Wall clock time and date at job start Tue Mar 31 2020 12:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.41593 * 2 1 4 4 O 1.42999 * 109.43983 * 240.08536 * 2 1 3 5 5 C 1.35977 * 116.71648 * 286.33937 * 4 2 1 6 6 C 1.38396 * 120.66270 * 147.15886 * 5 4 2 7 7 C 1.38316 * 119.87173 * 180.09175 * 6 5 4 8 8 C 1.38280 * 120.26111 * 359.97438 * 7 6 5 9 9 C 1.38289 * 120.20063 * 0.02562 * 8 7 6 10 10 C 1.38508 * 119.81407 * 359.97438 * 9 8 7 11 11 N 1.40205 * 120.74310 * 180.02562 * 10 9 8 12 12 C 1.46501 * 120.51291 * 15.46669 * 11 10 9 13 13 C 1.53004 * 109.46892 * 90.00313 * 12 11 10 14 14 C 1.50692 * 109.47285 * 180.02562 * 13 12 11 15 15 O 1.21303 * 119.99798 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00354 * 180.02562 * 14 13 12 17 17 C 1.46501 * 119.99817 * 359.97438 * 16 14 13 18 18 C 1.37101 * 120.00191 * 180.02562 * 16 14 13 19 19 H 1.08006 * 120.00078 * 24.38802 * 18 16 14 20 20 C 1.38950 * 120.00075 * 204.39237 * 18 16 14 21 21 N 1.31416 * 119.99557 * 12.65836 * 20 18 16 22 22 Si 1.86794 * 120.00221 * 192.65484 * 20 18 16 23 23 H 1.48505 * 109.46856 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47246 * 120.00000 * 22 20 18 25 25 H 1.48505 * 109.47199 * 240.00398 * 22 20 18 26 26 C 1.35098 * 118.97863 * 195.45033 * 11 10 9 27 27 O 1.21296 * 120.13382 * 181.65522 * 26 11 10 28 28 H 1.09000 * 109.46685 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46687 * 299.91624 * 1 2 3 30 30 H 1.08997 * 109.47201 * 59.91528 * 1 2 3 31 31 H 1.07997 * 120.06529 * 0.06102 * 6 5 4 32 32 H 1.08005 * 119.87011 * 180.27272 * 7 6 5 33 33 H 1.07998 * 119.90102 * 179.97438 * 8 7 6 34 34 H 1.07994 * 120.09576 * 179.97438 * 9 8 7 35 35 H 1.08995 * 109.47262 * 210.00168 * 12 11 10 36 36 H 1.08996 * 109.46672 * 330.00675 * 12 11 10 37 37 H 1.08998 * 109.46923 * 300.00487 * 13 12 11 38 38 H 1.09001 * 109.47015 * 60.00210 * 13 12 11 39 39 H 1.09000 * 109.47111 * 85.86615 * 17 16 14 40 40 H 1.09006 * 109.46796 * 205.86816 * 17 16 14 41 41 H 1.08994 * 109.46981 * 325.86456 * 17 16 14 42 42 H 0.97002 * 119.99407 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8924 1.0280 0.0000 4 8 2.0060 -0.6725 -1.1688 5 6 1.8872 -2.0270 -1.1858 6 6 1.6580 -2.7005 -2.3728 7 6 1.5380 -4.0785 -2.3709 8 6 1.6467 -4.7858 -1.1877 9 6 1.8757 -4.1197 0.0024 10 6 1.9968 -2.7400 0.0071 11 7 2.2296 -2.0450 1.2023 12 6 2.6814 -2.7565 2.4006 13 6 4.2108 -2.7913 2.4267 14 6 4.6756 -3.5237 3.6589 15 8 3.8635 -3.9733 4.4398 16 7 5.9937 -3.6784 3.8940 17 6 6.9746 -3.1350 2.9512 18 6 6.4165 -4.3452 5.0148 19 1 5.7688 -5.0668 5.4905 20 6 7.6784 -4.0927 5.5388 21 7 8.3662 -3.0528 5.1234 22 14 8.3970 -5.2312 6.8336 23 1 7.4299 -6.3191 7.1279 24 1 9.6642 -5.8179 6.3286 25 1 8.6678 -4.4614 8.0744 26 6 2.0312 -0.7090 1.2319 27 8 2.2549 -0.0825 2.2462 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5126 0.8908 30 1 -0.3633 0.5151 -0.8892 31 1 1.5725 -2.1513 -3.2988 32 1 1.3635 -4.6045 -3.2979 33 1 1.5516 -5.8616 -1.1928 34 1 1.9599 -4.6738 0.9256 35 1 2.3145 -2.2420 3.2887 36 1 2.2950 -3.7756 2.3853 37 1 4.5777 -3.3058 1.5386 38 1 4.5972 -1.7722 2.4420 39 1 7.1737 -2.0915 3.1953 40 1 7.8999 -3.7072 3.0196 41 1 6.5800 -3.2022 1.9374 42 1 9.2473 -2.8768 5.4890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299519220.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:58 Heat of formation + Delta-G solvation = -60.685841 kcal Electronic energy + Delta-G solvation = -26995.770267 eV Core-core repulsion = 23134.960006 eV Total energy + Delta-G solvation = -3860.810261 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.78858 -39.01545 -38.54803 -37.81171 -35.87407 -34.68057 -32.28626 -31.80030 -31.06489 -30.49545 -28.98161 -26.50321 -25.62763 -24.39696 -23.80974 -23.25835 -21.79073 -19.35086 -19.31266 -18.79796 -17.51488 -16.87841 -16.40833 -16.22658 -15.76130 -15.59126 -15.18105 -14.97796 -14.59359 -14.45378 -14.21526 -14.11202 -13.96013 -13.40360 -13.23103 -12.83420 -12.72272 -12.54486 -12.31606 -12.17329 -11.85008 -11.57484 -11.45615 -11.35564 -11.31732 -11.24637 -10.89772 -10.72252 -10.44421 -10.32029 -10.22396 -9.89006 -9.02250 -8.83781 -8.45582 -7.92385 -7.67070 -6.32609 -3.89347 0.93414 1.09428 2.24398 2.45515 3.09882 3.14943 3.25396 3.32203 3.53548 3.81617 3.86856 4.14228 4.46898 4.51227 4.63653 4.78622 4.86555 4.98914 5.06970 5.11113 5.17747 5.27022 5.28212 5.40454 5.43525 5.50520 5.66529 5.75425 5.81258 5.90954 6.02138 6.18637 6.20175 6.31046 6.39373 6.39826 6.49517 6.82726 6.85199 7.19140 7.24611 7.56539 7.70674 8.12947 8.47017 9.17001 9.41060 9.96112 10.72469 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019628 B = 0.003339 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.171099 B = 8383.022138 C = 9008.719354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.079 3.921 3 H 0.149 0.851 4 O -0.301 6.301 5 C 0.075 3.925 6 C -0.111 4.111 7 C -0.117 4.117 8 C -0.109 4.109 9 C -0.124 4.124 10 C 0.104 3.896 11 N -0.548 5.548 12 C 0.128 3.872 13 C -0.142 4.142 14 C 0.451 3.549 15 O -0.593 6.593 16 N -0.443 5.443 17 C 0.112 3.888 18 C -0.308 4.308 19 H 0.099 0.901 20 C 0.030 3.970 21 N -0.881 5.881 22 Si 0.926 3.074 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.488 3.512 27 O -0.500 6.500 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.025 0.975 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.104 1.959 -17.708 22.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.020 3.980 3 H 0.166 0.834 4 O -0.215 6.215 5 C 0.028 3.972 6 C -0.130 4.130 7 C -0.136 4.136 8 C -0.128 4.128 9 C -0.145 4.145 10 C 0.009 3.991 11 N -0.272 5.272 12 C 0.007 3.993 13 C -0.184 4.184 14 C 0.239 3.761 15 O -0.478 6.478 16 N -0.162 5.162 17 C -0.032 4.032 18 C -0.435 4.435 19 H 0.117 0.883 20 C -0.173 4.173 21 N -0.520 5.520 22 Si 0.753 3.247 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.207 1.207 26 C 0.276 3.724 27 O -0.373 6.373 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.156 0.844 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.043 0.957 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.058 2.347 -16.758 21.374 hybrid contribution 0.722 -0.401 0.788 1.141 sum -12.336 1.946 -15.970 20.274 Atomic orbital electron populations 1.22326 0.92588 1.03922 1.04439 1.22892 0.96459 0.97530 0.81127 0.83355 1.86272 1.79139 1.16222 1.39902 1.18600 1.03253 0.82561 0.92753 1.20493 1.01917 0.94303 0.96247 1.20966 1.01183 0.92972 0.98509 1.21011 0.99858 1.00260 0.91636 1.20864 1.02198 0.91494 0.99919 1.18188 1.03021 0.92791 0.85073 1.45921 1.63024 1.07409 1.10859 1.21490 0.94519 0.97818 0.85462 1.21801 0.95381 1.02195 0.98977 1.19770 0.83345 0.85039 0.87973 1.90515 1.52987 1.54276 1.50066 1.43564 1.03540 1.48329 1.20724 1.21482 0.93294 0.99946 0.88501 1.19703 1.00198 1.19102 1.04545 0.88323 1.25370 0.97344 0.96336 0.98252 1.70014 1.13178 1.25167 1.43654 0.85861 0.78757 0.80039 0.80035 1.19190 1.20644 1.20715 1.21425 0.78161 0.82060 0.90798 1.90805 1.48534 1.64800 1.33170 0.91553 0.89935 0.89773 0.84637 0.85113 0.85116 0.84435 0.88204 0.88842 0.90307 0.89895 0.92978 0.90641 0.95679 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 9.30 37.16 0.35 -1.19 16 2 C 0.08 0.89 3.81 -27.87 -0.11 0.78 16 3 H 0.15 1.39 8.14 -51.93 -0.42 0.97 16 4 O -0.30 -3.59 10.18 -19.67 -0.20 -3.79 16 5 C 0.07 0.89 5.85 -39.09 -0.23 0.66 16 6 C -0.11 -1.05 10.00 -39.49 -0.39 -1.44 16 7 C -0.12 -0.98 10.04 -39.54 -0.40 -1.37 16 8 C -0.11 -1.01 10.04 -39.55 -0.40 -1.41 16 9 C -0.12 -1.45 9.36 -39.46 -0.37 -1.82 16 10 C 0.10 1.37 6.39 -83.49 -0.53 0.84 16 11 N -0.55 -8.31 2.72 -113.23 -0.31 -8.62 16 12 C 0.13 2.22 4.49 -4.04 -0.02 2.21 16 13 C -0.14 -2.77 4.63 -27.88 -0.13 -2.90 16 14 C 0.45 11.19 7.63 -10.99 -0.08 11.11 16 15 O -0.59 -16.35 15.70 5.54 0.09 -16.27 16 16 N -0.44 -11.66 3.01 -122.19 -0.37 -12.03 16 17 C 0.11 2.58 8.44 59.85 0.51 3.09 16 18 C -0.31 -8.73 9.24 -14.93 -0.14 -8.87 16 19 H 0.10 2.91 7.45 -52.48 -0.39 2.52 16 20 C 0.03 0.81 5.04 -17.47 -0.09 0.73 16 21 N -0.88 -24.04 10.84 55.50 0.60 -23.44 16 22 Si 0.93 20.99 29.57 -169.99 -5.03 15.96 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.49 7.44 6.92 -10.84 -0.07 7.37 16 27 O -0.50 -9.30 16.77 5.54 0.09 -9.20 16 28 H 0.07 0.63 7.81 -51.93 -0.41 0.22 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.14 1.62 6.12 -52.49 -0.32 1.29 16 35 H 0.10 1.95 7.45 -51.93 -0.39 1.56 16 36 H 0.09 1.52 5.92 -51.93 -0.31 1.21 16 37 H 0.08 1.40 7.41 -51.93 -0.38 1.01 16 38 H 0.08 1.67 8.11 -51.93 -0.42 1.25 16 39 H 0.05 1.25 7.83 -51.93 -0.41 0.84 16 40 H 0.07 1.82 6.80 -51.93 -0.35 1.47 16 41 H 0.02 0.48 6.61 -51.93 -0.34 0.14 16 42 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 349.68 15.07 5.27 5.27 Total: -1.00 -33.53 349.68 -7.35 -40.88 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.39 Total: 3.45 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -2.11 Total: 7.78 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.07 Total: -44.09 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.02 Total: -29.26 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.53 -7.35 -40.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299519220.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.803 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds