Wall clock time and date at job start Tue Mar 31 2020 12:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47044 * 327.60747 * 3 2 1 5 5 C 1.42905 * 113.99778 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46882 * 30.00382 * 5 4 3 7 7 C 1.52998 * 109.47307 * 269.99994 * 5 4 3 8 8 C 1.50701 * 109.46777 * 150.00026 * 5 4 3 9 9 O 1.21281 * 120.00439 * 5.00672 * 8 5 4 10 10 N 1.34775 * 119.99947 * 184.99711 * 8 5 4 11 11 C 1.39580 * 120.00281 * 180.02562 * 10 8 5 12 12 N 1.32277 * 119.72287 * 0.02562 * 11 10 8 13 13 C 1.31952 * 121.68496 * 179.97438 * 12 11 10 14 14 C 1.38089 * 120.96137 * 0.02562 * 13 12 11 15 15 C 1.38777 * 119.35183 * 0.02562 * 14 13 12 16 16 C 1.38806 * 118.44332 * 359.74946 * 15 14 13 17 17 O 1.35981 * 120.49211 * 180.24420 * 16 15 14 18 18 C 1.42900 * 117.00408 * 0.25527 * 17 16 15 19 19 C 1.52994 * 109.47278 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.47138 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00102 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99991 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99941 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99968 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47180 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47479 * 119.99660 * 24 22 20 27 27 H 1.48503 * 109.47242 * 240.00069 * 24 22 20 28 28 H 4.38443 * 5.44458 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47005 * 207.60807 * 3 2 1 30 30 H 1.08997 * 109.46973 * 87.61000 * 3 2 1 31 31 H 1.09002 * 109.47171 * 179.97438 * 7 5 4 32 32 H 1.09004 * 109.47223 * 300.00490 * 7 5 4 33 33 H 1.08997 * 109.46785 * 60.00007 * 7 5 4 34 34 H 0.97004 * 120.00156 * 0.02562 * 10 8 5 35 35 H 1.08009 * 119.52089 * 179.97438 * 13 12 11 36 36 H 1.07989 * 120.32330 * 180.02562 * 14 13 12 37 37 H 1.07996 * 120.77755 * 180.02562 * 15 14 13 38 38 H 1.09008 * 109.46570 * 300.00057 * 18 17 16 39 39 H 1.08995 * 109.46993 * 59.99289 * 18 17 16 40 40 H 1.09008 * 109.46773 * 299.99114 * 19 18 17 41 41 H 1.08998 * 109.47520 * 59.99219 * 19 18 17 42 42 H 0.96997 * 120.00076 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -1.1368 0.7218 5 6 4.5474 -1.2317 0.7817 6 1 4.9796 -0.2314 0.7554 7 6 5.0557 -2.0385 -0.4148 8 6 4.9516 -1.9201 2.0599 9 8 4.1035 -2.3735 2.7989 10 7 6.2556 -2.0321 2.3818 11 6 6.6300 -2.6702 3.5654 12 7 5.7005 -3.1634 4.3670 13 6 6.0108 -3.7743 5.4946 14 6 7.3276 -3.9222 5.8834 15 6 8.3365 -3.4193 5.0740 16 6 7.9811 -2.7857 3.8912 17 8 8.9359 -2.2819 3.0644 18 6 10.2965 -2.4432 3.4703 19 6 11.2190 -1.8175 2.4224 20 6 12.6539 -1.9871 2.8508 21 1 12.8847 -2.4905 3.7780 22 6 13.6720 -1.4997 2.0590 23 7 13.3909 -0.8872 0.9297 24 14 15.4505 -1.7093 2.5904 25 1 15.4976 -2.4265 3.8899 26 1 16.1844 -2.4933 1.5649 27 1 16.0833 -0.3741 2.7393 28 1 -1.0498 -0.0004 0.0000 29 1 3.0089 0.9115 0.4762 30 1 3.0093 -0.0420 -1.0267 31 1 6.1423 -2.1105 -0.3693 32 1 4.6234 -3.0388 -0.3885 33 1 4.7633 -1.5406 -1.3393 34 1 6.9339 -1.6693 1.7908 35 1 5.2234 -4.1635 6.1232 36 1 7.5699 -4.4243 6.8083 37 1 9.3740 -3.5226 5.3555 38 1 10.4502 -1.9499 4.4302 39 1 10.5233 -3.5049 3.5672 40 1 11.0655 -2.3106 1.4624 41 1 10.9920 -0.7558 2.3260 42 1 14.1071 -0.5439 0.3728 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294644022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:26 Heat of formation + Delta-G solvation = -37.978149 kcal Electronic energy + Delta-G solvation = -25406.672584 eV Core-core repulsion = 21546.847003 eV Total energy + Delta-G solvation = -3859.825582 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.10793 -40.76054 -39.26870 -38.73450 -36.03071 -35.43445 -34.46729 -33.00107 -32.66522 -31.92104 -30.20861 -28.10319 -27.16056 -25.95642 -24.59535 -23.78940 -22.66880 -21.39090 -19.85630 -19.56489 -18.99646 -18.25710 -18.06785 -17.65445 -17.18290 -17.11745 -16.73102 -16.48471 -16.08094 -15.95079 -15.71144 -15.19314 -14.91246 -14.71619 -14.34478 -14.14759 -14.01464 -13.67530 -13.52339 -13.30943 -13.20551 -12.77938 -12.77265 -12.50540 -12.42963 -11.90682 -11.74231 -11.70320 -11.61425 -11.58650 -11.39020 -11.21419 -10.65599 -10.60073 -10.41983 -10.12703 -8.88034 -8.24579 -6.36372 0.06860 0.28289 1.24779 1.42993 1.43907 1.55286 1.56181 1.80788 1.84640 2.10940 2.45095 2.85953 2.91261 3.10972 3.27767 3.60145 3.64279 3.84854 3.85715 3.96150 4.04541 4.13970 4.24588 4.31656 4.35098 4.44780 4.46094 4.65533 4.74645 4.76789 4.95615 5.00311 5.12424 5.16643 5.23216 5.32839 5.52436 5.53261 5.74534 5.91561 6.09866 6.18371 6.33725 6.58530 6.78680 6.90907 7.22788 7.33480 8.88075 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013668 B = 0.002685 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.150533 B =10425.371803 C =12277.993114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.239 4.239 3 C 0.162 3.838 4 O -0.383 6.383 5 C 0.080 3.920 6 H 0.127 0.873 7 C -0.169 4.169 8 C 0.501 3.499 9 O -0.507 6.507 10 N -0.645 5.645 11 C 0.310 3.690 12 N -0.477 5.477 13 C 0.072 3.928 14 C -0.143 4.143 15 C -0.149 4.149 16 C 0.046 3.954 17 O -0.326 6.326 18 C 0.083 3.917 19 C 0.030 3.970 20 C -0.543 4.543 21 H 0.070 0.930 22 C 0.004 3.996 23 N -0.928 5.928 24 Si 0.969 3.031 25 H -0.259 1.259 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.253 0.747 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.431 0.569 35 H 0.184 0.816 36 H 0.176 0.824 37 H 0.159 0.841 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.003 0.997 41 H 0.003 0.997 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.370 -0.701 1.449 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.239 4.239 3 C 0.088 3.912 4 O -0.303 6.303 5 C 0.019 3.981 6 H 0.144 0.856 7 C -0.226 4.226 8 C 0.287 3.713 9 O -0.378 6.378 10 N -0.295 5.295 11 C 0.078 3.922 12 N -0.193 5.193 13 C -0.085 4.085 14 C -0.163 4.163 15 C -0.175 4.175 16 C -0.005 4.005 17 O -0.240 6.240 18 C 0.009 3.991 19 C -0.007 4.007 20 C -0.581 4.581 21 H 0.088 0.912 22 C -0.195 4.195 23 N -0.567 5.567 24 Si 0.793 3.207 25 H -0.182 1.182 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.269 0.731 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.270 0.730 35 H 0.201 0.799 36 H 0.193 0.807 37 H 0.176 0.824 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.968 -0.845 1.415 19.039 hybrid contribution 2.177 0.209 -0.036 2.187 sum -16.791 -0.636 1.378 16.860 Atomic orbital electron populations 1.25867 0.96904 0.96828 0.98494 1.23114 0.95024 1.03248 1.02480 1.19485 0.84672 0.88927 0.98152 1.88060 1.19686 1.46541 1.75966 1.21970 0.82704 1.01692 0.91763 0.85589 1.22276 1.02580 1.00704 0.97072 1.21265 0.81667 0.80231 0.88146 1.90777 1.50251 1.45188 1.51588 1.43419 1.08957 1.56428 1.20722 1.17978 0.86169 0.98152 0.89909 1.67674 1.34705 1.11149 1.05753 1.23039 0.97012 0.96280 0.92168 1.22281 0.92069 1.00268 1.01725 1.21921 1.02631 0.99568 0.93384 1.19695 0.88100 0.99476 0.93215 1.86021 1.16482 1.74984 1.46468 1.22968 0.76200 1.00647 0.99319 1.18948 0.92628 0.95406 0.93765 1.21433 0.91252 1.37992 1.07418 0.91177 1.25933 1.04214 0.94513 0.94818 1.70092 1.34235 1.38807 1.13556 0.85339 0.78606 0.77997 0.78749 1.18227 1.20535 1.20533 0.73082 0.88997 0.87882 0.89454 0.92598 0.88266 0.72987 0.79894 0.80650 0.82381 0.91792 0.91801 0.97822 0.97828 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 19.25 74.32 1.43 -1.39 16 2 C -0.24 -5.00 13.73 31.13 0.43 -4.57 16 3 C 0.16 2.89 6.22 70.18 0.44 3.33 16 4 O -0.38 -9.72 9.48 -129.99 -1.23 -10.95 16 5 C 0.08 1.68 3.13 29.85 0.09 1.78 16 6 H 0.13 1.79 7.79 -2.39 -0.02 1.77 16 7 C -0.17 -2.86 9.48 71.98 0.68 -2.18 16 8 C 0.50 15.15 7.14 87.66 0.63 15.78 16 9 O -0.51 -19.96 14.76 15.95 0.24 -19.73 16 10 N -0.64 -18.93 5.35 -308.03 -1.65 -20.58 16 11 C 0.31 10.30 7.45 132.98 0.99 11.29 16 12 N -0.48 -16.18 7.88 -192.58 -1.52 -17.70 16 13 C 0.07 1.84 11.17 84.64 0.95 2.79 16 14 C -0.14 -3.12 10.10 22.36 0.23 -2.89 16 15 C -0.15 -3.96 9.14 22.53 0.21 -3.75 16 16 C 0.05 1.48 6.72 22.70 0.15 1.63 16 17 O -0.33 -11.67 9.38 -93.34 -0.88 -12.54 16 18 C 0.08 3.14 4.70 71.98 0.34 3.48 16 19 C 0.03 1.46 5.34 29.85 0.16 1.62 16 20 C -0.54 -28.44 9.11 25.60 0.23 -28.21 16 21 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 22 C 0.00 0.22 5.46 84.66 0.46 0.68 16 23 N -0.93 -53.26 13.29 21.45 0.28 -52.97 16 24 Si 0.97 41.42 29.54 68.60 2.03 43.45 16 25 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 26 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 27 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 28 H 0.25 2.10 7.80 -4.43 -0.03 2.06 16 29 H 0.09 1.28 8.09 -2.39 -0.02 1.27 16 30 H 0.10 1.22 7.87 -2.39 -0.02 1.21 16 31 H 0.09 1.34 7.93 -2.39 -0.02 1.32 16 32 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.10 1.17 7.87 -2.39 -0.02 1.15 16 34 H 0.43 10.82 7.83 -92.71 -0.73 10.09 16 35 H 0.18 3.52 8.06 -2.91 -0.02 3.50 16 36 H 0.18 2.37 8.06 -2.92 -0.02 2.34 16 37 H 0.16 3.75 6.44 -2.91 -0.02 3.73 16 38 H 0.06 2.26 7.69 -2.38 -0.02 2.24 16 39 H 0.06 2.26 7.71 -2.39 -0.02 2.24 16 40 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 41 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -77.14 372.74 4.99 -72.15 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.31 Total: 19.49 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 7.41 Total: -0.62 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -2.88 Total: -91.25 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -1.87 Total: -43.22 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -77.14 4.99 -72.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294644022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.170 kcal (2) G-P(sol) polarization free energy of solvation -77.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds