Wall clock time and date at job start Tue Mar 31 2020 12:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09003 * 109.43709 * 2 1 4 4 O 1.42999 * 109.43802 * 119.89530 * 2 1 3 5 5 C 1.35984 * 116.70923 * 166.44638 * 4 2 1 6 6 C 1.38396 * 120.67424 * 147.16752 * 5 4 2 7 7 C 1.37950 * 119.95905 * 179.27001 * 6 5 4 8 8 C 1.38274 * 120.23324 * 0.77983 * 7 6 5 9 9 C 1.38292 * 120.19777 * 359.46826 * 8 7 6 10 10 C 1.38506 * 119.81226 * 0.02562 * 9 8 7 11 11 N 1.40210 * 120.73733 * 180.02562 * 10 9 8 12 12 C 1.46503 * 120.50445 * 15.45148 * 11 10 9 13 13 C 1.52991 * 109.47367 * 269.72541 * 12 11 10 14 14 C 1.50703 * 109.47555 * 180.02562 * 13 12 11 15 15 O 1.21294 * 119.99514 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00182 * 179.97438 * 14 13 12 17 17 C 1.46496 * 119.99996 * 359.97438 * 16 14 13 18 18 C 1.37101 * 119.99853 * 179.97438 * 16 14 13 19 19 H 1.08005 * 119.99848 * 24.39918 * 18 16 14 20 20 C 1.38941 * 120.00088 * 204.39364 * 18 16 14 21 21 N 1.31415 * 119.99936 * 12.64285 * 20 18 16 22 22 Si 1.86803 * 120.00045 * 192.64310 * 20 18 16 23 23 H 1.48500 * 109.47170 * 60.00050 * 22 20 18 24 24 H 1.48503 * 109.47134 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47072 * 300.00188 * 22 20 18 26 26 C 1.35079 * 118.98774 * 195.17772 * 11 10 9 27 27 O 1.21296 * 120.13393 * 181.90993 * 26 11 10 28 28 H 1.09004 * 109.46633 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47469 * 299.93813 * 1 2 3 30 30 H 1.09004 * 109.46807 * 59.94262 * 1 2 3 31 31 H 1.08003 * 120.05731 * 0.05372 * 6 5 4 32 32 H 1.08003 * 119.89404 * 180.24441 * 7 6 5 33 33 H 1.08000 * 119.90468 * 179.44658 * 8 7 6 34 34 H 1.07996 * 120.09364 * 180.02562 * 9 8 7 35 35 H 1.09000 * 109.47075 * 149.71548 * 12 11 10 36 36 H 1.09007 * 109.46870 * 29.72253 * 12 11 10 37 37 H 1.09000 * 109.47834 * 59.99472 * 13 12 11 38 38 H 1.09007 * 109.46891 * 299.99700 * 13 12 11 39 39 H 1.08994 * 109.47036 * 85.86807 * 17 16 14 40 40 H 1.08999 * 109.46664 * 205.86498 * 17 16 14 41 41 H 1.09001 * 109.47464 * 325.86187 * 17 16 14 42 42 H 0.97006 * 119.99760 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 8 2.0060 -0.6721 1.1690 5 6 3.3230 -1.0103 1.1861 6 6 4.0346 -1.0180 2.3731 7 6 5.3663 -1.3780 2.3756 8 6 5.9983 -1.7163 1.1932 9 6 5.2963 -1.7064 0.0017 10 6 3.9564 -1.3558 -0.0052 11 7 3.2260 -1.3398 -1.2019 12 6 3.7466 -2.0034 -2.3998 13 6 4.5850 -1.0116 -3.2086 14 6 5.1200 -1.6940 -4.4412 15 8 4.8569 -2.8592 -4.6517 16 7 5.8907 -1.0096 -5.3095 17 6 6.2080 0.3978 -5.0554 18 6 6.3779 -1.6306 -6.4305 19 1 5.8665 -2.4910 -6.8366 20 6 7.5293 -1.1532 -7.0443 21 7 8.2879 -0.2760 -6.4263 22 14 7.9989 -1.7581 -8.7481 23 1 6.9160 -1.4244 -9.7079 24 1 9.2596 -1.1006 -9.1768 25 1 8.1942 -3.2299 -8.7144 26 6 2.0324 -0.7080 -1.2319 27 8 1.3673 -0.7109 -2.2463 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5128 0.8905 30 1 -0.3633 0.5147 -0.8895 31 1 3.5450 -0.7546 3.2990 32 1 5.9196 -1.3875 3.3031 33 1 7.0434 -1.9887 1.2000 34 1 5.7915 -1.9713 -0.9208 35 1 2.9152 -2.3580 -3.0090 36 1 4.3680 -2.8492 -2.1055 37 1 5.4164 -0.6570 -2.5994 38 1 3.9636 -0.1658 -3.5029 39 1 7.0838 0.4620 -4.4099 40 1 6.4157 0.8997 -6.0005 41 1 5.3606 0.8790 -4.5671 42 1 9.0920 0.0571 -6.8547 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299519216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:55 Heat of formation + Delta-G solvation = -61.613800 kcal Electronic energy + Delta-G solvation = -26908.680518 eV Core-core repulsion = 23047.830017 eV Total energy + Delta-G solvation = -3860.850500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.71606 -39.04238 -38.59930 -37.77793 -35.91646 -34.70713 -32.31242 -31.87426 -31.12518 -30.38976 -28.93826 -26.55047 -25.68335 -24.30569 -23.46083 -23.11741 -21.98280 -19.49793 -19.33176 -18.82969 -17.47180 -17.04774 -16.86978 -16.14091 -15.57720 -15.24924 -15.17333 -14.89105 -14.67989 -14.56069 -14.24682 -13.96785 -13.93152 -13.40741 -13.12155 -12.84486 -12.60927 -12.45178 -12.35820 -12.07883 -11.91549 -11.64511 -11.41927 -11.34340 -11.28312 -11.23441 -10.87588 -10.78403 -10.43711 -10.41997 -10.20527 -9.94406 -9.03048 -8.81153 -8.48058 -7.92828 -7.69732 -6.35408 -3.91777 0.94867 1.12239 2.22652 2.47702 3.05100 3.17505 3.23095 3.27459 3.57456 3.81680 3.84909 4.12323 4.50705 4.53962 4.66294 4.77975 4.87967 5.05191 5.08061 5.13462 5.25712 5.27851 5.36688 5.41668 5.48273 5.55655 5.69936 5.81002 5.89305 5.97185 5.97670 6.07586 6.22669 6.33968 6.36856 6.40360 6.51384 6.80828 6.84638 7.14722 7.25100 7.54043 7.70516 8.10474 8.44787 9.14775 9.38482 9.93695 10.69565 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018553 B = 0.003388 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.822396 B = 8261.260771 C = 9191.974599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.078 3.922 3 H 0.102 0.898 4 O -0.303 6.303 5 C 0.072 3.928 6 C -0.110 4.110 7 C -0.116 4.116 8 C -0.108 4.108 9 C -0.121 4.121 10 C 0.102 3.898 11 N -0.549 5.549 12 C 0.128 3.872 13 C -0.145 4.145 14 C 0.450 3.550 15 O -0.591 6.591 16 N -0.443 5.443 17 C 0.112 3.888 18 C -0.308 4.308 19 H 0.098 0.902 20 C 0.032 3.968 21 N -0.882 5.882 22 Si 0.927 3.073 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.486 3.514 27 O -0.499 6.499 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.024 0.976 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.242 4.051 18.370 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.019 3.981 3 H 0.119 0.881 4 O -0.219 6.219 5 C 0.026 3.974 6 C -0.129 4.129 7 C -0.135 4.135 8 C -0.127 4.127 9 C -0.142 4.142 10 C 0.007 3.993 11 N -0.273 5.273 12 C 0.008 3.992 13 C -0.186 4.186 14 C 0.238 3.762 15 O -0.477 6.477 16 N -0.161 5.161 17 C -0.032 4.032 18 C -0.436 4.436 19 H 0.116 0.884 20 C -0.172 4.172 21 N -0.521 5.521 22 Si 0.753 3.247 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.197 1.197 26 C 0.274 3.726 27 O -0.373 6.373 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.043 0.957 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.749 3.574 17.679 19.631 hybrid contribution 0.709 0.031 -1.048 1.266 sum -7.040 3.605 16.631 18.416 Atomic orbital electron populations 1.21701 0.89050 1.04362 1.03941 1.22641 0.97970 0.96229 0.81306 0.88074 1.86214 1.21627 1.74335 1.39688 1.18572 0.83588 1.02355 0.92871 1.20390 0.93661 1.02703 0.96184 1.20888 0.93805 1.00273 0.98567 1.21048 1.00305 0.99739 0.91582 1.20917 0.91342 1.01866 1.00031 1.18173 0.92921 1.03209 0.84982 1.45945 1.18886 1.51952 1.10495 1.21475 0.99587 0.94547 0.83629 1.21863 1.00143 0.99572 0.97012 1.19775 0.84993 0.86935 0.84533 1.90525 1.63359 1.16934 1.76836 1.43548 1.43513 1.09191 1.19884 1.21481 0.97002 0.82588 1.02155 1.19617 1.07783 1.14268 1.01929 0.88436 1.25347 0.94850 0.96963 1.00004 1.69986 1.13865 1.31064 1.37232 0.85988 0.77693 0.79136 0.81835 1.19886 1.20920 1.19725 1.21489 0.80710 0.79578 0.90841 1.90771 1.55223 1.58112 1.33157 0.91080 0.90349 0.88982 0.84666 0.85065 0.85005 0.84338 0.88164 0.88823 0.90033 0.90126 0.92953 0.90648 0.95723 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 9.15 37.16 0.34 -0.89 16 2 C 0.08 0.89 3.68 -27.87 -0.10 0.79 16 3 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 4 O -0.30 -3.67 10.09 -19.69 -0.20 -3.87 16 5 C 0.07 0.89 6.44 -39.14 -0.25 0.64 16 6 C -0.11 -1.08 9.98 -39.63 -0.40 -1.47 16 7 C -0.12 -1.02 10.02 -39.67 -0.40 -1.42 16 8 C -0.11 -1.09 10.04 -39.55 -0.40 -1.49 16 9 C -0.12 -1.52 8.96 -39.46 -0.35 -1.87 16 10 C 0.10 1.39 6.38 -83.54 -0.53 0.86 16 11 N -0.55 -8.43 2.72 -113.27 -0.31 -8.74 16 12 C 0.13 2.24 4.06 -4.04 -0.02 2.23 16 13 C -0.14 -2.72 4.49 -27.89 -0.13 -2.84 16 14 C 0.45 10.99 7.63 -10.98 -0.08 10.90 16 15 O -0.59 -16.24 15.70 5.54 0.09 -16.16 16 16 N -0.44 -11.45 3.01 -122.20 -0.37 -11.82 16 17 C 0.11 2.51 8.44 59.84 0.51 3.02 16 18 C -0.31 -8.65 9.24 -14.93 -0.14 -8.79 16 19 H 0.10 2.86 7.45 -52.48 -0.39 2.47 16 20 C 0.03 0.84 5.04 -17.47 -0.09 0.75 16 21 N -0.88 -23.46 10.83 55.50 0.60 -22.86 16 22 Si 0.93 20.80 29.57 -169.99 -5.03 15.77 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 C 0.49 7.38 7.38 -10.85 -0.08 7.30 16 27 O -0.50 -8.92 15.80 5.54 0.09 -8.84 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.84 7.86 -51.93 -0.41 0.43 16 31 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 32 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.14 1.84 6.00 -52.49 -0.32 1.53 16 35 H 0.10 1.95 7.41 -51.93 -0.38 1.57 16 36 H 0.09 1.61 7.00 -51.93 -0.36 1.25 16 37 H 0.08 1.40 7.19 -51.93 -0.37 1.03 16 38 H 0.08 1.50 7.41 -51.93 -0.38 1.11 16 39 H 0.05 1.19 7.83 -51.93 -0.41 0.78 16 40 H 0.07 1.79 6.80 -51.93 -0.35 1.44 16 41 H 0.02 0.47 6.61 -51.93 -0.34 0.12 16 42 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -32.64 348.43 -7.39 -40.02 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.39 Total: 3.54 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -2.12 Total: 7.70 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: -0.07 Total: -43.42 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.02 Total: -28.86 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.64 -7.39 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299519216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.590 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds