Wall clock time and date at job start Tue Mar 31 2020 13:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46511 * 109.46857 * 2 1 4 4 C 1.34779 * 119.99702 * 269.72140 * 3 2 1 5 5 O 1.21358 * 119.99914 * 4.19214 * 4 3 2 6 6 C 1.49354 * 119.99698 * 184.18934 * 4 3 2 7 7 O 1.21374 * 120.00063 * 4.82660 * 6 4 3 8 8 N 1.34776 * 119.99797 * 184.82549 * 6 4 3 9 9 C 1.39722 * 120.00091 * 174.81303 * 8 6 4 10 10 C 1.39025 * 120.03928 * 332.92049 * 9 8 6 11 11 C 1.38136 * 120.05844 * 179.72159 * 10 9 8 12 12 C 1.38180 * 120.14746 * 0.54684 * 11 10 9 13 13 C 1.38922 * 120.07963 * 359.72385 * 12 11 10 14 14 O 1.35752 * 120.03010 * 179.97438 * 13 12 11 15 15 C 1.34830 * 116.99824 * 185.79886 * 14 13 12 16 16 H 1.08001 * 120.00136 * 5.44091 * 15 14 13 17 17 C 1.38657 * 119.99959 * 185.43613 * 15 14 13 18 18 N 1.31552 * 119.99755 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00085 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46934 * 60.00156 * 19 17 15 21 21 H 1.48499 * 109.46959 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46971 * 300.00233 * 19 17 15 23 23 C 1.38755 * 119.93744 * 0.02562 * 13 12 11 24 24 C 1.46494 * 119.99990 * 89.99889 * 3 2 1 25 25 C 1.53003 * 117.50309 * 0.64982 * 24 3 2 26 26 C 1.53000 * 117.49881 * 291.99116 * 24 3 2 27 27 H 1.09003 * 109.46897 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47595 * 300.00412 * 1 2 3 29 29 H 1.09004 * 109.47415 * 60.00153 * 1 2 3 30 30 H 1.08994 * 109.47367 * 240.00292 * 2 1 3 31 31 H 1.08998 * 109.46995 * 119.99686 * 2 1 3 32 32 H 0.96998 * 119.99590 * 354.80978 * 8 6 4 33 33 H 1.08002 * 119.96793 * 359.96850 * 10 9 8 34 34 H 1.08004 * 119.93080 * 180.25099 * 11 10 9 35 35 H 1.08003 * 119.96376 * 179.70365 * 12 11 10 36 36 H 0.97002 * 119.99884 * 179.97438 * 18 17 15 37 37 H 1.08009 * 120.07372 * 180.02562 * 23 13 12 38 38 H 1.09003 * 115.54934 * 146.31854 * 24 3 2 39 39 H 1.09009 * 117.49530 * 0.02562 * 25 24 3 40 40 H 1.08998 * 117.50338 * 145.01631 * 25 24 3 41 41 H 1.09006 * 117.49782 * 214.97733 * 26 24 3 42 42 H 1.09001 * 117.50410 * 359.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2482 2.0148 -1.1672 5 8 1.9791 1.4688 -2.2171 6 6 2.8341 3.3886 -1.1685 7 8 3.1843 3.9000 -0.1250 8 7 2.9739 4.0605 -2.3285 9 6 3.4201 5.3845 -2.3195 10 6 3.1936 6.1877 -1.2076 11 6 3.6396 7.4951 -1.1961 12 6 4.3019 8.0121 -2.2931 13 6 4.5265 7.2164 -3.4095 14 8 5.1768 7.7255 -4.4869 15 6 5.2563 6.9413 -5.5808 16 1 4.7392 5.9934 -5.6044 17 6 6.0017 7.3518 -6.6755 18 7 6.6319 8.5062 -6.6466 19 14 6.1112 6.2656 -8.1913 20 1 4.7503 6.0495 -8.7447 21 1 6.9615 6.9267 -9.2136 22 1 6.7084 4.9574 -7.8207 23 6 4.0845 5.9012 -3.4228 24 6 2.2624 2.0719 1.2687 25 6 2.0029 1.2919 2.5591 26 6 1.0470 2.4094 2.1345 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.7648 3.6248 -3.1695 33 1 2.6720 5.7880 -0.3506 34 1 3.4661 8.1160 -0.3296 35 1 4.6451 9.0361 -2.2828 36 1 7.1537 8.7932 -7.4123 37 1 4.2583 5.2805 -4.2895 38 1 3.0911 2.7800 1.2666 39 1 1.6510 0.2645 2.4640 40 1 2.6607 1.4869 3.4061 41 1 1.0762 3.3394 2.7025 42 1 0.0656 2.1180 1.7601 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298928315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:38 Heat of formation + Delta-G solvation = -16.404911 kcal Electronic energy + Delta-G solvation = -26154.821269 eV Core-core repulsion = 22295.931173 eV Total energy + Delta-G solvation = -3858.890096 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.21074 -39.60197 -38.51557 -37.88245 -36.50789 -34.51891 -34.01204 -32.26769 -31.14320 -29.55714 -28.72060 -25.77030 -25.20758 -23.68082 -22.79412 -22.27624 -21.93388 -20.90059 -19.88084 -18.35586 -18.02638 -17.29298 -17.03343 -16.11958 -15.91645 -15.68421 -15.24948 -15.04121 -14.48363 -14.35829 -14.10666 -13.94503 -13.81548 -13.62873 -13.59944 -13.03590 -12.99019 -12.40369 -12.20690 -12.09342 -11.85198 -11.66194 -11.47839 -11.30282 -11.15497 -11.05842 -10.97631 -10.87264 -10.77778 -10.48433 -9.95226 -9.58146 -9.21572 -8.90882 -8.82780 -7.80521 -7.22097 -6.47262 -4.07259 1.13222 2.04155 2.17536 2.36005 3.09659 3.12833 3.14957 3.16201 3.26424 3.55877 3.94966 4.16450 4.45644 4.54283 4.59695 4.64045 4.75968 4.91061 5.01519 5.07351 5.22923 5.23203 5.42322 5.44482 5.53629 5.60681 5.71549 5.79881 5.88461 5.94141 6.01055 6.05502 6.15828 6.19254 6.52202 6.73593 6.87364 6.89167 7.05992 7.23720 7.35632 7.39672 7.64101 7.71854 7.95544 8.00196 8.97999 9.66655 10.70434 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019098 B = 0.002993 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.787873 B = 9353.054914 C =10563.484185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.103 3.897 3 N -0.559 5.559 4 C 0.514 3.486 5 O -0.516 6.516 6 C 0.507 3.493 7 O -0.494 6.494 8 N -0.632 5.632 9 C 0.174 3.826 10 C -0.211 4.211 11 C -0.062 4.062 12 C -0.198 4.198 13 C 0.169 3.831 14 O -0.173 6.173 15 C -0.394 4.394 16 H 0.090 0.910 17 C 0.041 3.959 18 N -0.861 5.861 19 Si 0.940 3.060 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.254 4.254 24 C 0.055 3.945 25 C -0.189 4.189 26 C -0.189 4.189 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.419 0.581 33 H 0.128 0.872 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.271 0.729 37 H 0.132 0.868 38 H 0.173 0.827 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.503 -14.812 15.166 23.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.291 5.291 4 C 0.297 3.703 5 O -0.391 6.391 6 C 0.289 3.711 7 O -0.369 6.369 8 N -0.277 5.277 9 C 0.081 3.919 10 C -0.231 4.231 11 C -0.081 4.081 12 C -0.217 4.217 13 C 0.115 3.885 14 O -0.077 6.077 15 C -0.470 4.470 16 H 0.108 0.892 17 C -0.164 4.164 18 N -0.496 5.496 19 Si 0.764 3.236 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.195 1.195 23 C -0.275 4.275 24 C -0.049 4.049 25 C -0.227 4.227 26 C -0.228 4.228 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.256 0.744 33 H 0.146 0.854 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.081 0.919 37 H 0.150 0.850 38 H 0.189 0.811 39 H 0.117 0.883 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.155 -14.439 15.113 23.239 hybrid contribution -0.123 -0.943 -1.154 1.495 sum -10.278 -15.382 13.959 23.175 Atomic orbital electron populations 1.22236 0.95376 1.02563 1.02798 1.21641 0.94885 0.81482 1.03850 1.47290 1.63126 1.13692 1.04977 1.20084 0.79415 0.86861 0.83930 1.90775 1.50652 1.67115 1.30586 1.19988 0.80173 0.86449 0.84519 1.90565 1.47729 1.68048 1.30594 1.43169 1.62762 1.12235 1.09492 1.17447 0.96793 0.81595 0.96050 1.20696 1.08981 0.94261 0.99192 1.20538 0.96395 0.94401 0.96743 1.20296 1.07762 1.00274 0.93405 1.19057 0.90724 0.90498 0.88270 1.84023 1.63869 1.41187 1.18572 1.21243 1.32276 1.03080 0.90415 0.89212 1.25279 0.95414 0.96881 0.98786 1.70023 1.29244 1.19167 1.31147 0.85799 0.78789 0.79235 0.79745 1.19441 1.20243 1.19480 1.20793 1.08891 0.97517 1.00310 1.22979 1.02132 1.00013 0.79759 1.23381 1.03833 0.97431 0.98032 1.23439 0.95413 1.00101 1.03800 0.91268 0.92164 0.91883 0.89332 0.89588 0.74429 0.85438 0.86450 0.86264 0.91902 0.85029 0.81063 0.88346 0.87637 0.87784 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.22 37.16 0.38 -0.91 16 2 C 0.10 0.87 5.61 -4.04 -0.02 0.85 16 3 N -0.56 -6.06 2.80 -166.65 -0.47 -6.53 16 4 C 0.51 6.97 7.73 -11.63 -0.09 6.88 16 5 O -0.52 -7.82 16.10 5.49 0.09 -7.73 16 6 C 0.51 7.61 7.58 -11.63 -0.09 7.52 16 7 O -0.49 -7.76 10.38 5.48 0.06 -7.70 16 8 N -0.63 -10.10 5.35 -10.31 -0.06 -10.16 16 9 C 0.17 3.28 6.39 -83.77 -0.54 2.75 16 10 C -0.21 -3.85 8.69 -39.33 -0.34 -4.19 16 11 C -0.06 -1.11 10.03 -39.64 -0.40 -1.51 16 12 C -0.20 -4.12 9.99 -39.35 -0.39 -4.51 16 13 C 0.17 4.03 6.64 -39.14 -0.26 3.77 16 14 O -0.17 -4.87 9.76 0.04 0.00 -4.87 16 15 C -0.39 -10.85 9.44 30.89 0.29 -10.56 16 16 H 0.09 2.27 5.29 -52.49 -0.28 2.00 16 17 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 18 N -0.86 -25.03 13.67 55.48 0.76 -24.27 16 19 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 C -0.25 -5.44 9.03 -39.19 -0.35 -5.79 16 24 C 0.05 0.54 5.48 -67.93 -0.37 0.16 16 25 C -0.19 -1.33 9.72 -26.69 -0.26 -1.59 16 26 C -0.19 -1.55 10.22 -26.69 -0.27 -1.82 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.42 6.03 -51.93 -0.31 0.11 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.82 7.47 -51.93 -0.39 0.43 16 31 H 0.09 0.54 6.08 -51.93 -0.32 0.23 16 32 H 0.42 6.06 8.27 -40.82 -0.34 5.73 16 33 H 0.13 2.20 5.94 -52.49 -0.31 1.89 16 34 H 0.12 1.73 8.06 -52.48 -0.42 1.30 16 35 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 36 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.13 2.79 5.71 -52.48 -0.30 2.49 16 38 H 0.17 2.00 5.24 -52.04 -0.27 1.73 16 39 H 0.10 0.58 6.16 -51.92 -0.32 0.26 16 40 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 0.77 6.28 -51.93 -0.33 0.45 16 LS Contribution 350.67 15.07 5.28 5.28 Total: -1.00 -31.35 350.67 -7.00 -38.36 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -4.83 Total: 10.21 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -2.81 Total: -7.93 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.24 Total: -40.96 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.15 Total: -20.30 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.35 -7.00 -38.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298928315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.952 kcal (2) G-P(sol) polarization free energy of solvation -31.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds