Wall clock time and date at job start Tue Mar 31 2020 13:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46811 * 2 1 4 4 C 1.50691 * 109.47521 * 239.99930 * 2 1 3 5 5 O 1.20831 * 120.00259 * 239.99813 * 4 2 1 6 6 O 1.34235 * 119.99692 * 59.99866 * 4 2 1 7 7 N 1.46497 * 109.46986 * 119.99739 * 2 1 3 8 8 C 1.34782 * 119.99922 * 234.09110 * 7 2 1 9 9 O 1.21591 * 119.99500 * 181.49722 * 8 7 2 10 10 N 1.34768 * 120.00000 * 1.50377 * 8 7 2 11 11 C 1.39959 * 119.99723 * 175.51785 * 10 8 7 12 12 C 1.39285 * 119.94771 * 37.85228 * 11 10 8 13 13 C 1.38491 * 120.42849 * 179.71844 * 12 11 10 14 14 C 1.37689 * 120.31954 * 0.55408 * 13 12 11 15 15 C 1.40733 * 119.88430 * 359.71918 * 14 13 12 16 16 C 1.41410 * 120.21346 * 180.02562 * 15 14 13 17 17 H 1.07991 * 120.00229 * 205.34112 * 16 15 14 18 18 C 1.39934 * 119.99377 * 25.34296 * 16 15 14 19 19 N 1.30827 * 120.00305 * 14.11266 * 18 16 15 20 20 Si 1.86804 * 119.99801 * 194.11266 * 18 16 15 21 21 H 1.48497 * 109.46824 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47343 * 119.99914 * 20 18 16 23 23 H 1.48504 * 109.46764 * 240.00055 * 20 18 16 24 24 C 1.38240 * 119.94444 * 218.12024 * 11 10 8 25 25 C 1.46504 * 120.00288 * 54.09168 * 7 2 1 26 26 C 1.53000 * 117.50119 * 228.55652 * 25 7 2 27 27 C 1.52998 * 117.50080 * 159.93107 * 25 7 2 28 28 H 1.09003 * 109.46811 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47355 * 300.00016 * 1 2 3 30 30 H 1.08991 * 109.46967 * 60.00403 * 1 2 3 31 31 H 0.96706 * 116.99337 * 180.02562 * 6 4 2 32 32 H 0.96998 * 120.00293 * 355.51401 * 10 8 7 33 33 H 1.08001 * 119.78704 * 359.97438 * 12 11 10 34 34 H 1.08001 * 119.84216 * 180.25393 * 13 12 11 35 35 H 1.08002 * 120.05718 * 179.74340 * 14 13 12 36 36 H 0.96997 * 120.00143 * 179.97438 * 19 18 16 37 37 H 1.07990 * 120.15973 * 359.97438 * 24 11 10 38 38 H 1.09001 * 115.55336 * 14.24753 * 25 7 2 39 39 H 1.09001 * 117.49343 * 145.02088 * 26 25 7 40 40 H 1.08999 * 117.49501 * 359.97438 * 26 25 7 41 41 H 1.09000 * 117.49767 * 0.02562 * 27 25 7 42 42 H 1.08996 * 117.49720 * 214.98246 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.7272 -1.6927 -1.1195 6 8 1.7082 -0.2517 -2.4495 7 7 2.0183 -0.6905 1.1962 8 6 2.8884 -0.0753 2.0215 9 8 3.3146 -0.6585 2.9996 10 7 3.2858 1.1861 1.7627 11 6 4.1149 1.8583 2.6681 12 6 5.1248 1.1661 3.3320 13 6 5.9546 1.8225 4.2255 14 6 5.7827 3.1654 4.4760 15 6 4.7628 3.8767 3.8168 16 6 4.5803 5.2562 4.0683 17 1 3.6120 5.7094 3.9160 18 6 5.6545 6.0340 4.5146 19 7 6.8750 5.5692 4.4381 20 14 5.3459 7.7361 5.2197 21 1 3.8895 8.0252 5.1954 22 1 5.8382 7.7888 6.6197 23 1 6.0646 8.7476 4.4038 24 6 3.9264 3.2069 2.9061 25 6 1.5610 -2.0498 1.4954 26 6 1.0712 -2.3336 2.9168 27 6 2.4164 -2.8899 2.4458 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 2.0537 -0.7410 -3.2088 32 1 2.9973 1.6282 0.9489 33 1 5.2644 0.1114 3.1457 34 1 6.7374 1.2773 4.7321 35 1 6.4296 3.6722 5.1767 36 1 7.6197 6.1085 4.7471 37 1 3.1411 3.7436 2.3947 38 1 1.0603 -2.5681 0.6776 39 1 0.2483 -3.0388 3.0341 40 1 1.0897 -1.5091 3.6295 41 1 3.3193 -2.4311 2.8488 42 1 2.4785 -3.9609 2.2533 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313485971.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:03 Heat of formation + Delta-G solvation = -40.788971 kcal Electronic energy + Delta-G solvation = -26790.900250 eV Core-core repulsion = 22930.952782 eV Total energy + Delta-G solvation = -3859.947468 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.19134 -40.00566 -37.90908 -36.52231 -36.20525 -35.45285 -34.05900 -32.88341 -30.66943 -29.81174 -27.97449 -25.40670 -25.23333 -23.34018 -22.17632 -22.08796 -21.09148 -20.71317 -19.33704 -18.41570 -17.81575 -17.69574 -16.93877 -16.08084 -15.89039 -15.44735 -15.04668 -14.93192 -14.61227 -14.30058 -13.99570 -13.74445 -13.30908 -13.20554 -12.91428 -12.85492 -12.51084 -12.25522 -11.94551 -11.78383 -11.68824 -11.35950 -11.30939 -11.16806 -11.11156 -10.74522 -10.60116 -10.50654 -10.24772 -10.07166 -9.69669 -9.37172 -9.11869 -8.94057 -8.49502 -7.44309 -6.91383 -6.70934 -4.36452 1.88081 2.26219 2.75817 2.79986 2.85056 3.08634 3.13662 3.22319 3.51332 3.81822 3.95287 4.10612 4.45996 4.53633 4.68183 4.81154 4.96000 5.05053 5.22532 5.25756 5.35762 5.55176 5.70203 5.75133 5.85195 6.13576 6.18278 6.26935 6.44355 6.53333 6.65337 6.74135 6.89615 6.95505 7.04698 7.19695 7.30780 7.58264 7.62765 7.76660 8.04429 8.07809 8.19922 8.32709 8.63492 8.82836 8.91259 8.99553 10.22808 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018426 B = 0.003251 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.252686 B = 8610.639623 C = 9262.486870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.152 3.848 3 H 0.124 0.876 4 C 0.460 3.540 5 O -0.493 6.493 6 O -0.514 6.514 7 N -0.587 5.587 8 C 0.708 3.292 9 O -0.549 6.549 10 N -0.680 5.680 11 C 0.162 3.838 12 C -0.218 4.218 13 C -0.099 4.099 14 C -0.163 4.163 15 C 0.120 3.880 16 C -0.463 4.463 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.799 5.799 20 Si 0.909 3.091 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.275 1.275 24 C -0.242 4.242 25 C 0.095 3.905 26 C -0.187 4.187 27 C -0.186 4.186 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.411 0.589 32 H 0.391 0.609 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.279 0.721 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.141 0.859 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.693 -9.227 -10.545 18.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.045 3.955 3 H 0.141 0.859 4 C 0.299 3.701 5 O -0.379 6.379 6 O -0.326 6.326 7 N -0.323 5.323 8 C 0.411 3.589 9 O -0.425 6.425 10 N -0.329 5.329 11 C 0.070 3.930 12 C -0.239 4.239 13 C -0.118 4.118 14 C -0.183 4.183 15 C 0.117 3.883 16 C -0.493 4.493 17 H 0.095 0.905 18 C -0.142 4.142 19 N -0.425 5.425 20 Si 0.733 3.267 21 H -0.185 1.185 22 H -0.198 1.198 23 H -0.201 1.201 24 C -0.264 4.264 25 C -0.009 4.009 26 C -0.226 4.226 27 C -0.224 4.224 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.270 0.730 32 H 0.227 0.773 33 H 0.123 0.877 34 H 0.110 0.890 35 H 0.140 0.860 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.139 0.861 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.159 0.841 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.102 -9.646 -9.419 17.465 hybrid contribution 0.072 0.658 -0.857 1.083 sum -11.030 -8.988 -10.277 17.552 Atomic orbital electron populations 1.22105 0.90720 1.03925 1.04505 1.20520 0.97256 0.96547 0.81220 0.85857 1.24070 0.77602 0.83314 0.85086 1.90777 1.34507 1.25645 1.86971 1.84526 1.72302 1.59125 1.16668 1.46399 1.47359 1.15695 1.22845 1.15888 0.78765 0.81660 0.82618 1.90787 1.58858 1.63645 1.29209 1.42897 1.52178 1.13403 1.24441 1.17224 0.91114 0.91236 0.93399 1.20424 0.98921 0.98979 1.05552 1.20623 0.97999 0.94953 0.98196 1.21467 1.01898 0.92358 1.02550 1.17365 0.90070 0.92850 0.88039 1.19538 0.96807 0.93240 1.39760 0.90538 1.25875 0.94500 1.00420 0.93386 1.69816 0.99408 1.37965 1.35262 0.86259 0.79774 0.81421 0.79217 1.18504 1.19770 1.20071 1.20697 1.06773 0.92798 1.06125 1.21244 1.03965 0.82365 0.93375 1.23312 0.98038 1.03798 0.97457 1.23878 0.98378 0.98145 1.01954 0.91309 0.89932 0.89785 0.73010 0.77250 0.87748 0.89036 0.85967 0.91019 0.88784 0.86055 0.89018 0.88246 0.84117 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.03 37.16 0.34 -0.81 16 2 C 0.15 1.57 3.14 -69.09 -0.22 1.35 16 3 H 0.12 1.16 5.49 -51.93 -0.28 0.87 16 4 C 0.46 4.89 7.49 36.00 0.27 5.16 16 5 O -0.49 -7.01 16.20 -18.75 -0.30 -7.32 16 6 O -0.51 -3.78 13.33 -39.27 -0.52 -4.30 16 7 N -0.59 -8.14 2.45 -165.55 -0.41 -8.55 16 8 C 0.71 12.72 7.85 -86.92 -0.68 12.04 16 9 O -0.55 -11.54 9.67 5.29 0.05 -11.49 16 10 N -0.68 -12.33 5.22 -14.27 -0.07 -12.40 16 11 C 0.16 3.66 6.24 -83.76 -0.52 3.14 16 12 C -0.22 -5.23 8.69 -39.10 -0.34 -5.57 16 13 C -0.10 -2.42 10.02 -39.69 -0.40 -2.81 16 14 C -0.16 -4.29 8.69 -38.84 -0.34 -4.62 16 15 C 0.12 3.17 5.58 -106.85 -0.60 2.57 16 16 C -0.46 -12.13 9.07 -37.74 -0.34 -12.47 16 17 H 0.08 1.92 7.88 -52.49 -0.41 1.51 16 18 C 0.07 1.87 5.21 -17.34 -0.09 1.78 16 19 N -0.80 -20.54 10.79 55.55 0.60 -19.94 16 20 Si 0.91 18.53 29.58 -169.99 -5.03 13.50 16 21 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 24 C -0.24 -5.79 9.71 -38.68 -0.38 -6.17 16 25 C 0.09 1.23 4.75 -67.93 -0.32 0.91 16 26 C -0.19 -2.42 9.85 -26.73 -0.26 -2.68 16 27 C -0.19 -2.68 9.65 -26.73 -0.26 -2.94 16 28 H 0.07 0.48 7.22 -51.93 -0.37 0.11 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.48 8.11 -51.93 -0.42 0.06 16 31 H 0.41 1.45 9.10 45.56 0.41 1.87 16 32 H 0.39 5.74 6.22 -40.82 -0.25 5.48 16 33 H 0.10 2.51 6.42 -52.49 -0.34 2.18 16 34 H 0.09 2.04 8.06 -52.49 -0.42 1.61 16 35 H 0.12 3.31 6.07 -52.49 -0.32 2.99 16 36 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 37 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 38 H 0.12 1.35 7.37 -51.93 -0.38 0.97 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.10 1.53 7.53 -51.93 -0.39 1.14 16 41 H 0.14 2.54 5.21 -52.15 -0.27 2.27 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 348.99 15.07 5.26 5.26 Total: -1.00 -32.37 348.99 -8.85 -41.22 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -4.28 Total: 15.14 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -4.14 Total: -11.12 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.12 Total: -40.88 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.78 Total: -23.10 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.37 -8.85 -41.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313485971.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.427 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds