Wall clock time and date at job start Tue Mar 31 2020 13:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46811 * 2 1 4 4 C 1.50691 * 109.47521 * 239.99930 * 2 1 3 5 5 O 1.20831 * 120.00259 * 239.99813 * 4 2 1 6 6 O 1.34235 * 119.99692 * 59.99866 * 4 2 1 7 7 N 1.46497 * 109.46986 * 119.99739 * 2 1 3 8 8 C 1.34782 * 119.99922 * 234.09110 * 7 2 1 9 9 O 1.21591 * 119.99500 * 181.49722 * 8 7 2 10 10 N 1.34768 * 120.00000 * 1.50377 * 8 7 2 11 11 C 1.39959 * 119.99723 * 175.51785 * 10 8 7 12 12 C 1.39285 * 119.94771 * 37.85228 * 11 10 8 13 13 C 1.38491 * 120.42849 * 179.71844 * 12 11 10 14 14 C 1.37689 * 120.31954 * 0.55408 * 13 12 11 15 15 C 1.40733 * 119.88430 * 359.71918 * 14 13 12 16 16 C 1.41410 * 120.21346 * 180.02562 * 15 14 13 17 17 H 1.07991 * 120.00229 * 205.34112 * 16 15 14 18 18 C 1.39934 * 119.99377 * 25.34296 * 16 15 14 19 19 N 1.30827 * 120.00305 * 14.11266 * 18 16 15 20 20 Si 1.86804 * 119.99801 * 194.11266 * 18 16 15 21 21 H 1.48497 * 109.46824 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47343 * 119.99914 * 20 18 16 23 23 H 1.48504 * 109.46764 * 240.00055 * 20 18 16 24 24 C 1.38240 * 119.94444 * 218.12024 * 11 10 8 25 25 C 1.46504 * 120.00288 * 54.09168 * 7 2 1 26 26 C 1.53000 * 117.50119 * 228.55652 * 25 7 2 27 27 C 1.52998 * 117.50080 * 159.93107 * 25 7 2 28 28 H 1.09003 * 109.46811 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47355 * 300.00016 * 1 2 3 30 30 H 1.08991 * 109.46967 * 60.00403 * 1 2 3 31 31 H 0.96706 * 116.99337 * 180.02562 * 6 4 2 32 32 H 0.96998 * 120.00293 * 355.51401 * 10 8 7 33 33 H 1.08001 * 119.78704 * 359.97438 * 12 11 10 34 34 H 1.08001 * 119.84216 * 180.25393 * 13 12 11 35 35 H 1.08002 * 120.05718 * 179.74340 * 14 13 12 36 36 H 0.96997 * 120.00143 * 179.97438 * 19 18 16 37 37 H 1.07990 * 120.15973 * 359.97438 * 24 11 10 38 38 H 1.09001 * 115.55336 * 14.24753 * 25 7 2 39 39 H 1.09001 * 117.49343 * 145.02088 * 26 25 7 40 40 H 1.08999 * 117.49501 * 359.97438 * 26 25 7 41 41 H 1.09000 * 117.49767 * 0.02562 * 27 25 7 42 42 H 1.08996 * 117.49720 * 214.98246 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.7272 -1.6927 -1.1195 6 8 1.7082 -0.2517 -2.4495 7 7 2.0183 -0.6905 1.1962 8 6 2.8884 -0.0753 2.0215 9 8 3.3146 -0.6585 2.9996 10 7 3.2858 1.1861 1.7627 11 6 4.1149 1.8583 2.6681 12 6 5.1248 1.1661 3.3320 13 6 5.9546 1.8225 4.2255 14 6 5.7827 3.1654 4.4760 15 6 4.7628 3.8767 3.8168 16 6 4.5803 5.2562 4.0683 17 1 3.6120 5.7094 3.9160 18 6 5.6545 6.0340 4.5146 19 7 6.8750 5.5692 4.4381 20 14 5.3459 7.7361 5.2197 21 1 3.8895 8.0252 5.1954 22 1 5.8382 7.7888 6.6197 23 1 6.0646 8.7476 4.4038 24 6 3.9264 3.2069 2.9061 25 6 1.5610 -2.0498 1.4954 26 6 1.0712 -2.3336 2.9168 27 6 2.4164 -2.8899 2.4458 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 2.0537 -0.7410 -3.2088 32 1 2.9973 1.6282 0.9489 33 1 5.2644 0.1114 3.1457 34 1 6.7374 1.2773 4.7321 35 1 6.4296 3.6722 5.1767 36 1 7.6197 6.1085 4.7471 37 1 3.1411 3.7436 2.3947 38 1 1.0603 -2.5681 0.6776 39 1 0.2483 -3.0388 3.0341 40 1 1.0897 -1.5091 3.6295 41 1 3.3193 -2.4311 2.8488 42 1 2.4785 -3.9609 2.2533 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313485971.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:02 Heat of formation + Delta-G solvation = -60.725930 kcal Electronic energy + Delta-G solvation = -26791.764782 eV Core-core repulsion = 22930.952782 eV Total energy + Delta-G solvation = -3860.811999 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.32701 -41.06890 -39.53129 -37.81182 -37.14919 -36.63342 -35.67336 -34.51832 -31.77647 -31.67650 -29.69344 -27.17005 -26.14305 -24.66525 -23.28430 -23.10377 -22.74899 -22.42351 -20.77853 -19.56766 -19.15113 -18.82245 -18.02394 -17.37933 -17.14392 -16.82892 -16.50116 -16.46933 -16.10406 -15.87375 -15.00471 -14.97510 -14.69264 -14.47380 -14.28235 -14.08098 -13.86035 -13.53405 -13.19137 -13.11705 -12.79936 -12.69123 -12.58617 -12.55011 -12.36776 -12.32188 -12.20852 -11.83743 -11.59992 -11.52609 -11.28081 -11.14679 -10.77395 -10.62238 -9.64834 -9.39113 -8.73476 -8.58225 -6.34864 0.89643 0.98249 1.06105 1.28382 1.42229 1.53822 1.57301 1.77638 2.16652 2.24038 2.61096 2.77994 3.05025 3.62339 3.71459 3.80032 3.92955 4.00856 4.10963 4.19536 4.41079 4.48679 4.67679 4.74308 4.81372 4.83307 4.95660 5.03081 5.05600 5.12698 5.20307 5.22222 5.34331 5.39577 5.53295 5.60593 5.64272 5.78247 5.95195 6.10657 6.16344 6.34699 6.69184 6.77418 6.92414 6.95314 7.01949 7.44393 8.37902 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018426 B = 0.003251 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.252686 B = 8610.639623 C = 9262.486870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.142 3.858 3 H 0.133 0.867 4 C 0.471 3.529 5 O -0.534 6.534 6 O -0.500 6.500 7 N -0.580 5.580 8 C 0.702 3.298 9 O -0.584 6.584 10 N -0.674 5.674 11 C 0.176 3.824 12 C -0.231 4.231 13 C -0.101 4.101 14 C -0.190 4.190 15 C 0.094 3.906 16 C -0.493 4.493 17 H 0.080 0.920 18 C 0.034 3.966 19 N -0.828 5.828 20 Si 0.985 3.015 21 H -0.256 1.256 22 H -0.268 1.268 23 H -0.266 1.266 24 C -0.249 4.249 25 C 0.100 3.900 26 C -0.174 4.174 27 C -0.206 4.206 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.430 0.570 32 H 0.409 0.591 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.287 0.713 37 H 0.113 0.887 38 H 0.150 0.850 39 H 0.125 0.875 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.949 -8.805 -12.220 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.036 3.964 3 H 0.150 0.850 4 C 0.312 3.688 5 O -0.423 6.423 6 O -0.313 6.313 7 N -0.315 5.315 8 C 0.405 3.595 9 O -0.463 6.463 10 N -0.325 5.325 11 C 0.082 3.918 12 C -0.253 4.253 13 C -0.120 4.120 14 C -0.210 4.210 15 C 0.091 3.909 16 C -0.523 4.523 17 H 0.099 0.901 18 C -0.181 4.181 19 N -0.455 5.455 20 Si 0.805 3.195 21 H -0.179 1.179 22 H -0.193 1.193 23 H -0.191 1.191 24 C -0.271 4.271 25 C -0.004 4.004 26 C -0.212 4.212 27 C -0.244 4.244 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.126 0.874 31 H 0.293 0.707 32 H 0.248 0.752 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.131 0.869 38 H 0.167 0.833 39 H 0.144 0.856 40 H 0.089 0.911 41 H 0.120 0.880 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.405 -9.238 -11.181 19.749 hybrid contribution 0.755 0.436 -0.458 0.985 sum -12.650 -8.802 -11.639 19.312 Atomic orbital electron populations 1.22113 0.87916 1.04839 1.05623 1.20880 0.99336 0.96366 0.79818 0.85019 1.23922 0.76571 0.82408 0.85923 1.90781 1.36415 1.27508 1.87619 1.84472 1.71689 1.58851 1.16323 1.46387 1.45946 1.15941 1.23247 1.16080 0.79170 0.81367 0.82928 1.90801 1.60172 1.64306 1.30979 1.42688 1.51681 1.13649 1.24450 1.17189 0.90620 0.91008 0.92945 1.20512 0.99694 0.98859 1.06211 1.20808 0.98378 0.94602 0.98203 1.21389 1.02909 0.93040 1.03687 1.17740 0.90745 0.93635 0.88786 1.19826 0.97550 0.93584 1.41334 0.90149 1.26769 0.93840 1.04502 0.92948 1.69881 1.00392 1.39773 1.35421 0.85120 0.79838 0.76109 0.78387 1.17940 1.19263 1.19084 1.20859 1.06910 0.93385 1.05933 1.21519 1.03028 0.81697 0.94154 1.23269 0.98073 1.03244 0.96656 1.23739 0.97634 0.99287 1.03708 0.90516 0.90066 0.87379 0.70732 0.75188 0.88127 0.87600 0.87481 0.90232 0.86908 0.83306 0.85646 0.91098 0.88000 0.87771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.03 71.98 0.65 -1.02 16 2 C 0.14 2.58 3.14 44.24 0.14 2.72 16 3 H 0.13 2.14 5.49 -2.39 -0.01 2.13 16 4 C 0.47 8.79 7.49 71.23 0.53 9.33 16 5 O -0.53 -14.27 16.20 21.95 0.36 -13.91 16 6 O -0.50 -5.63 13.33 -51.46 -0.69 -6.31 16 7 N -0.58 -15.39 2.45 -795.94 -1.95 -17.33 16 8 C 0.70 25.22 7.85 179.06 1.41 26.63 16 9 O -0.58 -25.33 9.67 -4.00 -0.04 -25.37 16 10 N -0.67 -24.15 5.22 -317.32 -1.66 -25.81 16 11 C 0.18 8.03 6.24 38.10 0.24 8.27 16 12 C -0.23 -11.44 8.69 22.58 0.20 -11.24 16 13 C -0.10 -5.13 10.02 22.20 0.22 -4.91 16 14 C -0.19 -10.40 8.69 22.75 0.20 -10.20 16 15 C 0.09 5.09 5.58 -21.31 -0.12 4.97 16 16 C -0.49 -26.20 9.07 23.46 0.21 -25.99 16 17 H 0.08 4.06 7.88 -2.92 -0.02 4.03 16 18 C 0.03 1.68 5.21 85.25 0.44 2.13 16 19 N -0.83 -43.36 10.79 21.82 0.24 -43.13 16 20 Si 0.98 37.74 29.58 68.60 2.03 39.77 16 21 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 22 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 23 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 24 C -0.25 -12.01 9.71 22.85 0.22 -11.79 16 25 C 0.10 2.43 4.75 44.99 0.21 2.65 16 26 C -0.17 -4.28 9.85 30.60 0.30 -3.98 16 27 C -0.21 -5.90 9.65 30.59 0.30 -5.61 16 28 H 0.08 0.78 7.22 -2.39 -0.02 0.76 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.11 0.76 8.11 -2.39 -0.02 0.74 16 31 H 0.43 1.60 9.10 -74.05 -0.67 0.93 16 32 H 0.41 11.44 6.22 -92.71 -0.58 10.86 16 33 H 0.10 5.02 6.42 -2.91 -0.02 5.00 16 34 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 35 H 0.11 6.08 6.07 -2.91 -0.02 6.06 16 36 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 37 H 0.11 4.88 8.06 -2.92 -0.02 4.86 16 38 H 0.15 2.84 7.37 -2.39 -0.02 2.82 16 39 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.07 2.18 7.53 -2.39 -0.02 2.17 16 41 H 0.10 3.85 5.21 -5.95 -0.03 3.82 16 42 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -73.02 348.99 3.26 -69.76 By element: Atomic # 1 Polarization: 40.55 SS G_CDS: -0.18 Total: 40.37 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 5.15 Total: -18.04 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -3.37 Total: -86.27 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -0.37 Total: -45.59 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -73.02 3.26 -69.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313485971.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.036 kcal (2) G-P(sol) polarization free energy of solvation -73.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds