Wall clock time and date at job start Tue Mar 31 2020 12:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09003 * 109.43709 * 2 1 4 4 O 1.42999 * 109.43802 * 119.89530 * 2 1 3 5 5 C 1.35984 * 116.70923 * 166.44638 * 4 2 1 6 6 C 1.38396 * 120.67424 * 147.16752 * 5 4 2 7 7 C 1.37950 * 119.95905 * 179.27001 * 6 5 4 8 8 C 1.38274 * 120.23324 * 0.77983 * 7 6 5 9 9 C 1.38292 * 120.19777 * 359.46826 * 8 7 6 10 10 C 1.38506 * 119.81226 * 0.02562 * 9 8 7 11 11 N 1.40210 * 120.73733 * 180.02562 * 10 9 8 12 12 C 1.46503 * 120.50445 * 15.45148 * 11 10 9 13 13 C 1.52991 * 109.47367 * 269.72541 * 12 11 10 14 14 C 1.50703 * 109.47555 * 180.02562 * 13 12 11 15 15 O 1.21294 * 119.99514 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00182 * 179.97438 * 14 13 12 17 17 C 1.46496 * 119.99996 * 359.97438 * 16 14 13 18 18 C 1.37101 * 119.99853 * 179.97438 * 16 14 13 19 19 H 1.08005 * 119.99848 * 24.39918 * 18 16 14 20 20 C 1.38941 * 120.00088 * 204.39364 * 18 16 14 21 21 N 1.31415 * 119.99936 * 12.64285 * 20 18 16 22 22 Si 1.86803 * 120.00045 * 192.64310 * 20 18 16 23 23 H 1.48500 * 109.47170 * 60.00050 * 22 20 18 24 24 H 1.48503 * 109.47134 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47072 * 300.00188 * 22 20 18 26 26 C 1.35079 * 118.98774 * 195.17772 * 11 10 9 27 27 O 1.21296 * 120.13393 * 181.90993 * 26 11 10 28 28 H 1.09004 * 109.46633 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47469 * 299.93813 * 1 2 3 30 30 H 1.09004 * 109.46807 * 59.94262 * 1 2 3 31 31 H 1.08003 * 120.05731 * 0.05372 * 6 5 4 32 32 H 1.08003 * 119.89404 * 180.24441 * 7 6 5 33 33 H 1.08000 * 119.90468 * 179.44658 * 8 7 6 34 34 H 1.07996 * 120.09364 * 180.02562 * 9 8 7 35 35 H 1.09000 * 109.47075 * 149.71548 * 12 11 10 36 36 H 1.09007 * 109.46870 * 29.72253 * 12 11 10 37 37 H 1.09000 * 109.47834 * 59.99472 * 13 12 11 38 38 H 1.09007 * 109.46891 * 299.99700 * 13 12 11 39 39 H 1.08994 * 109.47036 * 85.86807 * 17 16 14 40 40 H 1.08999 * 109.46664 * 205.86498 * 17 16 14 41 41 H 1.09001 * 109.47464 * 325.86187 * 17 16 14 42 42 H 0.97006 * 119.99760 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 8 2.0060 -0.6721 1.1690 5 6 3.3230 -1.0103 1.1861 6 6 4.0346 -1.0180 2.3731 7 6 5.3663 -1.3780 2.3756 8 6 5.9983 -1.7163 1.1932 9 6 5.2963 -1.7064 0.0017 10 6 3.9564 -1.3558 -0.0052 11 7 3.2260 -1.3398 -1.2019 12 6 3.7466 -2.0034 -2.3998 13 6 4.5850 -1.0116 -3.2086 14 6 5.1200 -1.6940 -4.4412 15 8 4.8569 -2.8592 -4.6517 16 7 5.8907 -1.0096 -5.3095 17 6 6.2080 0.3978 -5.0554 18 6 6.3779 -1.6306 -6.4305 19 1 5.8665 -2.4910 -6.8366 20 6 7.5293 -1.1532 -7.0443 21 7 8.2879 -0.2760 -6.4263 22 14 7.9989 -1.7581 -8.7481 23 1 6.9160 -1.4244 -9.7079 24 1 9.2596 -1.1006 -9.1768 25 1 8.1942 -3.2299 -8.7144 26 6 2.0324 -0.7080 -1.2319 27 8 1.3673 -0.7109 -2.2463 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5128 0.8905 30 1 -0.3633 0.5147 -0.8895 31 1 3.5450 -0.7546 3.2990 32 1 5.9196 -1.3875 3.3031 33 1 7.0434 -1.9887 1.2000 34 1 5.7915 -1.9713 -0.9208 35 1 2.9152 -2.3580 -3.0090 36 1 4.3680 -2.8492 -2.1055 37 1 5.4164 -0.6570 -2.5994 38 1 3.9636 -0.1658 -3.5029 39 1 7.0838 0.4620 -4.4099 40 1 6.4157 0.8997 -6.0005 41 1 5.3606 0.8790 -4.5671 42 1 9.0920 0.0571 -6.8547 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299519216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:54 Heat of formation + Delta-G solvation = -81.851346 kcal Electronic energy + Delta-G solvation = -26909.558083 eV Core-core repulsion = 23047.830017 eV Total energy + Delta-G solvation = -3861.728066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.73979 -40.53278 -40.01690 -38.78642 -37.15022 -36.64290 -33.83001 -33.17836 -32.65296 -31.26162 -29.90960 -28.37992 -27.22913 -25.92890 -24.36306 -24.27088 -23.08338 -20.73993 -20.49229 -20.26423 -18.97886 -18.55261 -18.10060 -17.68038 -16.85960 -16.63126 -16.47154 -16.38655 -15.96759 -15.75878 -15.54044 -15.40928 -15.16150 -14.45115 -14.41413 -14.13964 -13.97507 -13.61276 -13.40469 -13.32175 -13.30506 -13.16426 -13.11028 -12.83610 -12.68209 -12.49096 -12.25960 -12.19613 -12.15185 -12.09850 -11.47282 -11.07350 -11.04491 -10.47200 -9.73874 -9.67209 -8.92833 -8.39135 -6.04849 0.04285 0.28715 1.16871 1.33225 1.36468 1.39678 1.50019 1.92494 2.14520 2.25911 2.73364 2.82176 3.02629 3.03536 3.61637 3.67363 3.77693 3.82795 3.87303 3.91625 4.08757 4.26711 4.30463 4.34105 4.43675 4.51208 4.64866 4.68440 4.72151 4.76898 4.82883 4.95058 4.99821 5.12388 5.26240 5.27239 5.31564 5.40267 5.54268 5.69909 5.84735 6.04037 6.28061 6.41088 6.56085 7.09586 7.37979 7.93546 8.64139 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018553 B = 0.003388 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.822396 B = 8261.260771 C = 9191.974599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.083 3.917 3 H 0.125 0.875 4 O -0.305 6.305 5 C 0.061 3.939 6 C -0.105 4.105 7 C -0.100 4.100 8 C -0.109 4.109 9 C -0.137 4.137 10 C 0.073 3.927 11 N -0.551 5.551 12 C 0.141 3.859 13 C -0.123 4.123 14 C 0.440 3.560 15 O -0.631 6.631 16 N -0.458 5.458 17 C 0.121 3.879 18 C -0.350 4.350 19 H 0.071 0.929 20 C 0.002 3.998 21 N -0.893 5.893 22 Si 0.990 3.010 23 H -0.269 1.269 24 H -0.267 1.267 25 H -0.275 1.275 26 C 0.477 3.523 27 O -0.538 6.538 28 H 0.059 0.941 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.163 0.837 32 H 0.170 0.830 33 H 0.152 0.848 34 H 0.122 0.878 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.496 5.416 20.868 22.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.024 3.976 3 H 0.142 0.858 4 O -0.220 6.220 5 C 0.015 3.985 6 C -0.123 4.123 7 C -0.118 4.118 8 C -0.127 4.127 9 C -0.157 4.157 10 C -0.021 4.021 11 N -0.275 5.275 12 C 0.019 3.981 13 C -0.164 4.164 14 C 0.229 3.771 15 O -0.519 6.519 16 N -0.177 5.177 17 C -0.022 4.022 18 C -0.478 4.478 19 H 0.089 0.911 20 C -0.201 4.201 21 N -0.531 5.531 22 Si 0.813 3.187 23 H -0.194 1.194 24 H -0.191 1.191 25 H -0.201 1.201 26 C 0.266 3.734 27 O -0.415 6.415 28 H 0.078 0.922 29 H 0.126 0.874 30 H 0.110 0.890 31 H 0.181 0.819 32 H 0.187 0.813 33 H 0.170 0.830 34 H 0.140 0.860 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.982 4.974 20.229 21.970 hybrid contribution 0.549 -0.415 -1.711 1.844 sum -6.433 4.558 18.518 20.127 Atomic orbital electron populations 1.21737 0.87465 1.04099 1.05322 1.22808 0.99063 0.96456 0.79244 0.85789 1.86210 1.21766 1.74576 1.39419 1.18876 0.83748 1.02753 0.93132 1.20799 0.93972 1.01407 0.96157 1.21339 0.93509 0.97618 0.99382 1.21356 1.01232 0.99012 0.91120 1.20948 0.91301 1.02833 1.00616 1.18399 0.93440 1.05592 0.84658 1.45885 1.19335 1.51868 1.10397 1.21074 0.98216 0.94387 0.84409 1.21673 1.00727 0.99278 0.94679 1.20645 0.84138 0.86729 0.85539 1.90484 1.64525 1.18893 1.77974 1.43816 1.43658 1.10445 1.19739 1.21436 0.98266 0.80977 1.01500 1.19596 1.09209 1.15025 1.03967 0.91104 1.26090 0.94074 0.96748 1.03153 1.70042 1.13873 1.30914 1.38317 0.85059 0.77958 0.78372 0.77333 1.19367 1.19138 1.20087 1.22338 0.80180 0.79116 0.91752 1.90743 1.56219 1.59655 1.34847 0.92200 0.87421 0.89042 0.81917 0.81301 0.83015 0.86035 0.90909 0.89153 0.88044 0.89545 0.93292 0.92187 0.92325 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 9.15 71.99 0.66 -1.56 16 2 C 0.08 1.81 3.68 29.85 0.11 1.92 16 3 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 4 O -0.30 -6.76 10.09 -93.37 -0.94 -7.70 16 5 C 0.06 1.37 6.44 22.56 0.15 1.52 16 6 C -0.10 -1.66 9.98 22.24 0.22 -1.43 16 7 C -0.10 -1.35 10.02 22.21 0.22 -1.12 16 8 C -0.11 -1.91 10.04 22.29 0.22 -1.69 16 9 C -0.14 -3.34 8.96 22.35 0.20 -3.14 16 10 C 0.07 1.93 6.38 38.11 0.24 2.18 16 11 N -0.55 -17.27 2.72 -630.48 -1.71 -18.98 16 12 C 0.14 5.20 4.06 86.38 0.35 5.55 16 13 C -0.12 -4.72 4.49 29.85 0.13 -4.59 16 14 C 0.44 22.35 7.63 87.66 0.67 23.02 16 15 O -0.63 -36.58 15.70 -3.07 -0.05 -36.63 16 16 N -0.46 -24.38 3.01 -658.91 -1.98 -26.36 16 17 C 0.12 5.47 8.44 127.77 1.08 6.55 16 18 C -0.35 -20.34 9.24 84.04 0.78 -19.56 16 19 H 0.07 4.39 7.45 -2.91 -0.02 4.37 16 20 C 0.00 0.09 5.04 84.92 0.43 0.52 16 21 N -0.89 -47.33 10.83 21.66 0.23 -47.09 16 22 Si 0.99 42.73 29.57 68.60 2.03 44.76 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 24 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 25 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 26 C 0.48 14.66 7.38 87.61 0.65 15.30 16 27 O -0.54 -19.98 15.80 -3.08 -0.05 -20.03 16 28 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.59 7.86 -2.39 -0.02 1.58 16 31 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 33 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.12 3.32 6.00 -2.91 -0.02 3.30 16 35 H 0.07 3.06 7.41 -2.39 -0.02 3.04 16 36 H 0.09 3.32 7.00 -2.38 -0.02 3.30 16 37 H 0.10 3.50 7.19 -2.39 -0.02 3.48 16 38 H 0.09 3.24 7.41 -2.38 -0.02 3.22 16 39 H 0.05 2.21 7.83 -2.39 -0.02 2.19 16 40 H 0.06 2.86 6.80 -2.39 -0.02 2.85 16 41 H 0.06 2.20 6.61 -2.39 -0.02 2.18 16 42 H 0.28 13.62 8.31 -92.70 -0.77 12.85 16 Total: -1.00 -73.76 348.43 4.68 -69.09 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 1.04 Total: 19.50 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: 6.11 Total: 23.45 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -3.46 Total: -92.44 kcal Atomic # 8 Polarization: -63.32 SS G_CDS: -1.04 Total: -64.36 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -73.76 4.68 -69.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299519216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.766 kcal (2) G-P(sol) polarization free energy of solvation -73.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds