 0.90688 0.98441 1.43305 1.00032 1.01026 1.00624 1.94492 1.70739 1.27740 1.48701 1.94690 1.41385 1.84593 1.10069 0.88853 0.88955 0.86786 0.86947 0.94610 0.97943 0.94951 0.92707 0.83220 0.83778 0.87999 0.88110 0.91898 0.92053 0.91999 0.82432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.70 14.32 29.01 0.42 -2.29 16 2 C -0.14 -2.12 9.09 -36.02 -0.33 -2.45 16 3 C 0.09 1.61 5.14 -4.98 -0.03 1.59 16 4 N -0.50 -9.85 2.32 -173.84 -0.40 -10.26 16 5 C 0.20 4.76 4.29 -4.98 -0.02 4.74 16 6 C -0.51 -13.21 8.37 -34.44 -0.29 -13.50 16 7 H 0.07 1.87 7.18 -52.49 -0.38 1.50 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -25.11 13.29 55.43 0.74 -24.37 16 10 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 14 C 0.23 3.90 3.95 -83.86 -0.33 3.57 16 15 C -0.17 -2.32 8.49 -39.79 -0.34 -2.65 16 16 C -0.02 -0.20 9.42 -39.49 -0.37 -0.57 16 17 C -0.20 -2.39 5.87 -105.05 -0.62 -3.00 16 18 C 0.40 4.44 7.10 -30.87 -0.22 4.22 16 19 O -0.45 -6.37 15.96 5.53 0.09 -6.28 16 20 C -0.17 -1.20 5.02 -27.89 -0.14 -1.34 16 21 C -0.14 -1.05 9.20 37.16 0.34 -0.71 16 22 C 0.00 0.02 9.05 -39.49 -0.36 -0.34 16 23 C -0.05 -0.79 6.83 -80.16 -0.55 -1.34 16 24 N 0.03 0.54 4.45 33.86 0.15 0.69 16 25 O -0.22 -4.36 18.42 -29.46 -0.54 -4.90 16 26 O -0.07 -1.50 17.09 -29.46 -0.50 -2.01 16 27 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.09 1.09 7.84 -52.49 -0.41 0.68 16 29 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 30 H 0.11 2.09 6.65 -51.93 -0.35 1.75 16 31 H 0.04 0.56 6.79 -51.93 -0.35 0.21 16 32 H 0.00 0.07 7.44 -51.93 -0.39 -0.32 16 33 H 0.03 0.85 8.06 -51.93 -0.42 0.44 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.15 1.94 7.08 -52.48 -0.37 1.57 16 36 H 0.14 0.94 7.03 -52.49 -0.37 0.57 16 37 H 0.10 0.56 8.08 -51.93 -0.42 0.14 16 38 H 0.10 0.51 8.08 -51.93 -0.42 0.09 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 41 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 42 H 0.16 2.38 7.16 -52.49 -0.38 2.00 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -30.49 364.15 -8.42 -38.92 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.49 Total: -0.39 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -2.92 Total: -12.60 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.48 Total: -33.94 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.96 Total: -13.19 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.49 -8.42 -38.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292017076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.482 kcal (2) G-P(sol) polarization free energy of solvation -30.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds