Wall clock time and date at job start Tue Mar 31 2020 12:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.87280 * 2 1 4 4 C 1.54103 * 109.87701 * 121.16738 * 2 1 3 5 5 C 1.54987 * 104.25659 * 121.58686 * 4 2 1 6 6 C 1.55001 * 102.00780 * 20.66220 * 5 4 2 7 7 H 1.09005 * 110.61645 * 81.76088 * 6 5 4 8 8 C 1.50701 * 110.61618 * 204.59487 * 6 5 4 9 9 O 1.21281 * 119.99867 * 112.82750 * 8 6 5 10 10 N 1.34769 * 120.00277 * 292.82371 * 8 6 5 11 11 N 1.40100 * 120.00256 * 180.02562 * 10 8 6 12 12 C 1.34780 * 120.00218 * 180.27941 * 11 10 8 13 13 O 1.21549 * 119.99806 * 359.71413 * 12 11 10 14 14 C 1.47878 * 120.00262 * 179.72057 * 12 11 10 15 15 C 1.39920 * 120.02386 * 359.72601 * 14 12 11 16 16 C 1.38336 * 120.35737 * 179.71622 * 15 14 12 17 17 C 1.37749 * 120.41167 * 0.56054 * 16 15 14 18 18 C 1.40756 * 120.03975 * 359.71667 * 17 16 15 19 19 C 1.41434 * 120.17791 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99749 * 334.96772 * 19 18 17 21 21 C 1.39933 * 120.00418 * 154.96798 * 19 18 17 22 22 N 1.30833 * 119.99622 * 342.53889 * 21 19 18 23 23 Si 1.86794 * 120.00310 * 162.53175 * 21 19 18 24 24 H 1.48502 * 109.47055 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47063 * 120.00324 * 23 21 19 26 26 H 1.48499 * 109.47375 * 240.00338 * 23 21 19 27 27 C 1.39000 * 120.02750 * 179.97438 * 14 12 11 28 28 O 1.43749 * 109.87543 * 238.99369 * 2 1 3 29 29 H 1.09000 * 109.46909 * 179.55140 * 1 2 3 30 30 H 1.09006 * 109.46684 * 299.55120 * 1 2 3 31 31 H 1.08995 * 109.46635 * 59.54678 * 1 2 3 32 32 H 1.09002 * 110.48271 * 240.13005 * 4 2 1 33 33 H 1.09004 * 110.48896 * 2.63535 * 4 2 1 34 34 H 1.08998 * 110.83944 * 262.54423 * 5 4 2 35 35 H 1.08994 * 111.05176 * 138.87613 * 5 4 2 36 36 H 0.97003 * 120.00339 * 359.97438 * 10 8 6 37 37 H 0.97001 * 119.99963 * 359.97438 * 11 10 8 38 38 H 1.07996 * 119.82300 * 359.96948 * 15 14 12 39 39 H 1.08004 * 119.78991 * 180.25203 * 16 15 14 40 40 H 1.07998 * 119.98106 * 179.70033 * 17 16 15 41 41 H 0.97003 * 119.99948 * 179.97438 * 22 21 19 42 42 H 1.07994 * 120.20233 * 0.02961 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0540 -0.7500 1.2400 5 6 2.9237 -1.8922 0.6560 6 6 3.2379 -1.3632 -0.7666 7 1 4.0691 -0.6586 -0.7392 8 6 3.5427 -2.5048 -1.7020 9 8 2.7844 -2.7614 -2.6130 10 7 4.6581 -3.2406 -1.5262 11 7 4.9418 -4.3016 -2.3960 12 6 6.0543 -5.0409 -2.2168 13 8 6.8142 -4.7840 -1.3036 14 6 6.3506 -6.1647 -3.1312 15 6 5.4734 -6.4645 -4.1792 16 6 5.7467 -7.5105 -5.0423 17 6 6.8793 -8.2761 -4.8733 18 6 7.7706 -7.9932 -3.8212 19 6 8.9346 -8.7771 -3.6453 20 1 8.9627 -9.7922 -4.0133 21 6 10.0498 -8.2376 -2.9947 22 7 10.1613 -6.9417 -2.8535 23 14 11.3792 -9.3676 -2.3275 24 1 11.0186 -10.7794 -2.6142 25 1 12.6747 -9.0460 -2.9783 26 1 11.5013 -9.1758 -0.8600 27 6 7.4981 -6.9272 -2.9472 28 8 2.0188 -0.6964 -1.1587 29 1 -0.3633 -1.0276 -0.0080 30 1 -0.3633 0.5069 0.8941 31 1 -0.3632 0.5208 -0.8859 32 1 2.6620 -0.0885 1.8573 33 1 1.2245 -1.1554 1.8195 34 1 2.3597 -2.8237 0.6088 35 1 3.8389 -2.0220 1.2336 36 1 5.2649 -3.0352 -0.7978 37 1 4.3352 -4.5068 -3.1246 38 1 4.5801 -5.8735 -4.3176 39 1 5.0653 -7.7313 -5.8506 40 1 7.0834 -9.0941 -5.5483 41 1 10.9341 -6.5677 -2.4021 42 1 8.1758 -6.7023 -2.1370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294048517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:30 Heat of formation + Delta-G solvation = -68.943384 kcal Electronic energy + Delta-G solvation = -25610.888493 eV Core-core repulsion = 21749.720158 eV Total energy + Delta-G solvation = -3861.168335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.67170 -39.56542 -38.42352 -37.09600 -35.07002 -33.82980 -32.72869 -32.50537 -31.18801 -29.67524 -29.46465 -26.83674 -25.35866 -23.46249 -22.65146 -21.37745 -21.32459 -20.96601 -19.87592 -18.10225 -17.74463 -17.13843 -16.88939 -16.04614 -15.70030 -15.39265 -15.18737 -14.99579 -14.60794 -14.30473 -14.05256 -13.79256 -13.63934 -13.29773 -12.99335 -12.84570 -12.67918 -12.59955 -12.30718 -11.96194 -11.75331 -11.35264 -11.26912 -11.16595 -11.12580 -11.03748 -10.79901 -10.55693 -10.28913 -10.17991 -9.92716 -9.76996 -9.33130 -9.28367 -8.23049 -7.71053 -7.60082 -6.86919 -4.48229 1.84589 1.98525 2.39720 2.73869 3.04375 3.08325 3.10335 3.40416 3.68540 3.87152 3.93844 4.13931 4.42690 4.47621 4.54719 4.63626 4.70353 4.83860 5.00249 5.11604 5.27480 5.36056 5.47367 5.49725 5.51190 5.58852 5.67309 5.84113 6.00921 6.20686 6.44020 6.60696 6.80604 6.83032 6.91543 6.97619 7.13348 7.28124 7.58935 7.65107 7.81804 7.91730 7.99467 8.09501 8.41727 8.71020 8.73702 8.76604 10.08014 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025179 B = 0.002481 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.779517 B =11283.316235 C =12149.384386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.068 3.932 3 H 0.073 0.927 4 C -0.150 4.150 5 C -0.147 4.147 6 C 0.072 3.928 7 H 0.103 0.897 8 C 0.514 3.486 9 O -0.522 6.522 10 N -0.516 5.516 11 N -0.528 5.528 12 C 0.569 3.431 13 O -0.545 6.545 14 C -0.121 4.121 15 C -0.218 4.218 16 C -0.095 4.095 17 C -0.207 4.207 18 C 0.098 3.902 19 C -0.457 4.457 20 H 0.083 0.917 21 C 0.073 3.927 22 N -0.784 5.784 23 Si 0.911 3.089 24 H -0.259 1.259 25 H -0.274 1.274 26 H -0.270 1.270 27 C -0.087 4.087 28 O -0.342 6.342 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.430 0.570 37 H 0.432 0.568 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.285 0.715 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.596 11.637 8.525 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.011 3.989 3 H 0.091 0.909 4 C -0.188 4.188 5 C -0.185 4.185 6 C 0.010 3.990 7 H 0.120 0.880 8 C 0.299 3.701 9 O -0.396 6.396 10 N -0.264 5.264 11 N -0.280 5.280 12 C 0.361 3.639 13 O -0.422 6.422 14 C -0.125 4.125 15 C -0.238 4.238 16 C -0.113 4.113 17 C -0.227 4.227 18 C 0.096 3.904 19 C -0.486 4.486 20 H 0.101 0.899 21 C -0.147 4.147 22 N -0.408 5.408 23 Si 0.735 3.265 24 H -0.183 1.183 25 H -0.199 1.199 26 H -0.195 1.195 27 C -0.107 4.107 28 O -0.260 6.260 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.271 0.729 37 H 0.276 0.724 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.550 11.841 8.398 18.551 hybrid contribution 0.744 -0.267 0.415 0.893 sum -10.805 11.573 8.813 18.121 Atomic orbital electron populations 1.21935 0.93348 1.03130 1.02453 1.22849 0.95625 0.95784 0.84673 0.90901 1.23057 1.00340 0.97287 0.98076 1.23196 1.01626 0.99888 0.93806 1.22767 0.90886 0.92799 0.92590 0.87997 1.20304 0.80337 0.83189 0.86291 1.90753 1.47559 1.69036 1.32236 1.44598 1.25032 1.26912 1.29864 1.45197 1.27071 1.26030 1.29687 1.19136 0.78290 0.81610 0.84910 1.90711 1.47892 1.70296 1.33297 1.19156 0.98984 0.96854 0.97540 1.20392 1.00338 1.02788 1.00266 1.20457 0.96985 0.95858 0.97981 1.21145 0.98182 1.03241 1.00089 1.17594 0.92292 0.91274 0.89277 1.19627 0.96559 1.00090 1.32340 0.89886 1.25980 0.99628 0.95276 0.93780 1.69793 1.28365 1.11959 1.30679 0.86215 0.79748 0.81233 0.79323 1.18290 1.19886 1.19542 1.21611 0.93989 0.95508 0.99623 1.89043 1.37868 1.66713 1.32395 0.91686 0.91144 0.91708 0.90087 0.89742 0.89587 0.88809 0.72887 0.72439 0.89003 0.88559 0.88365 0.90435 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.36 37.16 0.35 -0.74 16 2 C 0.07 0.55 4.06 -26.15 -0.11 0.45 16 3 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.15 -0.94 6.65 -25.11 -0.17 -1.11 16 5 C -0.15 -1.16 6.59 -24.63 -0.16 -1.32 16 6 C 0.07 0.76 3.76 -26.83 -0.10 0.65 16 7 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 8 C 0.51 7.39 7.32 -10.99 -0.08 7.31 16 9 O -0.52 -9.57 16.40 -13.51 -0.22 -9.79 16 10 N -0.52 -7.56 6.26 31.22 0.20 -7.37 16 11 N -0.53 -9.33 6.21 30.54 0.19 -9.14 16 12 C 0.57 12.05 7.89 -12.31 -0.10 11.95 16 13 O -0.55 -12.64 16.17 5.32 0.09 -12.56 16 14 C -0.12 -2.77 5.87 -105.04 -0.62 -3.39 16 15 C -0.22 -4.56 9.55 -38.92 -0.37 -4.93 16 16 C -0.09 -1.99 10.01 -39.72 -0.40 -2.39 16 17 C -0.21 -4.79 9.78 -38.81 -0.38 -5.17 16 18 C 0.10 2.53 5.57 -106.87 -0.59 1.93 16 19 C -0.46 -11.67 9.05 -37.73 -0.34 -12.01 16 20 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 21 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 22 N -0.78 -20.13 10.97 55.55 0.61 -19.52 16 23 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 24 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 27 C -0.09 -2.24 8.23 -38.44 -0.32 -2.56 16 28 O -0.34 -4.18 10.47 -54.30 -0.57 -4.75 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.47 7.70 -51.93 -0.40 0.07 16 34 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.43 5.51 8.00 -182.59 -1.46 4.05 16 37 H 0.43 7.41 6.02 -182.60 -1.10 6.31 16 38 H 0.09 1.66 6.38 -52.49 -0.33 1.32 16 39 H 0.10 1.73 8.06 -52.48 -0.42 1.30 16 40 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 41 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 42 H 0.14 3.74 5.76 -52.49 -0.30 3.44 16 LS Contribution 357.43 15.07 5.39 5.39 Total: -1.00 -31.52 357.43 -10.20 -41.71 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -7.37 Total: 12.44 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -3.47 Total: -9.63 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.99 Total: -36.03 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.70 Total: -27.10 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.52 -10.20 -41.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294048517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.230 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds