Wall clock time and date at job start Tue Mar 31 2020 12:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.87280 * 2 1 4 4 C 1.54103 * 109.87701 * 121.16738 * 2 1 3 5 5 C 1.54987 * 104.25659 * 121.58686 * 4 2 1 6 6 C 1.55001 * 102.00780 * 20.66220 * 5 4 2 7 7 H 1.09005 * 110.61645 * 81.76088 * 6 5 4 8 8 C 1.50701 * 110.61618 * 204.59487 * 6 5 4 9 9 O 1.21281 * 119.99867 * 112.82750 * 8 6 5 10 10 N 1.34769 * 120.00277 * 292.82371 * 8 6 5 11 11 N 1.40100 * 120.00256 * 180.02562 * 10 8 6 12 12 C 1.34780 * 120.00218 * 180.27941 * 11 10 8 13 13 O 1.21549 * 119.99806 * 359.71413 * 12 11 10 14 14 C 1.47878 * 120.00262 * 179.72057 * 12 11 10 15 15 C 1.39920 * 120.02386 * 359.72601 * 14 12 11 16 16 C 1.38336 * 120.35737 * 179.71622 * 15 14 12 17 17 C 1.37749 * 120.41167 * 0.56054 * 16 15 14 18 18 C 1.40756 * 120.03975 * 359.71667 * 17 16 15 19 19 C 1.41434 * 120.17791 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99749 * 334.96772 * 19 18 17 21 21 C 1.39933 * 120.00418 * 154.96798 * 19 18 17 22 22 N 1.30833 * 119.99622 * 342.53889 * 21 19 18 23 23 Si 1.86794 * 120.00310 * 162.53175 * 21 19 18 24 24 H 1.48502 * 109.47055 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47063 * 120.00324 * 23 21 19 26 26 H 1.48499 * 109.47375 * 240.00338 * 23 21 19 27 27 C 1.39000 * 120.02750 * 179.97438 * 14 12 11 28 28 O 1.43749 * 109.87543 * 238.99369 * 2 1 3 29 29 H 1.09000 * 109.46909 * 179.55140 * 1 2 3 30 30 H 1.09006 * 109.46684 * 299.55120 * 1 2 3 31 31 H 1.08995 * 109.46635 * 59.54678 * 1 2 3 32 32 H 1.09002 * 110.48271 * 240.13005 * 4 2 1 33 33 H 1.09004 * 110.48896 * 2.63535 * 4 2 1 34 34 H 1.08998 * 110.83944 * 262.54423 * 5 4 2 35 35 H 1.08994 * 111.05176 * 138.87613 * 5 4 2 36 36 H 0.97003 * 120.00339 * 359.97438 * 10 8 6 37 37 H 0.97001 * 119.99963 * 359.97438 * 11 10 8 38 38 H 1.07996 * 119.82300 * 359.96948 * 15 14 12 39 39 H 1.08004 * 119.78991 * 180.25203 * 16 15 14 40 40 H 1.07998 * 119.98106 * 179.70033 * 17 16 15 41 41 H 0.97003 * 119.99948 * 179.97438 * 22 21 19 42 42 H 1.07994 * 120.20233 * 0.02961 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0540 -0.7500 1.2400 5 6 2.9237 -1.8922 0.6560 6 6 3.2379 -1.3632 -0.7666 7 1 4.0691 -0.6586 -0.7392 8 6 3.5427 -2.5048 -1.7020 9 8 2.7844 -2.7614 -2.6130 10 7 4.6581 -3.2406 -1.5262 11 7 4.9418 -4.3016 -2.3960 12 6 6.0543 -5.0409 -2.2168 13 8 6.8142 -4.7840 -1.3036 14 6 6.3506 -6.1647 -3.1312 15 6 5.4734 -6.4645 -4.1792 16 6 5.7467 -7.5105 -5.0423 17 6 6.8793 -8.2761 -4.8733 18 6 7.7706 -7.9932 -3.8212 19 6 8.9346 -8.7771 -3.6453 20 1 8.9627 -9.7922 -4.0133 21 6 10.0498 -8.2376 -2.9947 22 7 10.1613 -6.9417 -2.8535 23 14 11.3792 -9.3676 -2.3275 24 1 11.0186 -10.7794 -2.6142 25 1 12.6747 -9.0460 -2.9783 26 1 11.5013 -9.1758 -0.8600 27 6 7.4981 -6.9272 -2.9472 28 8 2.0188 -0.6964 -1.1587 29 1 -0.3633 -1.0276 -0.0080 30 1 -0.3633 0.5069 0.8941 31 1 -0.3632 0.5208 -0.8859 32 1 2.6620 -0.0885 1.8573 33 1 1.2245 -1.1554 1.8195 34 1 2.3597 -2.8237 0.6088 35 1 3.8389 -2.0220 1.2336 36 1 5.2649 -3.0352 -0.7978 37 1 4.3352 -4.5068 -3.1246 38 1 4.5801 -5.8735 -4.3176 39 1 5.0653 -7.7313 -5.8506 40 1 7.0834 -9.0941 -5.5483 41 1 10.9341 -6.5677 -2.4021 42 1 8.1758 -6.7023 -2.1370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294048517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:29 Heat of formation + Delta-G solvation = -89.190802 kcal Electronic energy + Delta-G solvation = -25611.766487 eV Core-core repulsion = 21749.720158 eV Total energy + Delta-G solvation = -3862.046329 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.80775 -40.87468 -39.66211 -38.82340 -36.52391 -35.63345 -33.66378 -33.35237 -32.46116 -31.38154 -31.04444 -27.71320 -27.14411 -24.69425 -23.81303 -22.89176 -22.46496 -21.96429 -21.37370 -19.69444 -19.10219 -18.47684 -17.78089 -17.41115 -16.93639 -16.70482 -16.51996 -16.43159 -16.11306 -15.64964 -15.57971 -15.10393 -14.59589 -14.56308 -14.45382 -14.32803 -13.64198 -13.53299 -13.25502 -13.02978 -12.95267 -12.81100 -12.64545 -12.61757 -12.49469 -12.20653 -11.98274 -11.89048 -11.63867 -11.54231 -11.37225 -11.09471 -11.03563 -10.72867 -9.77081 -9.45207 -9.39005 -8.67997 -6.39488 0.23020 0.56309 0.96682 1.21308 1.38874 1.46818 1.54683 1.96990 2.19967 2.49858 2.73970 3.03167 3.33476 3.53297 3.65082 3.84254 3.87539 3.95238 4.08181 4.18268 4.36355 4.44965 4.52089 4.55976 4.74698 4.84583 4.88233 4.95677 5.02613 5.05061 5.11452 5.15903 5.27905 5.29386 5.40803 5.45857 5.54479 5.78910 5.85432 5.92830 6.02266 6.24297 6.38471 6.56392 6.70824 6.86530 6.89892 7.20219 8.29293 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025179 B = 0.002481 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.779517 B =11283.316235 C =12149.384386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 H 0.089 0.911 4 C -0.141 4.141 5 C -0.145 4.145 6 C 0.074 3.926 7 H 0.133 0.867 8 C 0.516 3.484 9 O -0.564 6.564 10 N -0.509 5.509 11 N -0.518 5.518 12 C 0.571 3.429 13 O -0.571 6.571 14 C -0.129 4.129 15 C -0.204 4.204 16 C -0.093 4.093 17 C -0.212 4.212 18 C 0.068 3.932 19 C -0.492 4.492 20 H 0.085 0.915 21 C 0.030 3.970 22 N -0.823 5.823 23 Si 0.983 3.017 24 H -0.253 1.253 25 H -0.265 1.265 26 H -0.269 1.269 27 C -0.121 4.121 28 O -0.379 6.379 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.439 0.561 37 H 0.435 0.565 38 H 0.126 0.874 39 H 0.137 0.863 40 H 0.112 0.888 41 H 0.288 0.712 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.628 12.547 9.318 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.002 3.998 3 H 0.107 0.893 4 C -0.179 4.179 5 C -0.183 4.183 6 C 0.012 3.988 7 H 0.150 0.850 8 C 0.303 3.697 9 O -0.441 6.441 10 N -0.259 5.259 11 N -0.268 5.268 12 C 0.361 3.639 13 O -0.450 6.450 14 C -0.134 4.134 15 C -0.224 4.224 16 C -0.111 4.111 17 C -0.231 4.231 18 C 0.066 3.934 19 C -0.521 4.521 20 H 0.104 0.896 21 C -0.185 4.185 22 N -0.448 5.448 23 Si 0.804 3.196 24 H -0.176 1.176 25 H -0.190 1.190 26 H -0.193 1.193 27 C -0.142 4.142 28 O -0.298 6.298 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.283 0.717 37 H 0.280 0.720 38 H 0.144 0.856 39 H 0.155 0.845 40 H 0.130 0.870 41 H 0.099 0.901 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.616 12.768 9.187 20.164 hybrid contribution 0.834 -0.439 0.093 0.947 sum -11.783 12.329 9.280 19.415 Atomic orbital electron populations 1.21973 0.93135 1.02474 1.03288 1.23146 0.95947 0.96461 0.84284 0.89276 1.23069 1.00629 0.96762 0.97424 1.23251 1.02895 0.99749 0.92436 1.22967 0.91608 0.91769 0.92445 0.84959 1.21216 0.79081 0.83316 0.86081 1.90728 1.48817 1.70286 1.34228 1.44794 1.25610 1.25910 1.29542 1.44864 1.25771 1.26264 1.29896 1.18801 0.78940 0.81703 0.84410 1.90690 1.49015 1.71029 1.34274 1.19392 0.98515 0.97033 0.98410 1.20813 1.00494 1.02415 0.98647 1.20901 0.96688 0.94860 0.98679 1.21435 0.98403 1.03806 0.99499 1.17946 0.93320 0.91854 0.90287 1.19889 0.97473 1.00458 1.34325 0.89648 1.26846 1.01677 0.96544 0.93428 1.69876 1.29379 1.13725 1.31830 0.85138 0.76840 0.79233 0.78420 1.17578 1.18997 1.19348 1.21428 0.95295 0.97460 0.99987 1.89013 1.38636 1.67318 1.34838 0.93024 0.88542 0.92693 0.87512 0.88908 0.91178 0.86413 0.71741 0.72004 0.85629 0.84488 0.87026 0.90110 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.36 71.98 0.67 -1.27 16 2 C 0.06 0.82 4.06 30.97 0.13 0.94 16 3 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.14 -1.32 6.65 31.65 0.21 -1.11 16 5 C -0.15 -1.93 6.59 31.96 0.21 -1.72 16 6 C 0.07 1.41 3.76 30.53 0.11 1.52 16 7 H 0.13 1.72 8.14 -2.38 -0.02 1.70 16 8 C 0.52 14.29 7.32 87.66 0.64 14.93 16 9 O -0.56 -20.46 16.40 15.20 0.25 -20.21 16 10 N -0.51 -14.38 6.26 -173.54 -1.09 -15.47 16 11 N -0.52 -17.91 6.21 -175.58 -1.09 -19.00 16 12 C 0.57 24.29 7.89 86.80 0.68 24.97 16 13 O -0.57 -27.01 16.17 -3.87 -0.06 -27.07 16 14 C -0.13 -5.98 5.87 -20.13 -0.12 -6.10 16 15 C -0.20 -8.20 9.55 22.70 0.22 -7.98 16 16 C -0.09 -3.73 10.01 22.18 0.22 -3.51 16 17 C -0.21 -9.73 9.78 22.77 0.22 -9.50 16 18 C 0.07 3.62 5.57 -21.32 -0.12 3.50 16 19 C -0.49 -26.01 9.05 23.47 0.21 -25.79 16 20 H 0.09 4.27 7.90 -2.91 -0.02 4.24 16 21 C 0.03 1.53 5.14 85.25 0.44 1.97 16 22 N -0.82 -44.15 10.97 21.82 0.24 -43.91 16 23 Si 0.98 38.26 29.59 68.60 2.03 40.29 16 24 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 25 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 26 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 27 C -0.12 -6.49 8.23 23.01 0.19 -6.30 16 28 O -0.38 -8.79 10.47 -130.75 -1.37 -10.16 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 0.70 8.14 -2.38 -0.02 0.69 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.09 0.74 7.70 -2.39 -0.02 0.72 16 34 H 0.07 1.16 8.05 -2.39 -0.02 1.14 16 35 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.44 10.70 8.00 -213.32 -1.71 9.00 16 37 H 0.44 14.39 6.02 -213.32 -1.28 13.11 16 38 H 0.13 4.17 6.38 -2.91 -0.02 4.15 16 39 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 40 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 41 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 42 H 0.11 6.28 5.76 -2.91 -0.02 6.27 16 Total: -1.00 -71.99 357.43 0.92 -71.07 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -1.92 Total: 39.90 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 3.93 Total: -15.45 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -1.94 Total: -78.38 kcal Atomic # 8 Polarization: -56.26 SS G_CDS: -1.18 Total: -57.44 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -71.99 0.92 -71.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294048517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.121 kcal (2) G-P(sol) polarization free energy of solvation -71.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds