Wall clock time and date at job start Tue Mar 31 2020 12:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 119.99729 * 2 1 4 4 N 1.46893 * 109.47176 * 124.99879 * 3 2 1 5 5 C 1.46899 * 111.00143 * 169.99759 * 4 3 2 6 6 C 1.50701 * 109.47377 * 293.95409 * 5 4 3 7 7 H 1.08001 * 119.99725 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00196 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00078 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99839 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47107 * 90.00030 * 10 8 6 12 12 H 1.48505 * 109.47124 * 209.99782 * 10 8 6 13 13 H 1.48495 * 109.47378 * 329.99829 * 10 8 6 14 14 C 1.38893 * 111.00134 * 293.94854 * 4 3 2 15 15 C 1.39331 * 119.90460 * 296.05212 * 14 4 3 16 16 C 1.36526 * 120.09716 * 179.97438 * 15 14 4 17 17 C 1.40132 * 119.90002 * 0.02562 * 16 15 14 18 18 C 1.46757 * 120.08940 * 180.02562 * 17 16 15 19 19 O 1.21308 * 119.99595 * 180.02562 * 18 17 16 20 20 C 1.50693 * 120.00401 * 0.02562 * 18 17 16 21 21 C 1.52998 * 109.47046 * 179.97438 * 20 18 17 22 22 C 1.40088 * 119.81470 * 0.02562 * 17 16 15 23 23 C 1.36575 * 119.89663 * 359.69960 * 22 17 16 24 24 N 1.48012 * 119.94804 * 180.31689 * 23 22 17 25 25 O 1.21805 * 120.00147 * 0.25354 * 24 23 22 26 26 O 1.21801 * 119.99683 * 180.25916 * 24 23 22 27 27 H 1.08002 * 119.99479 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.00202 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00202 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46953 * 244.99339 * 3 2 1 31 31 H 1.09000 * 109.47318 * 4.98937 * 3 2 1 32 32 H 1.09007 * 109.47273 * 53.95083 * 5 4 3 33 33 H 1.09003 * 109.47513 * 173.95066 * 5 4 3 34 34 H 0.97004 * 119.99709 * 179.97438 * 9 8 6 35 35 H 1.08008 * 119.95414 * 359.97438 * 15 14 4 36 36 H 1.07998 * 120.05058 * 180.02562 * 16 15 14 37 37 H 1.09005 * 109.46737 * 299.99515 * 20 18 17 38 38 H 1.08998 * 109.47529 * 59.99867 * 20 18 17 39 39 H 1.08998 * 109.47068 * 179.97438 * 21 20 18 40 40 H 1.08995 * 109.46946 * 299.99344 * 21 20 18 41 41 H 1.09001 * 109.47519 * 59.99792 * 21 20 18 42 42 H 1.07994 * 120.05070 * 180.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9962 1.3321 1.1345 5 6 3.9125 2.4761 1.0357 6 6 4.8098 2.2990 -0.1621 7 1 4.7097 1.4240 -0.7871 8 6 5.7592 3.2536 -0.4593 9 7 5.8814 4.3189 0.3021 10 14 6.8719 3.0337 -1.9435 11 1 6.2363 3.6524 -3.1346 12 1 8.1790 3.6888 -1.6836 13 1 7.0849 1.5853 -2.1923 14 6 2.3106 1.3465 2.3423 15 6 1.4972 2.4303 2.6665 16 6 0.8211 2.4483 3.8525 17 6 0.9467 1.3748 4.7445 18 6 0.2214 1.3896 6.0202 19 8 0.3316 0.4596 6.7913 20 6 -0.6603 2.5598 6.3723 21 6 -1.2951 2.3255 7.7445 22 6 1.7664 0.2877 4.4150 23 6 2.4347 0.2753 3.2240 24 7 3.2956 -0.8759 2.8717 25 8 3.4040 -1.8135 3.6416 26 8 3.8958 -0.8857 1.8118 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 2.6214 1.4026 -0.9313 31 1 1.3585 2.1317 0.0894 32 1 3.3362 3.3947 0.9252 33 1 4.5196 2.5345 1.9391 34 1 6.5496 4.9903 0.0931 35 1 1.4014 3.2574 1.9786 36 1 0.1905 3.2885 4.1028 37 1 -0.0618 3.4705 6.3991 38 1 -1.4446 2.6625 5.6223 39 1 -1.9325 3.1721 7.9993 40 1 -1.8936 1.4150 7.7171 41 1 -0.5111 2.2226 8.4947 42 1 1.8656 -0.5418 5.0994 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292017076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:42 Heat of formation + Delta-G solvation = 6.856300 kcal Electronic energy + Delta-G solvation = -26991.106306 eV Core-core repulsion = 23133.224892 eV Total energy + Delta-G solvation = -3857.881414 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.16812 -41.52376 -40.35503 -38.15062 -37.32279 -35.09112 -34.37472 -34.00124 -32.99689 -31.61403 -29.03290 -27.65554 -27.24452 -25.73283 -24.25318 -23.63169 -22.56622 -21.28948 -20.73511 -19.65065 -19.38381 -18.63430 -18.41064 -17.80611 -17.23249 -17.00248 -16.82038 -16.49028 -15.81618 -15.76059 -15.71124 -15.34470 -14.79977 -14.37770 -14.26743 -14.03739 -13.73534 -13.45004 -13.23999 -13.10670 -12.80110 -12.72777 -12.66004 -12.53461 -12.48918 -12.16075 -12.15118 -12.06764 -11.99125 -11.86121 -11.45673 -10.90813 -10.79476 -10.65413 -10.39099 -10.16726 -9.32308 -8.22953 -6.30546 -1.18541 -0.70584 0.31889 0.51369 1.13784 1.27374 1.42095 1.44973 1.56251 2.27901 2.40211 2.72072 2.84036 3.11954 3.37932 3.60965 3.70595 3.75918 3.87831 4.04230 4.12275 4.19300 4.31735 4.33850 4.53676 4.59905 4.73041 4.77417 4.80189 4.91487 4.93588 5.04698 5.05711 5.09329 5.09657 5.18542 5.36932 5.39041 5.63502 5.68011 5.70719 5.98425 6.06906 6.39979 6.49906 6.68359 6.81989 7.38332 8.87793 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.003943 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.488884 B = 7098.839692 C = 7562.441012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.164 4.164 3 C 0.100 3.900 4 N -0.515 5.515 5 C 0.224 3.776 6 C -0.519 4.519 7 H 0.064 0.936 8 C 0.011 3.989 9 N -0.929 5.929 10 Si 0.962 3.038 11 H -0.267 1.267 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.200 3.800 15 C -0.169 4.169 16 C 0.018 3.982 17 C -0.185 4.185 18 C 0.404 3.596 19 O -0.487 6.487 20 C -0.163 4.163 21 C -0.147 4.147 22 C -0.009 4.009 23 C -0.063 4.063 24 N 0.031 4.969 25 O -0.218 6.218 26 O -0.126 6.126 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.056 0.944 32 H -0.002 1.002 33 H -0.006 1.006 34 H 0.265 0.735 35 H 0.163 0.837 36 H 0.205 0.795 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.504 1.434 8.020 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.183 4.183 3 C -0.025 4.025 4 N -0.237 5.237 5 C 0.101 3.899 6 C -0.558 4.558 7 H 0.082 0.918 8 C -0.188 4.188 9 N -0.570 5.570 10 Si 0.787 3.213 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.196 1.196 14 C 0.103 3.897 15 C -0.189 4.189 16 C -0.001 4.001 17 C -0.186 4.186 18 C 0.284 3.716 19 O -0.364 6.364 20 C -0.200 4.200 21 C -0.204 4.204 22 C -0.028 4.028 23 C -0.147 4.147 24 N 0.548 4.452 25 O -0.420 6.420 26 O -0.352 6.352 27 H 0.128 0.872 28 H 0.132 0.868 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.016 0.984 33 H 0.012 0.988 34 H 0.074 0.926 35 H 0.180 0.820 36 H 0.222 0.778 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.462 1.170 8.656 20.424 hybrid contribution 1.350 -0.130 -0.869 1.611 sum -17.112 1.040 7.787 18.829 Atomic orbital electron populations 1.24007 0.94716 1.03071 0.99379 1.22929 0.96289 0.97970 1.01064 1.21214 0.92847 0.94822 0.93601 1.59549 1.18110 1.47043 0.99019 1.19419 0.89576 0.84722 0.96220 1.21346 1.17590 1.06005 1.10814 0.91784 1.25727 0.98544 0.94766 0.99715 1.70038 1.35924 1.10969 1.40032 0.85485 0.77982 0.78371 0.79450 1.19266 1.21095 1.19604 1.19329 0.88963 0.90266 0.91143 1.21905 0.98077 0.98612 1.00333 1.21942 0.92530 0.96470 0.89122 1.20725 1.02610 0.95664 0.99650 1.22898 0.78378 0.87803 0.82523 1.90569 1.58103 1.37647 1.50124 1.22128 1.00337 0.96840 1.00697 1.21629 1.00823 1.02585 0.95401 1.21009 0.90380 0.99223 0.92225 1.21009 1.03880 0.90061 0.99788 1.43713 0.99867 1.01581 1.00072 1.94438 1.70492 1.28699 1.48357 1.94688 1.43751 1.85549 1.11168 0.87239 0.86775 0.89014 0.89545 0.92627 0.98397 0.98753 0.92611 0.81976 0.77800 0.85161 0.84640 0.89435 0.93315 0.93652 0.83209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 14.32 67.78 0.97 -3.14 16 2 C -0.16 -5.08 9.09 25.65 0.23 -4.84 16 3 C 0.10 3.48 5.14 85.56 0.44 3.92 16 4 N -0.52 -21.04 2.32 -703.89 -1.63 -22.67 16 5 C 0.22 10.96 4.29 85.56 0.37 11.33 16 6 C -0.52 -28.06 8.37 25.60 0.21 -27.85 16 7 H 0.06 3.49 7.18 -2.91 -0.02 3.47 16 8 C 0.01 0.61 5.46 84.65 0.46 1.07 16 9 N -0.93 -52.94 13.29 21.44 0.28 -52.66 16 10 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 11 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 12 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 C 0.20 6.90 3.95 38.54 0.15 7.05 16 15 C -0.17 -4.17 8.49 22.13 0.19 -3.98 16 16 C 0.02 0.29 9.42 22.33 0.21 0.50 16 17 C -0.18 -3.93 5.87 -20.14 -0.12 -4.04 16 18 C 0.40 7.55 7.10 27.91 0.20 7.74 16 19 O -0.49 -13.07 15.96 -3.12 -0.05 -13.12 16 20 C -0.16 -1.39 5.02 29.85 0.15 -1.25 16 21 C -0.15 -1.61 9.20 71.98 0.66 -0.95 16 22 C -0.01 -0.26 9.05 22.33 0.20 -0.05 16 23 C -0.06 -2.23 6.83 36.24 0.25 -1.99 16 24 N 0.03 1.32 4.45 -46.79 -0.21 1.11 16 25 O -0.22 -9.11 18.42 18.88 0.35 -8.77 16 26 O -0.13 -5.86 17.09 18.88 0.32 -5.54 16 27 H 0.11 2.26 8.06 -2.91 -0.02 2.23 16 28 H 0.11 2.22 7.84 -2.91 -0.02 2.20 16 29 H 0.09 3.23 8.06 -2.91 -0.02 3.21 16 30 H 0.09 3.39 6.65 -2.39 -0.02 3.37 16 31 H 0.06 1.67 6.79 -2.39 -0.02 1.65 16 32 H 0.00 -0.08 7.44 -2.38 -0.02 -0.10 16 33 H -0.01 -0.31 8.06 -2.39 -0.02 -0.33 16 34 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 35 H 0.16 3.66 7.08 -2.91 -0.02 3.64 16 36 H 0.21 0.96 7.03 -2.91 -0.02 0.94 16 37 H 0.13 0.51 8.08 -2.38 -0.02 0.49 16 38 H 0.14 0.34 8.08 -2.39 -0.02 0.33 16 39 H 0.09 0.54 8.14 -2.39 -0.02 0.53 16 40 H 0.05 0.66 8.10 -2.39 -0.02 0.64 16 41 H 0.04 0.64 8.10 -2.39 -0.02 0.62 16 42 H 0.15 4.63 7.16 -2.91 -0.02 4.61 16 Total: -1.00 -72.66 364.15 6.70 -65.95 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 1.03 Total: 6.82 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 4.58 Total: -16.47 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -1.55 Total: -74.21 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: 0.62 Total: -27.43 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -72.66 6.70 -65.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292017076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.808 kcal (2) G-P(sol) polarization free energy of solvation -72.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds