Wall clock time and date at job start Tue Mar 31 2020 12:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47044 * 327.60747 * 3 2 1 5 5 C 1.42905 * 113.99778 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46882 * 30.00382 * 5 4 3 7 7 C 1.52998 * 109.47307 * 269.99994 * 5 4 3 8 8 C 1.50701 * 109.46777 * 150.00026 * 5 4 3 9 9 O 1.21281 * 120.00439 * 5.00672 * 8 5 4 10 10 N 1.34775 * 119.99947 * 184.99711 * 8 5 4 11 11 C 1.39580 * 120.00281 * 180.02562 * 10 8 5 12 12 N 1.32277 * 119.72287 * 0.02562 * 11 10 8 13 13 C 1.31952 * 121.68496 * 179.97438 * 12 11 10 14 14 C 1.38089 * 120.96137 * 0.02562 * 13 12 11 15 15 C 1.38777 * 119.35183 * 0.02562 * 14 13 12 16 16 C 1.38806 * 118.44332 * 359.74946 * 15 14 13 17 17 O 1.35981 * 120.49211 * 180.24420 * 16 15 14 18 18 C 1.42900 * 117.00408 * 0.25527 * 17 16 15 19 19 C 1.52994 * 109.47278 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.47138 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00102 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99991 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99941 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99968 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47180 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47479 * 119.99660 * 24 22 20 27 27 H 1.48503 * 109.47242 * 240.00069 * 24 22 20 28 28 H 4.38443 * 5.44458 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47005 * 207.60807 * 3 2 1 30 30 H 1.08997 * 109.46973 * 87.61000 * 3 2 1 31 31 H 1.09002 * 109.47171 * 179.97438 * 7 5 4 32 32 H 1.09004 * 109.47223 * 300.00490 * 7 5 4 33 33 H 1.08997 * 109.46785 * 60.00007 * 7 5 4 34 34 H 0.97004 * 120.00156 * 0.02562 * 10 8 5 35 35 H 1.08009 * 119.52089 * 179.97438 * 13 12 11 36 36 H 1.07989 * 120.32330 * 180.02562 * 14 13 12 37 37 H 1.07996 * 120.77755 * 180.02562 * 15 14 13 38 38 H 1.09008 * 109.46570 * 300.00057 * 18 17 16 39 39 H 1.08995 * 109.46993 * 59.99289 * 18 17 16 40 40 H 1.09008 * 109.46773 * 299.99114 * 19 18 17 41 41 H 1.08998 * 109.47520 * 59.99219 * 19 18 17 42 42 H 0.96997 * 120.00076 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -1.1368 0.7218 5 6 4.5474 -1.2317 0.7817 6 1 4.9796 -0.2314 0.7554 7 6 5.0557 -2.0385 -0.4148 8 6 4.9516 -1.9201 2.0599 9 8 4.1035 -2.3735 2.7989 10 7 6.2556 -2.0321 2.3818 11 6 6.6300 -2.6702 3.5654 12 7 5.7005 -3.1634 4.3670 13 6 6.0108 -3.7743 5.4946 14 6 7.3276 -3.9222 5.8834 15 6 8.3365 -3.4193 5.0740 16 6 7.9811 -2.7857 3.8912 17 8 8.9359 -2.2819 3.0644 18 6 10.2965 -2.4432 3.4703 19 6 11.2190 -1.8175 2.4224 20 6 12.6539 -1.9871 2.8508 21 1 12.8847 -2.4905 3.7780 22 6 13.6720 -1.4997 2.0590 23 7 13.3909 -0.8872 0.9297 24 14 15.4505 -1.7093 2.5904 25 1 15.4976 -2.4265 3.8899 26 1 16.1844 -2.4933 1.5649 27 1 16.0833 -0.3741 2.7393 28 1 -1.0498 -0.0004 0.0000 29 1 3.0089 0.9115 0.4762 30 1 3.0093 -0.0420 -1.0267 31 1 6.1423 -2.1105 -0.3693 32 1 4.6234 -3.0388 -0.3885 33 1 4.7633 -1.5406 -1.3393 34 1 6.9339 -1.6693 1.7908 35 1 5.2234 -4.1635 6.1232 36 1 7.5699 -4.4243 6.8083 37 1 9.3740 -3.5226 5.3555 38 1 10.4502 -1.9499 4.4302 39 1 10.5233 -3.5049 3.5672 40 1 11.0655 -2.3106 1.4624 41 1 10.9920 -0.7558 2.3260 42 1 14.1071 -0.5439 0.3728 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294644022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:27 Heat of formation + Delta-G solvation = -16.573427 kcal Electronic energy + Delta-G solvation = -25405.744406 eV Core-core repulsion = 21546.847003 eV Total energy + Delta-G solvation = -3858.897403 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.95549 -39.67151 -38.12358 -37.64041 -34.84047 -33.74170 -33.50170 -31.97360 -31.42030 -30.44501 -28.99441 -27.40649 -25.48480 -24.89541 -23.26684 -22.69258 -21.07580 -20.27318 -18.98395 -18.49948 -17.66158 -17.28021 -16.78982 -16.20821 -15.98996 -15.96810 -15.71272 -15.05808 -14.86842 -14.75364 -14.58208 -14.00767 -13.86270 -13.65725 -13.19168 -12.88001 -12.74215 -12.47779 -12.43452 -12.04678 -11.95114 -11.70031 -11.07702 -11.03441 -10.97202 -10.85519 -10.71358 -10.69884 -10.21113 -10.07819 -9.88780 -9.77700 -9.41741 -9.23938 -8.99224 -8.55140 -7.69116 -6.20757 -4.25483 1.18540 1.43262 2.05803 2.51904 2.64604 2.78838 3.19928 3.27265 3.30139 3.50202 3.66823 3.98664 4.16321 4.31673 4.36237 4.58535 4.70685 4.76288 4.86682 4.93694 5.06254 5.07971 5.16407 5.24803 5.34690 5.42916 5.45199 5.60483 5.83688 5.86558 5.87552 6.03802 6.16409 6.31690 6.51191 6.56543 6.71916 7.21659 7.27841 7.31870 7.49612 7.61561 7.82496 8.04228 8.11773 8.32275 8.79937 9.39653 10.90693 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013668 B = 0.002685 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.150533 B =10425.371803 C =12277.993114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.191 4.191 3 C 0.169 3.831 4 O -0.351 6.351 5 C 0.074 3.926 6 H 0.094 0.906 7 C -0.174 4.174 8 C 0.504 3.496 9 O -0.457 6.457 10 N -0.649 5.649 11 C 0.329 3.671 12 N -0.444 5.444 13 C 0.076 3.924 14 C -0.159 4.159 15 C -0.148 4.148 16 C 0.068 3.932 17 O -0.316 6.316 18 C 0.066 3.934 19 C 0.026 3.974 20 C -0.528 4.528 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.222 0.778 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.424 0.576 35 H 0.157 0.843 36 H 0.135 0.865 37 H 0.145 0.855 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.775 -0.283 0.318 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.191 4.191 3 C 0.094 3.906 4 O -0.269 6.269 5 C 0.013 3.987 6 H 0.112 0.888 7 C -0.232 4.232 8 C 0.288 3.712 9 O -0.324 6.324 10 N -0.299 5.299 11 C 0.097 3.903 12 N -0.159 5.159 13 C -0.081 4.081 14 C -0.180 4.180 15 C -0.174 4.174 16 C 0.017 3.983 17 O -0.229 6.229 18 C -0.008 4.008 19 C -0.011 4.011 20 C -0.566 4.566 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.239 0.761 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.262 0.738 35 H 0.174 0.826 36 H 0.153 0.847 37 H 0.163 0.837 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.380 -0.433 0.293 19.387 hybrid contribution 2.442 0.110 0.251 2.457 sum -16.938 -0.323 0.544 16.950 Atomic orbital electron populations 1.24959 0.95884 0.98331 0.99840 1.22425 0.93792 1.01796 1.01095 1.19199 0.85049 0.89432 0.96947 1.88109 1.18840 1.44904 1.75082 1.21886 0.82962 1.00322 0.93534 0.88814 1.22283 1.02339 1.01684 0.96868 1.20453 0.82221 0.81122 0.87413 1.90820 1.49105 1.42816 1.49674 1.43352 1.08662 1.56887 1.21027 1.17757 0.86003 0.97438 0.89145 1.67623 1.33913 1.10001 1.04396 1.22421 0.95342 0.97433 0.92895 1.21901 0.93330 1.01779 1.01017 1.21615 1.01384 1.00377 0.94049 1.19573 0.88654 0.97861 0.92242 1.86092 1.16975 1.74111 1.45690 1.23400 0.75972 1.00514 1.00917 1.19130 0.91765 0.96844 0.93329 1.20986 0.90138 1.38370 1.07098 0.92275 1.24982 0.99526 0.94825 0.94809 1.69966 1.32778 1.37645 1.12272 0.86430 0.84249 0.77985 0.78726 1.19621 1.20799 1.20805 0.76135 0.90469 0.90394 0.90192 0.90850 0.90828 0.73814 0.82579 0.84743 0.83690 0.92927 0.92913 0.95333 0.95346 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 19.25 29.55 0.57 -0.99 16 2 C -0.19 -2.03 13.73 -37.12 -0.51 -2.54 16 3 C 0.17 1.56 6.22 34.37 0.21 1.77 16 4 O -0.35 -4.43 9.48 -55.09 -0.52 -4.95 16 5 C 0.07 0.80 3.13 -27.88 -0.09 0.71 16 6 H 0.09 0.72 7.79 -51.93 -0.40 0.32 16 7 C -0.17 -1.53 9.48 37.16 0.35 -1.17 16 8 C 0.50 7.42 7.14 -10.99 -0.08 7.34 16 9 O -0.46 -8.64 14.76 -14.30 -0.21 -8.85 16 10 N -0.65 -9.29 5.35 -11.29 -0.06 -9.35 16 11 C 0.33 5.42 7.45 -154.44 -1.15 4.27 16 12 N -0.44 -7.53 7.88 -12.22 -0.10 -7.63 16 13 C 0.08 1.04 11.17 -17.55 -0.20 0.84 16 14 C -0.16 -1.97 10.10 -39.44 -0.40 -2.37 16 15 C -0.15 -2.11 9.14 -39.17 -0.36 -2.47 16 16 C 0.07 1.11 6.72 -38.92 -0.26 0.85 16 17 O -0.32 -5.63 9.38 -19.68 -0.18 -5.81 16 18 C 0.07 1.26 4.70 37.15 0.17 1.44 16 19 C 0.03 0.64 5.34 -27.89 -0.15 0.49 16 20 C -0.53 -13.87 9.11 -34.44 -0.31 -14.18 16 21 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -25.14 13.29 55.43 0.74 -24.41 16 24 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H 0.22 1.13 7.80 -54.10 -0.42 0.70 16 29 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 31 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 34 H 0.42 5.17 7.83 -40.82 -0.32 4.85 16 35 H 0.16 1.69 8.06 -52.48 -0.42 1.26 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.15 1.92 6.44 -52.49 -0.34 1.58 16 38 H 0.05 0.96 7.69 -51.92 -0.40 0.56 16 39 H 0.05 0.97 7.71 -51.93 -0.40 0.57 16 40 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 LS Contribution 372.74 15.07 5.62 5.62 Total: -1.00 -34.50 372.74 -7.62 -42.11 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.59 Total: 2.34 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -2.29 Total: -4.47 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.58 Total: -41.39 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.92 Total: -19.62 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.50 -7.62 -42.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294644022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.541 kcal (2) G-P(sol) polarization free energy of solvation -34.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds