Wall clock time and date at job start Tue Mar 31 2020 13:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42901 * 109.46939 * 2 1 4 4 C 1.35973 * 116.99782 * 180.02562 * 3 2 1 5 5 C 1.38552 * 120.08339 * 0.24427 * 4 3 2 6 6 C 1.38246 * 120.01511 * 180.29991 * 5 4 3 7 7 C 1.38286 * 120.17770 * 359.72755 * 6 5 4 8 8 C 1.38198 * 120.16281 * 359.97438 * 7 6 5 9 9 C 1.38729 * 119.98540 * 359.97438 * 8 7 6 10 10 N 1.40122 * 120.08943 * 180.02562 * 9 8 7 11 11 C 1.46764 * 124.34895 * 270.00019 * 10 9 8 12 12 C 1.54480 * 105.47611 * 196.99580 * 11 10 9 13 13 H 1.09002 * 110.96924 * 216.46793 * 12 11 10 14 14 C 1.50698 * 110.96894 * 92.73562 * 12 11 10 15 15 O 1.21290 * 120.00378 * 0.02562 * 14 12 11 16 16 N 1.34779 * 119.99758 * 180.02562 * 14 12 11 17 17 C 1.37098 * 120.00175 * 180.02562 * 16 14 12 18 18 H 1.08005 * 119.99513 * 0.02562 * 17 16 14 19 19 C 1.38947 * 120.00480 * 180.02562 * 17 16 14 20 20 N 1.31412 * 119.99630 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00241 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47466 * 59.99405 * 21 19 17 23 23 H 1.48504 * 109.47050 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46927 * 299.99218 * 21 19 17 25 25 C 1.54784 * 101.68916 * 334.38924 * 12 11 10 26 26 C 1.34420 * 124.35054 * 89.97506 * 10 9 8 27 27 O 1.21293 * 124.93924 * 359.57555 * 26 10 9 28 28 H 1.08997 * 109.46932 * 60.00451 * 1 2 3 29 29 H 1.09001 * 109.46657 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46979 * 300.00101 * 1 2 3 31 31 H 1.09000 * 109.47244 * 239.99441 * 2 1 3 32 32 H 1.08997 * 109.46932 * 119.99548 * 2 1 3 33 33 H 1.07998 * 119.99234 * 0.02844 * 5 4 3 34 34 H 1.07999 * 119.91271 * 179.70262 * 6 5 4 35 35 H 1.07998 * 119.91775 * 179.97438 * 7 6 5 36 36 H 1.07994 * 120.00886 * 180.02562 * 8 7 6 37 37 H 1.09008 * 110.24788 * 315.99461 * 11 10 9 38 38 H 1.09004 * 110.24843 * 77.90467 * 11 10 9 39 39 H 0.97002 * 120.00188 * 0.02562 * 16 14 12 40 40 H 0.97008 * 119.99971 * 180.02562 * 20 19 17 41 41 H 1.08995 * 110.61806 * 266.40039 * 25 12 11 42 42 H 1.09001 * 110.42713 * 143.70879 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 4.2000 0.4279 -0.0062 6 6 5.5703 0.6106 -0.0005 7 6 6.1013 1.8874 0.0052 8 6 5.2647 2.9874 0.0046 9 6 3.8886 2.8119 -0.0022 10 7 3.0383 3.9257 -0.0033 11 6 2.5302 4.5808 1.2077 12 6 1.3321 5.4371 0.7413 13 1 1.2830 6.3742 1.2959 14 6 0.0404 4.6710 0.8667 15 8 0.0480 3.5347 1.2908 16 7 -1.1232 5.2486 0.5077 17 6 -2.2984 4.5519 0.6222 18 1 -2.2917 3.5403 1.0006 19 6 -3.4980 5.1471 0.2516 20 7 -3.5061 6.3781 -0.2083 21 14 -5.0992 4.1980 0.4084 22 1 -5.3116 3.8163 1.8277 23 1 -6.2264 5.0500 -0.0486 24 1 -5.0327 2.9733 -0.4290 25 6 1.6889 5.6938 -0.7428 26 6 2.5836 4.5316 -1.1137 27 8 2.8553 4.1983 -2.2478 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.7885 -0.5706 -0.0106 34 1 6.2279 -0.2461 0.0000 35 1 7.1724 2.0253 0.0101 36 1 5.6821 3.9835 0.0087 37 1 2.2015 3.8343 1.9309 38 1 3.3012 5.2151 1.6453 39 1 -1.1292 6.1573 0.1682 40 1 -4.3436 6.7938 -0.4667 41 1 2.2241 6.6370 -0.8513 42 1 0.7879 5.6925 -1.3564 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299655298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:23 Heat of formation + Delta-G solvation = -75.035163 kcal Electronic energy + Delta-G solvation = -27474.230863 eV Core-core repulsion = 23612.798368 eV Total energy + Delta-G solvation = -3861.432494 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.82937 -39.53195 -37.94718 -37.30549 -35.76385 -33.91738 -32.90725 -31.54107 -31.13793 -29.94471 -28.57811 -27.30297 -25.26082 -23.95771 -22.91970 -22.16592 -21.51080 -19.61952 -19.03970 -18.05593 -17.90414 -16.98085 -16.71353 -15.91322 -15.81933 -15.10859 -14.93904 -14.81201 -14.35457 -14.31386 -13.97010 -13.65895 -13.41665 -13.23328 -13.00372 -12.91780 -12.59198 -12.33101 -11.96694 -11.81540 -11.71841 -11.59255 -11.53634 -11.28388 -11.05726 -11.02470 -10.84558 -10.55743 -10.45399 -10.21543 -9.62054 -9.49597 -8.87749 -8.59062 -8.37709 -8.05510 -7.96930 -6.42523 -3.82826 1.20962 1.45278 2.88946 3.18222 3.21277 3.25077 3.28730 3.42608 3.68044 3.83062 4.14724 4.68133 4.75879 4.82417 4.87046 4.91385 5.08740 5.11934 5.19192 5.25799 5.34859 5.36193 5.41638 5.50546 5.63429 5.65321 5.74296 5.87636 5.90902 6.12838 6.13925 6.20976 6.21849 6.33287 6.40344 6.43825 6.53471 6.66016 7.01215 7.35662 7.54149 7.63536 8.03411 8.53395 8.59293 9.16409 9.52557 10.03561 10.75045 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016645 B = 0.004323 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.776772 B = 6475.461336 C = 7573.606876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.280 6.280 4 C 0.147 3.853 5 C -0.212 4.212 6 C -0.077 4.077 7 C -0.160 4.160 8 C -0.073 4.073 9 C 0.113 3.887 10 N -0.562 5.562 11 C 0.125 3.875 12 C -0.115 4.115 13 H 0.110 0.890 14 C 0.446 3.554 15 O -0.573 6.573 16 N -0.559 5.559 17 C -0.298 4.298 18 H 0.102 0.898 19 C 0.024 3.976 20 N -0.900 5.900 21 Si 0.929 3.071 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.274 1.274 25 C -0.143 4.143 26 C 0.530 3.470 27 O -0.533 6.533 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.108 0.892 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.155 -5.956 2.433 16.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.192 6.192 4 C 0.098 3.902 5 C -0.232 4.232 6 C -0.095 4.095 7 C -0.179 4.179 8 C -0.092 4.092 9 C 0.023 3.977 10 N -0.292 5.292 11 C 0.003 3.997 12 C -0.137 4.137 13 H 0.128 0.872 14 C 0.231 3.769 15 O -0.457 6.457 16 N -0.194 5.194 17 C -0.427 4.427 18 H 0.120 0.880 19 C -0.178 4.178 20 N -0.541 5.541 21 Si 0.756 3.244 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.183 4.183 26 C 0.319 3.681 27 O -0.409 6.409 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.115 0.885 38 H 0.088 0.912 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.126 0.874 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 14.955 -6.673 2.054 16.504 hybrid contribution -0.843 -0.079 -0.121 0.855 sum 14.112 -6.752 1.933 15.763 Atomic orbital electron populations 1.21714 0.92122 1.01845 1.04980 1.22780 0.96695 0.81926 1.00242 1.86438 1.17159 1.28706 1.86857 1.19467 0.83787 0.93272 0.93644 1.21184 0.94267 0.97858 1.09872 1.20948 0.94180 0.97287 0.97059 1.20859 0.99572 0.92022 1.05446 1.21130 0.91159 0.99617 0.97320 1.16717 0.88852 0.83724 1.08422 1.45292 1.47540 1.28375 1.08008 1.22016 0.93888 0.96451 0.87308 1.22231 0.95127 1.00179 0.96154 0.87220 1.19431 0.84322 0.87965 0.85217 1.90549 1.86230 1.18380 1.50570 1.41804 1.05229 1.15909 1.56486 1.19623 0.83072 0.99423 1.40604 0.88013 1.25239 0.99601 0.96013 0.96947 1.69598 1.28375 1.12687 1.43452 0.85953 0.80590 0.79091 0.78796 1.19937 1.20969 1.19947 1.22369 1.01209 0.97762 0.97004 1.20952 0.79495 0.83697 0.83970 1.90681 1.60463 1.68549 1.21169 0.91487 0.91111 0.90370 0.92778 0.92502 0.85250 0.85763 0.85647 0.85305 0.88496 0.91155 0.77424 0.91794 0.87398 0.87259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 10.28 37.16 0.38 -1.91 16 2 C 0.06 0.87 5.46 37.16 0.20 1.07 16 3 O -0.28 -5.30 9.88 -19.66 -0.19 -5.50 16 4 C 0.15 2.48 6.70 -39.07 -0.26 2.21 16 5 C -0.21 -2.82 9.04 -39.46 -0.36 -3.18 16 6 C -0.08 -0.86 10.04 -39.56 -0.40 -1.25 16 7 C -0.16 -1.80 10.04 -39.58 -0.40 -2.20 16 8 C -0.07 -0.98 9.96 -39.41 -0.39 -1.37 16 9 C 0.11 1.90 5.40 -83.49 -0.45 1.45 16 10 N -0.56 -9.82 2.70 -112.12 -0.30 -10.12 16 11 C 0.13 1.95 6.61 -3.12 -0.02 1.93 16 12 C -0.11 -1.90 3.54 -90.06 -0.32 -2.22 16 13 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 14 C 0.45 9.99 7.05 -10.99 -0.08 9.91 16 15 O -0.57 -14.58 15.11 5.55 0.08 -14.50 16 16 N -0.56 -13.61 5.22 -10.96 -0.06 -13.67 16 17 C -0.30 -8.06 9.68 -14.93 -0.14 -8.20 16 18 H 0.10 2.88 7.16 -52.48 -0.38 2.51 16 19 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 20 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 21 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.14 -2.32 6.42 -26.66 -0.17 -2.49 16 26 C 0.53 10.19 7.98 -10.86 -0.09 10.11 16 27 O -0.53 -12.01 17.71 5.55 0.10 -11.92 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.05 0.70 7.65 -51.93 -0.40 0.30 16 32 H 0.06 0.71 7.68 -51.93 -0.40 0.32 16 33 H 0.13 1.44 6.30 -52.49 -0.33 1.11 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.10 1.72 7.02 -51.92 -0.36 1.36 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.11 1.97 7.86 -51.93 -0.41 1.56 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -33.99 361.13 -7.35 -41.35 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.54 Total: 12.09 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -2.59 Total: 4.39 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.36 Total: -47.12 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.01 Total: -31.91 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.99 -7.35 -41.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299655298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.688 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds