Wall clock time and date at job start Tue Mar 31 2020 13:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42901 * 109.46939 * 2 1 4 4 C 1.35973 * 116.99782 * 180.02562 * 3 2 1 5 5 C 1.38552 * 120.08339 * 0.24427 * 4 3 2 6 6 C 1.38246 * 120.01511 * 180.29991 * 5 4 3 7 7 C 1.38286 * 120.17770 * 359.72755 * 6 5 4 8 8 C 1.38198 * 120.16281 * 359.97438 * 7 6 5 9 9 C 1.38729 * 119.98540 * 359.97438 * 8 7 6 10 10 N 1.40122 * 120.08943 * 180.02562 * 9 8 7 11 11 C 1.46764 * 124.34895 * 270.00019 * 10 9 8 12 12 C 1.54480 * 105.47611 * 196.99580 * 11 10 9 13 13 H 1.09002 * 110.96924 * 216.46793 * 12 11 10 14 14 C 1.50698 * 110.96894 * 92.73562 * 12 11 10 15 15 O 1.21290 * 120.00378 * 0.02562 * 14 12 11 16 16 N 1.34779 * 119.99758 * 180.02562 * 14 12 11 17 17 C 1.37098 * 120.00175 * 180.02562 * 16 14 12 18 18 H 1.08005 * 119.99513 * 0.02562 * 17 16 14 19 19 C 1.38947 * 120.00480 * 180.02562 * 17 16 14 20 20 N 1.31412 * 119.99630 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00241 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47466 * 59.99405 * 21 19 17 23 23 H 1.48504 * 109.47050 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46927 * 299.99218 * 21 19 17 25 25 C 1.54784 * 101.68916 * 334.38924 * 12 11 10 26 26 C 1.34420 * 124.35054 * 89.97506 * 10 9 8 27 27 O 1.21293 * 124.93924 * 359.57555 * 26 10 9 28 28 H 1.08997 * 109.46932 * 60.00451 * 1 2 3 29 29 H 1.09001 * 109.46657 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46979 * 300.00101 * 1 2 3 31 31 H 1.09000 * 109.47244 * 239.99441 * 2 1 3 32 32 H 1.08997 * 109.46932 * 119.99548 * 2 1 3 33 33 H 1.07998 * 119.99234 * 0.02844 * 5 4 3 34 34 H 1.07999 * 119.91271 * 179.70262 * 6 5 4 35 35 H 1.07998 * 119.91775 * 179.97438 * 7 6 5 36 36 H 1.07994 * 120.00886 * 180.02562 * 8 7 6 37 37 H 1.09008 * 110.24788 * 315.99461 * 11 10 9 38 38 H 1.09004 * 110.24843 * 77.90467 * 11 10 9 39 39 H 0.97002 * 120.00188 * 0.02562 * 16 14 12 40 40 H 0.97008 * 119.99971 * 180.02562 * 20 19 17 41 41 H 1.08995 * 110.61806 * 266.40039 * 25 12 11 42 42 H 1.09001 * 110.42713 * 143.70879 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 4.2000 0.4279 -0.0062 6 6 5.5703 0.6106 -0.0005 7 6 6.1013 1.8874 0.0052 8 6 5.2647 2.9874 0.0046 9 6 3.8886 2.8119 -0.0022 10 7 3.0383 3.9257 -0.0033 11 6 2.5302 4.5808 1.2077 12 6 1.3321 5.4371 0.7413 13 1 1.2830 6.3742 1.2959 14 6 0.0404 4.6710 0.8667 15 8 0.0480 3.5347 1.2908 16 7 -1.1232 5.2486 0.5077 17 6 -2.2984 4.5519 0.6222 18 1 -2.2917 3.5403 1.0006 19 6 -3.4980 5.1471 0.2516 20 7 -3.5061 6.3781 -0.2083 21 14 -5.0992 4.1980 0.4084 22 1 -5.3116 3.8163 1.8277 23 1 -6.2264 5.0500 -0.0486 24 1 -5.0327 2.9733 -0.4290 25 6 1.6889 5.6938 -0.7428 26 6 2.5836 4.5316 -1.1137 27 8 2.8553 4.1983 -2.2478 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.7885 -0.5706 -0.0106 34 1 6.2279 -0.2461 0.0000 35 1 7.1724 2.0253 0.0101 36 1 5.6821 3.9835 0.0087 37 1 2.2015 3.8343 1.9309 38 1 3.3012 5.2151 1.6453 39 1 -1.1292 6.1573 0.1682 40 1 -4.3436 6.7938 -0.4667 41 1 2.2241 6.6370 -0.8513 42 1 0.7879 5.6925 -1.3564 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299655298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:22 Heat of formation + Delta-G solvation = -98.120314 kcal Electronic energy + Delta-G solvation = -27475.231910 eV Core-core repulsion = 23612.798368 eV Total energy + Delta-G solvation = -3862.433542 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.12828 -40.80471 -39.68073 -38.44483 -37.25871 -35.87849 -34.20380 -33.11782 -32.67989 -31.02269 -29.75544 -28.67064 -27.14883 -25.09206 -24.29689 -23.48945 -22.60780 -20.91071 -20.72294 -19.85345 -19.23950 -18.29066 -18.20001 -17.15502 -17.08240 -16.70170 -16.21444 -16.18852 -15.99163 -15.70633 -15.42341 -15.24262 -14.64849 -14.58504 -14.51033 -14.24955 -13.96005 -13.46329 -13.44474 -13.34990 -12.97799 -12.90636 -12.85261 -12.73027 -12.57578 -12.45618 -12.34345 -12.12726 -11.95671 -11.71128 -11.46732 -11.05729 -10.24420 -9.97198 -9.90161 -9.89005 -9.14602 -8.44293 -5.91329 0.20186 0.43313 1.38187 1.40310 1.44957 1.50550 1.98985 2.05858 2.29553 2.31829 2.68815 3.12507 3.19167 3.35849 3.61577 3.83213 3.89722 3.93697 3.95338 4.12442 4.20631 4.25810 4.28816 4.41428 4.48468 4.54530 4.57460 4.65696 4.74663 4.81626 4.82397 4.88228 4.94865 5.16197 5.28577 5.36090 5.43374 5.48072 5.64097 5.87657 6.00768 6.03876 6.49477 6.62736 7.13858 7.15763 7.59832 8.15649 8.72903 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016645 B = 0.004323 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.776772 B = 6475.461336 C = 7573.606876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 O -0.325 6.325 4 C 0.108 3.892 5 C -0.215 4.215 6 C -0.069 4.069 7 C -0.150 4.150 8 C -0.077 4.077 9 C 0.071 3.929 10 N -0.557 5.557 11 C 0.127 3.873 12 C -0.104 4.104 13 H 0.156 0.844 14 C 0.442 3.558 15 O -0.608 6.608 16 N -0.570 5.570 17 C -0.327 4.327 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.919 5.919 21 Si 0.986 3.014 22 H -0.270 1.270 23 H -0.271 1.271 24 H -0.277 1.277 25 C -0.133 4.133 26 C 0.515 3.485 27 O -0.580 6.580 28 H 0.037 0.963 29 H 0.109 0.891 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.147 0.853 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.146 0.854 37 H 0.070 0.930 38 H 0.122 0.878 39 H 0.396 0.604 40 H 0.276 0.724 41 H 0.157 0.843 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.574 -6.048 3.075 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.019 4.019 3 O -0.239 6.239 4 C 0.061 3.939 5 C -0.234 4.234 6 C -0.087 4.087 7 C -0.168 4.168 8 C -0.096 4.096 9 C -0.019 4.019 10 N -0.285 5.285 11 C 0.006 3.994 12 C -0.126 4.126 13 H 0.173 0.827 14 C 0.229 3.771 15 O -0.494 6.494 16 N -0.207 5.207 17 C -0.457 4.457 18 H 0.095 0.905 19 C -0.211 4.211 20 N -0.560 5.560 21 Si 0.810 3.190 22 H -0.195 1.195 23 H -0.196 1.196 24 H -0.202 1.202 25 C -0.173 4.173 26 C 0.305 3.695 27 O -0.460 6.460 28 H 0.056 0.944 29 H 0.128 0.872 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.165 0.835 34 H 0.182 0.818 35 H 0.181 0.819 36 H 0.164 0.836 37 H 0.088 0.912 38 H 0.140 0.860 39 H 0.230 0.770 40 H 0.086 0.914 41 H 0.175 0.825 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.395 -6.757 2.734 18.860 hybrid contribution -1.460 -0.151 -0.281 1.495 sum 15.935 -6.908 2.452 17.540 Atomic orbital electron populations 1.21696 0.93282 1.03336 1.01759 1.22932 0.95747 0.81156 1.02077 1.86362 1.18989 1.30725 1.87806 1.19872 0.83405 0.94668 0.95950 1.21484 0.95094 0.97658 1.09181 1.21451 0.93619 0.98804 0.94813 1.21352 1.01207 0.91297 1.02988 1.21402 0.89924 1.01414 0.96892 1.17269 0.90207 0.83550 1.10886 1.45386 1.46971 1.28299 1.07877 1.22167 0.94765 0.96195 0.86289 1.22246 0.91800 1.01245 0.97306 0.82691 1.20526 0.85754 0.87824 0.82977 1.90541 1.87151 1.20243 1.51424 1.41852 1.05302 1.16048 1.57454 1.19560 0.84915 0.99045 1.42167 0.90528 1.25941 1.02025 0.96882 0.96275 1.69658 1.29257 1.13445 1.43645 0.85091 0.77221 0.77879 0.78784 1.19496 1.19553 1.20219 1.22388 1.00212 0.98936 0.95772 1.21490 0.79689 0.84517 0.83816 1.90634 1.62365 1.70124 1.22861 0.94353 0.87240 0.93723 0.90938 0.90341 0.83527 0.81839 0.81877 0.83642 0.91161 0.85993 0.76955 0.91410 0.82531 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 10.28 71.98 0.74 -3.94 16 2 C 0.06 1.68 5.46 71.98 0.39 2.07 16 3 O -0.33 -12.99 9.88 -93.24 -0.92 -13.91 16 4 C 0.11 3.70 6.70 22.60 0.15 3.86 16 5 C -0.22 -5.39 9.04 22.35 0.20 -5.19 16 6 C -0.07 -1.30 10.04 22.28 0.22 -1.08 16 7 C -0.15 -2.83 10.04 22.27 0.22 -2.61 16 8 C -0.08 -1.92 9.96 22.38 0.22 -1.70 16 9 C 0.07 2.36 5.40 38.19 0.21 2.57 16 10 N -0.56 -19.44 2.70 -627.21 -1.69 -21.13 16 11 C 0.13 3.83 6.61 86.83 0.57 4.41 16 12 C -0.10 -3.34 3.54 -10.43 -0.04 -3.38 16 13 H 0.16 3.60 8.14 -2.39 -0.02 3.59 16 14 C 0.44 20.44 7.05 87.66 0.62 21.06 16 15 O -0.61 -32.66 15.11 -3.06 -0.05 -32.71 16 16 N -0.57 -28.71 5.22 -306.98 -1.60 -30.32 16 17 C -0.33 -18.47 9.68 84.04 0.81 -17.66 16 18 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 19 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 20 N -0.92 -49.58 13.05 21.66 0.28 -49.30 16 21 Si 0.99 43.29 29.55 68.60 2.03 45.32 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 25 C -0.13 -4.20 6.42 30.64 0.20 -4.00 16 26 C 0.51 20.05 7.98 87.90 0.70 20.75 16 27 O -0.58 -27.04 17.71 -3.07 -0.05 -27.09 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 1.87 7.65 -2.39 -0.02 1.85 16 32 H 0.08 1.97 7.68 -2.39 -0.02 1.95 16 33 H 0.15 2.99 6.30 -2.91 -0.02 2.97 16 34 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 35 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 37 H 0.07 2.54 7.02 -2.38 -0.02 2.52 16 38 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.40 18.95 7.90 -92.71 -0.73 18.21 16 40 H 0.28 14.07 8.31 -92.70 -0.77 13.30 16 41 H 0.16 3.39 8.14 -2.39 -0.02 3.37 16 42 H 0.09 3.19 7.86 -2.39 -0.02 3.17 16 Total: -1.00 -80.84 361.13 4.01 -76.83 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: 0.32 Total: 37.31 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 5.70 Total: 15.01 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -3.01 Total: -100.75 kcal Atomic # 8 Polarization: -72.69 SS G_CDS: -1.02 Total: -73.71 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -80.84 4.01 -76.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299655298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.294 kcal (2) G-P(sol) polarization free energy of solvation -80.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds