Wall clock time and date at job start Tue Mar 31 2020 12:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.41593 * 2 1 4 4 O 1.42999 * 109.43983 * 240.08536 * 2 1 3 5 5 C 1.35977 * 116.71648 * 286.33937 * 4 2 1 6 6 C 1.38396 * 120.66270 * 147.15886 * 5 4 2 7 7 C 1.38316 * 119.87173 * 180.09175 * 6 5 4 8 8 C 1.38280 * 120.26111 * 359.97438 * 7 6 5 9 9 C 1.38289 * 120.20063 * 0.02562 * 8 7 6 10 10 C 1.38508 * 119.81407 * 359.97438 * 9 8 7 11 11 N 1.40205 * 120.74310 * 180.02562 * 10 9 8 12 12 C 1.46501 * 120.51291 * 15.46669 * 11 10 9 13 13 C 1.53004 * 109.46892 * 90.00313 * 12 11 10 14 14 C 1.50692 * 109.47285 * 180.02562 * 13 12 11 15 15 O 1.21303 * 119.99798 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00354 * 180.02562 * 14 13 12 17 17 C 1.46501 * 119.99817 * 359.97438 * 16 14 13 18 18 C 1.37101 * 120.00191 * 180.02562 * 16 14 13 19 19 H 1.08006 * 120.00078 * 24.38802 * 18 16 14 20 20 C 1.38950 * 120.00075 * 204.39237 * 18 16 14 21 21 N 1.31416 * 119.99557 * 12.65836 * 20 18 16 22 22 Si 1.86794 * 120.00221 * 192.65484 * 20 18 16 23 23 H 1.48505 * 109.46856 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47246 * 120.00000 * 22 20 18 25 25 H 1.48505 * 109.47199 * 240.00398 * 22 20 18 26 26 C 1.35098 * 118.97863 * 195.45033 * 11 10 9 27 27 O 1.21296 * 120.13382 * 181.65522 * 26 11 10 28 28 H 1.09000 * 109.46685 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46687 * 299.91624 * 1 2 3 30 30 H 1.08997 * 109.47201 * 59.91528 * 1 2 3 31 31 H 1.07997 * 120.06529 * 0.06102 * 6 5 4 32 32 H 1.08005 * 119.87011 * 180.27272 * 7 6 5 33 33 H 1.07998 * 119.90102 * 179.97438 * 8 7 6 34 34 H 1.07994 * 120.09576 * 179.97438 * 9 8 7 35 35 H 1.08995 * 109.47262 * 210.00168 * 12 11 10 36 36 H 1.08996 * 109.46672 * 330.00675 * 12 11 10 37 37 H 1.08998 * 109.46923 * 300.00487 * 13 12 11 38 38 H 1.09001 * 109.47015 * 60.00210 * 13 12 11 39 39 H 1.09000 * 109.47111 * 85.86615 * 17 16 14 40 40 H 1.09006 * 109.46796 * 205.86816 * 17 16 14 41 41 H 1.08994 * 109.46981 * 325.86456 * 17 16 14 42 42 H 0.97002 * 119.99407 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8924 1.0280 0.0000 4 8 2.0060 -0.6725 -1.1688 5 6 1.8872 -2.0270 -1.1858 6 6 1.6580 -2.7005 -2.3728 7 6 1.5380 -4.0785 -2.3709 8 6 1.6467 -4.7858 -1.1877 9 6 1.8757 -4.1197 0.0024 10 6 1.9968 -2.7400 0.0071 11 7 2.2296 -2.0450 1.2023 12 6 2.6814 -2.7565 2.4006 13 6 4.2108 -2.7913 2.4267 14 6 4.6756 -3.5237 3.6589 15 8 3.8635 -3.9733 4.4398 16 7 5.9937 -3.6784 3.8940 17 6 6.9746 -3.1350 2.9512 18 6 6.4165 -4.3452 5.0148 19 1 5.7688 -5.0668 5.4905 20 6 7.6784 -4.0927 5.5388 21 7 8.3662 -3.0528 5.1234 22 14 8.3970 -5.2312 6.8336 23 1 7.4299 -6.3191 7.1279 24 1 9.6642 -5.8179 6.3286 25 1 8.6678 -4.4614 8.0744 26 6 2.0312 -0.7090 1.2319 27 8 2.2549 -0.0825 2.2462 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5126 0.8908 30 1 -0.3633 0.5151 -0.8892 31 1 1.5725 -2.1513 -3.2988 32 1 1.3635 -4.6045 -3.2979 33 1 1.5516 -5.8616 -1.1928 34 1 1.9599 -4.6738 0.9256 35 1 2.3145 -2.2420 3.2887 36 1 2.2950 -3.7756 2.3853 37 1 4.5777 -3.3058 1.5386 38 1 4.5972 -1.7722 2.4420 39 1 7.1737 -2.0915 3.1953 40 1 7.8999 -3.7072 3.0196 41 1 6.5800 -3.2022 1.9374 42 1 9.2473 -2.8768 5.4890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299519220.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:58 Heat of formation + Delta-G solvation = -81.905263 kcal Electronic energy + Delta-G solvation = -26996.690410 eV Core-core repulsion = 23134.960006 eV Total energy + Delta-G solvation = -3861.730404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.78846 -40.54158 -39.97198 -38.78095 -37.12771 -36.63348 -33.84406 -33.16422 -32.49713 -31.31387 -29.95522 -28.37388 -27.19281 -25.91578 -24.85499 -24.32068 -22.90254 -20.70404 -20.31986 -20.23332 -18.99603 -18.62415 -17.83705 -17.30278 -17.05548 -16.67296 -16.54522 -16.43325 -16.04229 -15.90096 -15.61871 -15.20774 -15.18990 -14.61920 -14.44925 -14.14902 -13.97362 -13.52792 -13.52141 -13.42134 -13.31073 -13.19978 -13.09521 -12.84534 -12.69235 -12.49158 -12.28450 -12.14789 -12.12438 -12.07792 -11.52599 -11.06417 -11.00101 -10.48515 -9.74979 -9.64562 -8.89940 -8.39383 -6.05764 0.06331 0.30852 1.18202 1.32636 1.33613 1.39500 1.53980 1.91187 2.22065 2.25396 2.72437 2.85257 3.01438 3.03615 3.59013 3.69550 3.76106 3.81523 3.91540 3.93715 4.06314 4.20088 4.30936 4.35673 4.47233 4.56285 4.58395 4.61240 4.68539 4.73820 4.79879 4.92377 4.99130 5.03500 5.25821 5.28302 5.33542 5.40300 5.55824 5.71309 5.85871 6.03610 6.29783 6.40025 6.56415 7.08559 7.37314 7.92358 8.64550 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019628 B = 0.003339 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.171099 B = 8383.022138 C = 9008.719354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.085 3.915 3 H 0.167 0.833 4 O -0.303 6.303 5 C 0.063 3.937 6 C -0.107 4.107 7 C -0.101 4.101 8 C -0.108 4.108 9 C -0.137 4.137 10 C 0.073 3.927 11 N -0.549 5.549 12 C 0.139 3.861 13 C -0.122 4.122 14 C 0.442 3.558 15 O -0.628 6.628 16 N -0.459 5.459 17 C 0.122 3.878 18 C -0.347 4.347 19 H 0.076 0.924 20 C -0.004 4.004 21 N -0.899 5.899 22 Si 0.994 3.006 23 H -0.270 1.270 24 H -0.263 1.263 25 H -0.277 1.277 26 C 0.479 3.521 27 O -0.548 6.548 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.161 0.839 32 H 0.168 0.832 33 H 0.155 0.845 34 H 0.128 0.872 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.351 1.271 -20.629 24.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.026 3.974 3 H 0.184 0.816 4 O -0.218 6.218 5 C 0.017 3.983 6 C -0.126 4.126 7 C -0.120 4.120 8 C -0.126 4.126 9 C -0.157 4.157 10 C -0.021 4.021 11 N -0.272 5.272 12 C 0.017 3.983 13 C -0.163 4.163 14 C 0.231 3.769 15 O -0.516 6.516 16 N -0.178 5.178 17 C -0.021 4.021 18 C -0.475 4.475 19 H 0.093 0.907 20 C -0.206 4.206 21 N -0.537 5.537 22 Si 0.817 3.183 23 H -0.195 1.195 24 H -0.187 1.187 25 H -0.203 1.203 26 C 0.268 3.732 27 O -0.425 6.425 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.130 0.870 31 H 0.179 0.821 32 H 0.186 0.814 33 H 0.173 0.827 34 H 0.146 0.854 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.303 1.655 -19.747 23.868 hybrid contribution 0.759 -0.233 1.604 1.790 sum -12.544 1.422 -18.143 22.103 Atomic orbital electron populations 1.22309 0.90501 1.03841 1.05807 1.23021 0.97942 0.97468 0.78948 0.81594 1.86262 1.79520 1.16449 1.39601 1.18899 1.03846 0.82509 0.93084 1.20887 1.00605 0.94964 0.96140 1.21426 0.98499 0.92588 0.99463 1.21350 0.98679 1.01569 0.91012 1.20973 1.02903 0.91079 1.00773 1.18432 1.05658 0.93440 0.84521 1.45838 1.62899 1.07596 1.10909 1.21129 0.93038 0.98204 0.85939 1.21613 0.96764 1.00902 0.97025 1.20604 0.82760 0.84398 0.89106 1.90476 1.53826 1.55629 1.51693 1.43841 1.04587 1.48423 1.20925 1.21413 0.92457 0.98483 0.89729 1.19716 1.01109 1.20348 1.06325 0.90658 1.26191 0.96887 0.97517 0.99957 1.70089 1.13515 1.25823 1.44265 0.84875 0.78238 0.77896 0.77304 1.19481 1.18728 1.20252 1.22316 0.77257 0.81966 0.91639 1.90773 1.50837 1.65709 1.35148 0.92338 0.89834 0.87031 0.82141 0.81431 0.82729 0.85430 0.91156 0.88038 0.87964 0.90603 0.94360 0.91863 0.91899 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 9.30 71.98 0.67 -2.01 16 2 C 0.09 1.84 3.81 29.85 0.11 1.95 16 3 H 0.17 2.93 8.14 -2.39 -0.02 2.91 16 4 O -0.30 -6.69 10.18 -93.29 -0.95 -7.64 16 5 C 0.06 1.36 5.85 22.59 0.13 1.50 16 6 C -0.11 -1.63 10.00 22.33 0.22 -1.41 16 7 C -0.10 -1.24 10.04 22.30 0.22 -1.02 16 8 C -0.11 -1.67 10.04 22.29 0.22 -1.44 16 9 C -0.14 -3.05 9.36 22.35 0.21 -2.84 16 10 C 0.07 1.86 6.39 38.15 0.24 2.10 16 11 N -0.55 -17.02 2.72 -630.34 -1.71 -18.73 16 12 C 0.14 5.07 4.49 86.38 0.39 5.46 16 13 C -0.12 -4.87 4.63 29.85 0.14 -4.73 16 14 C 0.44 22.75 7.63 87.65 0.67 23.42 16 15 O -0.63 -36.37 15.70 -3.10 -0.05 -36.42 16 16 N -0.46 -24.86 3.01 -658.89 -1.98 -26.85 16 17 C 0.12 5.70 8.44 127.77 1.08 6.78 16 18 C -0.35 -20.33 9.24 84.04 0.78 -19.56 16 19 H 0.08 4.66 7.45 -2.91 -0.02 4.63 16 20 C 0.00 -0.21 5.04 84.93 0.43 0.22 16 21 N -0.90 -49.28 10.84 21.66 0.23 -49.05 16 22 Si 0.99 43.21 29.57 68.60 2.03 45.24 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 25 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 26 C 0.48 14.98 6.92 87.61 0.61 15.59 16 27 O -0.55 -21.46 16.77 -3.08 -0.05 -21.51 16 28 H 0.06 1.04 7.81 -2.39 -0.02 1.02 16 29 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 32 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 33 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.13 3.01 6.12 -2.91 -0.02 2.99 16 35 H 0.07 2.97 7.45 -2.39 -0.02 2.95 16 36 H 0.10 3.48 5.92 -2.39 -0.01 3.46 16 37 H 0.10 3.57 7.41 -2.39 -0.02 3.55 16 38 H 0.08 3.15 8.11 -2.39 -0.02 3.13 16 39 H 0.04 1.86 7.83 -2.39 -0.02 1.84 16 40 H 0.06 3.07 6.80 -2.38 -0.02 3.05 16 41 H 0.06 2.40 6.61 -2.39 -0.02 2.38 16 42 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -76.04 349.68 4.68 -71.36 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 1.04 Total: 19.59 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: 6.12 Total: 24.02 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -3.46 Total: -94.63 kcal Atomic # 8 Polarization: -64.52 SS G_CDS: -1.05 Total: -65.57 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -76.04 4.68 -71.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299519220.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.550 kcal (2) G-P(sol) polarization free energy of solvation -76.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds